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Fig. 2 in Hybridisation In The Wild Between The Great Hornbill (Buceros Bicornis) And The Rhinoceros Hornbill (Buceros Rhinoceros) In Thailand And Its Genetic Assessment
Fig. 2. Comparative features among the chicks of the hybrid (I and a–f), the great hornbill (II and g–l), the rhinoceros hornbill (III and m–r), and adult males and females of both species (A–C). Descriptions of morphological features of the hybrid chick and chicks of the great hornbill and the rhinoceros hornbill were given in Table 1. Please note that the female great hornbill and the male rhinoceros hornbill in II and III are not the real hybrid parents.
Fig. 1 in Hybridisation In The Wild Between The Great Hornbill (Buceros Bicornis) And The Rhinoceros Hornbill (Buceros Rhinoceros) In Thailand And Its Genetic Assessment
Fig. 1. Capture locations of two interspecific hybrids and a mother great hornbill in 2004 at Budo Mountain within the National Park (a) and in 2008 at 4 km from the National Park (b).
Fig. 1 in Using a spatial mark-resight model to estimate the parameters of a wild pig (Sus scrofa) population in Singapore
Fig. 1. Map showing the location of the Central Catchment Nature Reserve on mainland Singapore. All 27 camera points are indicated with a red circle. Black squares indicate the three camera points added to the 1 km2 grid. The six cage traps are marked with a blue cross. Dotted circles indicate areas the last remaining patches of primary forest in Singapore.
Fig. 3 in Using a spatial mark-resight model to estimate the parameters of a wild pig (Sus scrofa) population in Singapore
Fig. 3. Map of the Central Catchment Nature Reserve showing the day and night fixes of the collared pig. The home ranges are calculated from the monthly 95% Kernel Density Estimate (KDE), while the aggregate home range was calculated from the 99% KDE from all six months. The Seletar Expressway (SLE) is pointed out on the map and the satellite overlay was adapted from Google Earth.
Fig. 2 in Using a spatial mark-resight model to estimate the parameters of a wild pig (Sus scrofa) population in Singapore
Fig. 2. The density map showing the number of activity centres per kilometer square, the locations of the camera points (circles), 143 out of 856 GPS locations from the collared pig (black dots) and the boundary of the Central Catchment Nature Reserve. Only a fraction of the GPS locations was plotted to prevent the colored pixels from being obscured. Each pixel is 1 km2. X and Y coordinates are in kilometers.
Fig. 11 in Developmental Abnormalities in Wild Populations of Birds: Examples from Lesser Snow Geese (Chen caerulescens caerulescens)
Fig. 11. Asymmetrical reduction in lower mandible of specimen LPB009 that also displays misshapen anterior frontal bones.
Fig. 3. Specimen LPB002 in Developmental Abnormalities in Wild Populations of Birds: Examples from Lesser Snow Geese (Chen caerulescens caerulescens)
Fig. 3. Specimen LPB002 displaying duplication of mandibles and fusion of medial eye socket. Entire specimen (left) and details of head region (right).
Figure 2 in Occurrence of the introduced snake mite, Ophionyssus natricis (Gervais, 1844), in the wild in Australia
Figure 2 The locality inside the dried-up earth dam where the infested lizard was caught and where it as recaptured four months later (photographed by Gerrut Norval).
Figure 3 in Occurrence of the introduced snake mite, Ophionyssus natricis (Gervais, 1844), in the wild in Australia
Figure 3 One of the four engorged females ofOphionyssus natricis that were collected from a sleepy lizard (Tiliqua rugosa) on 17 August 2019 at the study site surrounding the Bundey Lutheran Church ruins in the Mid North of South Australia (photographed by Gerrut Norval).
Figure 1 in Occurrence of the introduced snake mite, Ophionyssus natricis (Gervais, 1844), in the wild in Australia
Figure 1 The sleepy lizards (Tiliqua rugosa) were checked for mite by holding them within a plastic container and brushing the areas under their scales with a fine paintbrush (photographed by Jessica Clayton).
TYPES: Male holotype from Panama: Panama: Parque Nacional Altos de Campana, 1 hectare PANCODING Inventory, 895 m, 8.68333°, -79.92972°, June 14–19, 2007, M. Arnedo, D. Dimitrov, G. Hormiga, F. Labarque, M. Ramírez, deposited in MIUP, PBI_OON 42313; same data, 1 male paratype deposited in MACN-Ar 29895, PBI_OON 42312. ETYMOLOGY: A noun in apposition; in Greek religion and mythology, Pan is the god of the wild natural world, of shepherds, flocks, and mountains, and of hunting and rustic music. He has hindquarters, legs, and horns of a goat, and the name is here employed to note the large mac- rosetae at the eye region of males that resemble the horns in some illustrations of this god. DIAGNOSIS: This is one of the most autapomor- phic species from the Americas; males have the labium fused with the sternum (fig. 34B), small chelicerae, shorter than the endite length, with anterior blunt projections, and directed backward in lateral view (fig. 34D, E); clypeus directed back- ward (fig. 34D); two light areas on the sternum just below the endites (fig. 34B), carapace almost flat in lateral view and two strong macrosetae at the eye region, pointing forward (fig. 34C–E). Other characters of the male palp, such as the presence of two apophyses, also distinguish this species from others (fig. 38D–F). MALE (PBI_OON 42312): Total length 1.00. Habitus as in figure 34A–C. CEPHALOTHO- RAX: Carapace orange, with brown stripe along in Taxonomic Revision Of The Jumping Goblin Spiders Of The Genus Orchestina Simon, 1882, In The Americas (Araneae: Oonopidae)
TYPES: Male holotype from Panama: Panama: Parque Nacional Altos de Campana, 1 hectare PANCODING Inventory, 895 m, 8.68333°, -79.92972°, June 14–19, 2007, M. Arnedo, D. Dimitrov, G. Hormiga, F. Labarque, M. Ramírez, deposited in MIUP, PBI_OON 42313; same data, 1 male paratype deposited in MACN-Ar 29895, PBI_OON 42312. ETYMOLOGY: A noun in apposition; in Greek religion and mythology, Pan is the god of the wild natural world, of shepherds, flocks, and mountains, and of hunting and rustic music. He has hindquarters, legs, and horns of a goat, and the name is here employed to note the large mac- rosetae at the eye region of males that resemble the horns in some illustrations of this god. DIAGNOSIS: This is one of the most autapomor- phic species from the Americas; males have the labium fused with the sternum (fig. 34B), small chelicerae, shorter than the endite length, with anterior blunt projections, and directed backward in lateral view (fig. 34D, E); clypeus directed back- ward (fig. 34D); two light areas on the sternum just below the endites (fig. 34B), carapace almost flat in lateral view and two strong macrosetae at the eye region, pointing forward (fig. 34C–E). Other characters of the male palp, such as the presence of two apophyses, also distinguish this species from others (fig. 38D–F). MALE (PBI_OON 42312): Total length 1.00. Habitus as in figure 34A–C. CEPHALOTHO- RAX: Carapace orange, with brown stripe along
Fig. 2 in Assessing diet composition of seahorses in the wild using a non destructive method: Hippocampus reidi (Teleostei: Syngnathidae) as a study-case
Fig. 2. Feeding strategy diagram. Prey-specific abundance plotted against frequency of occurrence of prey items in the diet of the seahorse Hippocampus reidi (n = 280). Prey items: 1. Nematoda, 2. Copepoda, (Harpacticoida), 3. Caridae, 4. Copepoda (nauplii), 5. Copepoda (Calanoida), 6. Copepoda (Cyclopoida), 7. Caridae (chelipods), 8. Teleostei (Gobiidae), 9. Insecta (Hymenoptera), 10. Amphipoda (Gammaridae), 11. Teleostei (scales), 12. Polichaeta (larvae), 13. Amphipoda (Caprellidae), 14. Ostracoda, 15. Eggs (possibly of mollusks or crustaceans), 16. Polichaeta (Nereididae), 17. Brachyura (nauplii), 18. Insecta (Chironomidae), 19. Crustacea (larvae), 20. Gastropoda (larvae), 21. Bivalvia (larvae), 22. Caridae (zoea), 23. Isopoda, 24. Oligochaeta, 25. Foraminifera.
Fig. 1 in Assessing diet composition of seahorses in the wild using a non destructive method: Hippocampus reidi (Teleostei: Syngnathidae) as a study-case
Fig. 1. Mean values of induction (square) and recovery (lozenge) times of Hippocampus reidi (n = 242) in seconds (box = standard error; whisker = standard deviation). Reproduc- tive state: IM = immature, OF = ovipositor region flat, OB = ovipositor region bulging, B = brooding, NB = non-brooding. Sex: U = undetermined, F = female, M = male.
Fig. 1 in Chromosomal variability in the wild ornamental species of Symphysodon (Perciformes: Cichlidae) from Amazon
Fig. 1. Photo of analyzed species: (A) Symphysodon haraldi from Manacapuru, (B) S. aequifasciatus from Tefé, (C) S. discus from Barcelos, and map showing the location of discus sampling sites.
Gut microbiota of wild arboreal and ground-feeding tropical primates
<p>16S rRNA gene and ITS sequences from fecal samples of 12 groups of Udzungwa (Tanzania) red colobus Procolobus gordonorum (total number of samples: 89), and five groups of yellow baboon Papio cynocephalus (total number of samples: 69).</p> <p>The dataset consists of the following files:</p> <ul> <li><strong>16S_raw.tar</strong>: raw 16S rRNA gene sequences;</li> <li><strong>16S_filtered.fasta.gz</strong>: merged, adapter trimmed and quality filtered 16S rRNA gene sequences;</li> <li><strong>16S_ID.txt</strong>: 16S file ID to sample ID mapping;</li> <li><strong>ITS_raw.tar</strong>: raw ITS sequences;</li> <li><strong>ITS_filtered.fasta.gz</strong>: merged, adapter trimmed and quality filtered ITS sequences;</li> <li><strong>ITS_ID.txt</strong>: ITS file ID to sample ID mapping;</li> <li><strong>Metadata.tsv</strong>: sample metadata;</li> <li><strong>Accessions.tsv</strong>: ENA project and sample accessions;</li> <li><strong>Helminths.tsv</strong>: helminths abundances table.</li> </ul> <p> </p>
QTL mapping and transcriptome analysis of Sclerotinia-resistance in the wild cabbage species Brassica oleracea var. villosa [Main code]
<p>This is the main code supplement for my computational analysis for the manuscript: "QTL mapping and transcriptome analysis of Sclerotinia-resistance in the wild cabbage species <em>Brassica oleracea </em>var<em>. villosa".</em> The main code is availabe in separate html-files. DOI will be added if available.</p>
Data from: Ecological and social pressures interfere with homeostatic sleep regulation in the wild
<p>Sleep is fundamental to the health and fitness of all animals. The physiological importance of sleep is underscored by the central role of homeostasis in determining sleep investment – following periods of sleep deprivation, individuals experience longer and more intense sleep bouts. Yet, most sleep research has been conducted in highly controlled settings, removed from evolutionarily-relevant contexts that may hinder the maintenance of sleep homeostasis. Using tri-axial accelerometry and GPS to track the sleep patterns of a group of wild baboons (<i>Papio anubis</i>), we found that ecological and social pressures indeed interfere with homeostatic sleep regulation. Baboons sacrificed time spent sleeping when in less familiar locations and when sleeping in proximity to more group-mates, regardless of how long they had slept the prior night or how much they had physically exerted themselves the preceding day. Further, they did not appear to compensate for lost sleep via more intense sleep bouts. We found that the collective dynamics characteristic of social animal groups persist into the sleep period, as baboons exhibited synchronized patterns of waking throughout the night, particularly with nearby group-mates. Thus, for animals whose fitness depends critically on avoiding predation and developing social relationships, maintaining sleep homeostasis may be only secondary to remaining vigilant when sleeping in risky habitats and interacting with group-mates during the night. Our results highlight the importance of studying sleep in ecologically relevant contexts, where the adaptive function of sleep patterns directly reflects the complex trade-offs that have guided its evolution.</p>
Data and code for: Plastic and quantitative genetic divergence mirror environmental gradients among wild, fragmented populations of Impatiens capensis
<p><strong>Premise of the study:</strong> Habitat fragmentation generates molecular genetic divergence among isolated populations but few studies have assessed phenotypic divergence and fitness in populations where the genetic consequences of habitat fragmentation are known. Phenotypic divergence could reflect plasticity, local adaptation, and/or genetic drift.</p> <p><strong>Methods:</strong> We examined patterns and potential drivers of phenotypic divergence among 12 populations of jewelweed (<em>Impatiens capensis </em>Meerb.) that show strong molecular genetic signals of isolation and drift among fragmented habitats. We measured morphological and reproductive traits in both maternal plants within natural populations and their self-fertilized progeny grown together in a common garden. We also quantified environmental divergence between home sites and the common garden.</p> <p><strong>Key results: </strong>Populations with less molecular genetic variation expressed less maternal phenotypic variation. Progeny in the common garden converged in phenotypes relative to their wild mothers but retained among-population differences in morphology, survival, and reproduction. Among-population phenotypic variance was 3-10x greater in home sites than in the common garden for 6 of 7 morphological traits measured. Patterns of phenotypic divergence paralleled environmental gradients in ways suggestive of adaptation. Progeny resembled their mothers less as the environmental distance between their home site and the common garden increased.</p> <p><strong>Conclusions: </strong>Despite strong molecular signatures of isolation and drift, phenotypic differences among these <em>Impatiens </em>populations appear to reflect both adaptive quantitative genetic divergence and plasticity. Quantifying the extent of local adaptation and plasticity and how these covary with molecular and phenotypic variation help us predict when populations may lose their adaptive capacity. </p>
Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis
<p>Bioinformatic code, data files, raw figures and data accessibility table associated to the manuscript "Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis".</p>
Cambridge butterfly wing collection - Patricio Salazar PhD wild and bred specimens batch 1
<p>EN:</p> <p>This upload contains photographs taken by Imogen Gavins in the Butterfly Genetics Group at the University of Cambridge from the 27th September 2018 until the 26th October 2018. </p> <p>This batch contains Patricio Salazar's wild and bred specimen collection. The wild specimens are from mostly across the H. m. plesseni/malleti and H. e. notabilits/lativitta hybrid zones in the Eastern slope of the Andes collected in 2009 - 2011. The broods are from these wild specimens. <br> Some images overlap with 'Cambridge butterfly wing collection batch 1', taken by Eva Whiltshire. Images here differ in having a white reflectance standard for calibration. Information on duplicates can be found in 'CAM.coll.patricio.batch1.csv'.</p> <p>ID range:</p> <p>CAM017449 - CAM017999</p> <p>Nomenclature</p> <p>CAMXXXXXX : unit ID corresponding to individual samples<br> _v _d: ventral or dorsal<br> _whitestandard: signifies the use of a white reflectance standard in the images. </p> <p>Information on individual samples from the Butterfly Genetics Group Collection can be found on the public database Earthcape (click <a href="https://heliconius.ecdb.io/#ViewID=ContentPage_DetailView&ObjectKey=843e8ec1-41a6-4706-9622-f643132da859&ObjectClassName=EarthCape.Module.Core.ContentPage&mode=View">here</a> for the database, and <a href="http://heliconius.zoo.cam.ac.uk/databases/earthcape-specimen-database/">here</a> for FAQ)</p> <p>Please contact Chris Jiggins (c.jiggins[at]zoo.cam.ac.uk), Gabriela Montejo-Kovacevich (mgm49[at]cam.ac.uk) or Ian Warren (iaw22[at]cam.ac.uk) for requests.</p> <p> </p> <p>------------------------------------------------------</p> <p>ES:</p> <p>Este repositorio contiene fotografías tomadas por Imogen Gavins en el Butterfly Genetics Group de la Universidad de Cambridge desde el 27 de septiembre de 2018 hasta el 16 de octubre de 2018.</p> <p>Este lote contiene la colección de especímenes silvestres y criados por Patricio Salazar. Los especímenes silvestres son principalmente de la zona híbrida y alrededores de H. m. plesseni / malleti y H. e. notabilits / lativitta en la vertiente oriental de los Andes recogidas en 2009 - 2011. Las crías son de especímenes silvestres.<br> Algunas imágenes sobreplan en 'Cambridge butterfly collection batch 1', col las imágenes tomadas por Eva Whiltshire. Las imágenes en esta carpeta difieren en la reflectancia blanca para la calibración. La información sobre los duplicador puede encontrarse en 'CAM.coll.patricio.batch1.csv'.</p> <p> ID rango:</p> <p>CAM017449 - CAM017999</p> <p>Nomenclatura</p> <p>CAMXXXXXX: ID de unidad correspondiente a muestras individuales<br> _v _d: ventral o dorsal<br> _whitestandard: significa el uso de la reflectancia blanca en las imágenes.</p> <p>Puede encontrar información sobre muestras individuales de Butterfly Genetics Group Collection en la base de datos pública Earthcape (haga clic <a href="https://heliconius.ecdb.io/#ViewID=ContentPage_DetailView&ObjectKey=843e8ec1-41a6-4706-9622-f643132da859&ObjectClassName=EarthCape.Module.Core.ContentPage&mode=View">aquí</a> para la base de datos, y <a href="http://heliconius.zoo.cam.ac.uk/databases/earthcape-specimen-database/">aquí</a> para preguntas frecuentes)</p> <p>Por favor, póngase en contacto con Chris Jiggins (c.jiggins [arroba] zoo.cam.ac.uk), Gabriela Montejo-Kovacevich (mgm49 [arroba] cam.ac.uk) o Ian Warren (iaw22 [arroba] cam.ac.uk) con sus preguntas o peticiones.</p> <p><br> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.