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opencc-by-4.0Jun 2024View details →

OTTR standard type hierarchy

The standard type hierarchy of the OTTR framework.

opencc-by-4.0Jan 2024View details →

Dataset for the study "Deep Learning-Based Precipitation Simulation for Different Types of Weather Events in Eastern China"

This dataset contains the data and codes used in the study "Deep Learning-Based Precipitation Simulation for Different Types of  Weather Events in Eastern China". The resources will be updated continously.

Prediction of the ground state for indenofluorene-type systems with Clar's π-sextet model

This dataset contains the computational data associated with "Prediction of the ground state for indenofluorene-type systems with Clar's π-sextet model".

Faecal samples analysed per bat species for each location, season and habitat type in northern Madagascar

This table is part of the PhD thesis of Carme Tuneu-Corral, entitled 'Bats and rice: promoting Integrated Pest Management to enhance biodiversity conservation'. It is the Table A4.1 of the supplementary material of the Chapter 5 'Beyond borders: evaluating the role of protected areas in promoting bat-mediated pest suppression in rural areas of northern Madagascar', and compiles the information on the number of samples analysed per bat species for each location, season and habitat type. Buildings were all located in rural villages outside protected areas, and caves and forest were all located inside protected areas. Methodology:  Due to the subtropical climate of this country, we sampled bats in two periods representing the two main seasons for both Amber Mountain and Ankarana. Dry and wet season vary slightly in timing and extent, and we adjusted the field periods to cover the end of the dry season (October – November 2022), and the end of the wet season (May 2023, as in April one of the protected areas was inaccessible due to the poor state of the road caused by heavy rains). French Mountain was visited only in the dry season (October – November  2022) due to logistic limitations. We used mist-nets and harp traps to sample insectivorous bats in protected areas and rural villages. Bat captures were conducted for 7-10 consecutive nights in each protected area, changing sampling points daily to cover a wider area. We sampled bats in a total of six caves and four forest points in Ankarana; six caves and two forest points in French Mountain; and 10 forest points in Amber Mountain (there are no known caves in this protected area). Three school buildings were visited at 16 km from Ankarana borders, two public buildings at 3 km from Amber Mountain borders, and two school buildings at 1 km from French Mountain borders. When sampling forest habitats, mist-nets and harp traps were installed 30 minutes before sunset and remained open for at least four hours. When sampling bats at roost entrances (caves inside protected areas and buildings in rural villages), bats were captured before sunrise when returning to the colony after feeding. In these cases, we used mist-nets and harp traps set up four hours before dawn, which remained in place until 30 minutes after sunrise. All insectivorous bats captured were measured, weighed and identified using different bibliographic references. Bat captures and handling were conducted following guidelines approved by the American Society of Mammalogists (Sikes and Gannon, 2011). Bats were kept in clean cloth bags until they defecated, generally for a maximum of one hour. In case the bat individuals had not defecated within that time interval, they were released after being measured, weighted and identified. Faecal pellets of each individual were immediately collected and stored in 2 ml tubes with 95% ethanol and labelled accordingly. All bats were released at the same site where they were captured. We gathered a total of 500 samples to assess bat diet: 250 samples collected in the dry season and 250 samples in the wet season. The number of samples collected per species varied according to their rate of capture at the different sampling points. We were able to trap 15 different insectivorous bat species, 11 Madagascar endemics, and four regional endemics also occurring on nearby islands. Twelve bat species were captured exclusively inside the protected areas and those considered largely forest dependent are highlighted in bold (Chaerephon jobimena, Laephotis matroka, Macronycteris commersoni, Miniopterus aelleni, M. ambohitrensis, M. gleni, M. griveaudi, Myotis goudoti, Otomops madagascariensis, Paratriaenops auritus, Paremballonura tiavato, Triaenops menamena), and two were captured exclusively outside the protected areas (Chaerephon leucogaster, Mops leucostigma). Mormopterus jugularis was the only species found roosting both in caves and buildings, although it was primarily captured in natural roosts in this study. We collected faecal samples for all these species, obtaining operational genetic material (i.e. OTUs representing more than 1% of the total dietary reads of each sample) from 454 of the 500 faecal samples analysed (Table A4.1).

opennotspecifiedJul 2024View details →

FIGURE 2 in A new genus, Ngankeecaris (Decapoda, Palaemonidae), with supplementary records of its type species, N. dardanicola (Bruce & Okuno, 2006) from the Ryukyu Islands, Japan

FIGURE 2. Ngankeecaris dardanicola (Bruce & Okuno, 2006) comb. nov. CMNH-ZC 2856, ♀, CL 4.3 mm. Fresh specimen, lateral (A) and dorsal (B) views. Photographs by R. Yoshida.

opennotspecifiedJul 2024View details →

FIGURE 1 in A new genus, Ngankeecaris (Decapoda, Palaemonidae), with supplementary records of its type species, N. dardanicola (Bruce & Okuno, 2006) from the Ryukyu Islands, Japan

FIGURE 1. Ngankeecaris dardanicola (Bruce & Okuno, 2006) comb. nov. A, C, CMNH-ZC 2856, ♀, CL 4.3 mm; B, CMNHZC 1895, female (paratype of Periclimenes dardanicola), CL 3.6 mm. A, anterior part of carapace with rostrum, lateral; B, fourth and fifth thoracic sternites, ventral; C, right second pereiopod, distal part of merus, carpus and proximal part of palm, ventral.

Data and code used for 'Thigh-Worn Accelerometry: A Comparative Study of Two No-Code Classification Methods for Identifying Physical Activity Types'

This repository contains all data necessary to reproduce the results for the manuscript titled 'Thigh-Worn Accelerometry: A Comparative Study of Two No-Code Classification Methods for Identifying Physical Activity Types'.   <h2>File structure</h2> - analysis The analysis subfolder contains all R scripts used for the study: 1. Sample size estimation 2. Synchronisation of the timestamps 3. Processing of the raw data 4. Calculating the interrater agreement 5. Calculating all performance metrics and producing the plots In addition, the two subfolders contain the plots and result tables produced when running the scripts.   - data The data folder contains all raw data as well as the processed data. A subfolder for each subject contains the video annotations (.eaf), the raw acceleration data (.csv) and the SENS motion classification data (.csv). The ActiPASS subfolder contains the raw acceleration files in binary file format as well as the ActiPASS output. The shiny subfolder contains the R code used for running the shiny app during data collection as well as the logged data and timestamps.   - documents This folder contains any additional documents used in the study.   <h2>Requirements</h2> The data processing and analysis was performed in R (Version 4.3.2). To run the full analysis in R, the following packages need to be installed: <ul> <li>tidyverse</li> <li>xml2</li> <li>lubridate</li> <li>here</li> <li>dygraphs</li> <li>hms</li> <li>irr</li> <li>yardstick</li> <li>cowplot</li> <li>gt</li> </ul>

3D spinal column point clouds of mice with RyR1 mutations and their wild-type littermates

Spinal column point clouds of mice with RyR1 mutations and their wild-type littermates. Part of the paper Ruiz et al., "Reduction of RyR1 expression in muscle spindles causes alterations of the proprioceptive properties and scoliosis in mice carrying recessive Ryr1 mutations"

opencc-by-4.0May 2024View details →

Circumnuclear Dust in Luminous Early-Type Galaxies -- I. Sample Properties and Stellar Luminosity Models

This dataset contains the HST mosaic images created and described in the paper "Circumnuclear Dust in Luminous Early-Type Galaxies -- I. Sample Properties and Stellar Luminosity Models" by J. Davidson, B. Boizelle, J. Walsh, A. Barth, E. Rasmussen, A. Baker, D. Buote, J. Darling, L. Ho, K. Kabasares, and J. Cohn. Each mosaic was created by drizzling the data to a pixel scale of 0.08 and a pixel fraction of 0.75. The data are mostly in the infrared and optical and only occasionally in the ultraviolet. <h2>Data Structure</h2> These data are organized by target and each target has its own .zip file. Each .zip file is organized by HST camera, then by filter. For example, for the target Hydra A, the data are sorted into the following folders: <ul> <li>acs_sbc <ul> <li>f140lp</li> <li>f150lp</li> </ul> </li> <li>acs_wfc <ul> <li>f814w</li> </ul> </li> <li>wfc3 <ul> <li>f110w</li> <li>f160w</li> <li>f475w</li> </ul> </li> <li>aligned</li> </ul> The aligned folder for each target contains all the aligned mosaic images. These were aligned to their respective wfc3/f160w image using TweakReg, then further corrected using interpolation to obtain sub-pixel accuracy. <h2>File Naming</h2> All mosaic image files for all filters follow the same naming convention: <target name + filter + pixel fraction + pixel scale>_ drz_sci.fits. For example, the Hydra A f160w mosaic is named hydraa_f160w_pxfr075_pxsc008_drz_sci.fits. PSF files, both empirical and Tiny Tim (each drizzled to the same pixel scale and pixel fraction as the HST data), are included in each f110w and f160w folder and follow a similar naming convention. To these file names are added either *emp_psfdrz* for the empirical PSF or *psfdrz* for the Tiny Tim PSF. For example, the Hydra A f160w empirical PSF file is named hydraa_f160w_emp_psfdrz_pxfr075_pxsc008_drz_sci.fits, whereas the Tiny Tim PSF file is named hydraa_f160w_psfdrz_pxfr075_pxsc008_drz_sci.fits. The f160w folders for all targets also contain a few extra files: <ol> <li>Mask files, called f160w_mask.fits in all cases, which indicate the positions and extents of all extraneous sources of light (foreground stars, background galaxies, cosmic ray hits, etc.) in the respective f160w mosaics.</li> <li>A .txt file that contains the final GALFIT MGE solution and follows the naming convention <target>_f160w_galfitmge_dustmask_tinytim_sol.txt. Note that the Tiny Tim PSF was used to obtain the final MGE solution in every case.</li> <li> A .fits file that contains the model based on the final GALFIT MGE solution. These follow the naming convention <target>_f160w_pxfr075_pxs0080_drz_galfit_ttpsf_qbounds020.fits.</li> <li>For NGC 3862 only, we also obtained an MGE solution using the empirical PSF for comparison purposes. For this target, the .txt MGE solution that utilizes the empirical PSF is named ngc3862_f160w_galfitmge_dustmask_emp_sol.txt and the corresponding model .fits file is named ngc3862_f160w_pxfr075_pxs0080_drz_galfit_cenpsf_emppsf_qbounds020.fits.</li> </ol> For NGC 1387, NGC 3862, NGC 4261, and NGC 4435, a second round of observations were obtained using a subarray and shorter exposure times. The f110w and f160w folders for these galaxies therefore also have a few extra files that contain the drizzled images and empirical and Tiny Tim PSFs for these subarray exposures. These files follow the same naming conventions as previously described, with the addition of *subarr* to distinguish between the full array and subarray files. For example, the NGC 1387 drizzled subarray image is named ngc1387_f160w_subarr_pxfr075_pxsc008_drz_sci.fits, whereas the full-array, longer exposure time image is named ngc1387_f160w_pxfr075_pxsc008_drz_sci.fits. Please note that these subarray images were not used in any of the final MGEs or the analysis described in the paper, but are included here for sake of completeness. In the aligned folders, all aligned images follow the same naming convention: <target>_<camera>_<filter>_pxfr075_pxsc008_drz_align_sci.fits.

Naturally occurring horse model of miscarriage reveals temporal relationship between chromosomal aberration type and point of lethality

Released .idata files, sample metadata and array manifest file for the paper "Naturally occurring horse model of miscarriage reveals temporal relationship between chromosomal aberration type and point of lethality"

opencc-by-sa-4.0Jul 2024View details →

Data for Voltage-dependent G-protein Regulation of CaV2.2 (N-type) Channels

Open the record for dataset details and reuse information.

Shocking and Mass Loss of Compact Donor Stars in Type Ia Supernovae

MESA inlists and output files, Athena++ input and output files and simulation movies for the paper "Shocking and Mass Loss of Compact Donor Stars in Type Ia Supernovae" . Uses MESA version 24.03.1, and MESA SDK version aarch64-macos-23.10.1. See README for details.

How stable are solar-type cycles over half a century? Chromospheric S-indices Mt. Wilson vs. TIGRE

by Klaus-Peter Schröder (1); Jürgen Schmitt (2); Marco Mittag (2) Departamento de Astronomia, Universidad de Guanajuato, Mexico; Hamburger Sternwarte, University of Hamburg, Germany Since autumn 2013, the robotic 1.2m telescope TIGRE (formerly the Hamburg Robotic Telescope) is operating in Guanajuato (Mexico, and see poster by Gonzalez et al.). Regularly using the same calibration stars for S-indices as did the Mount Wilson project (see Baliunas et al. 1995), our R=20,000 HEROS echelle spectra have provided a decade of chromospheric activity monitoring of the same ca. 100 solar-type stars, including a smaller number with pronounced cycles (see Schröder et al. 2013) of periods of o(10yrs), which were already observed at Mount Wilson since the 1970ies. Hence, on a timescale of half a century, we can now use those same stars, first shown by Olin C. Wilson and his group to perform solar-type activity cycles, to probe the stability of these cycles. This is motivated by the solar cycle variability, which is evident, when comparing the last two, relatively weak maxima monitored by TIGRE, with the Mount Wilson data from the 1970ies and 1980ies. Hence, we here show that this is not a singular behavior. Strong cycles seem to be less variable, while weaker cycles like the solar are natural to change between stronger and weaker performance. In the case of the Sun this behavior is consistent with an o(century)-period as of the semi-regular Gleissberg cycle, as well as with the occurrence of grand-minima. Theme(s): The Sun and Cool Stars in the Time Domain, Cool Stars as Stellar Systems

U-Pb-Th SHRIMP & LA-ICP-MS complementary data of "The bimodal Fii-A2-type and calc-alkaline volcanic sequence of the Aljustrel brownfield region, Iberian Pyrite Belt, SW Iberian Massif"

U-Pb-Th complementary  data of  "The bimodal Fii-A2-type and calc-alkaline volcanic sequence of the Aljustrel brownfield region, Iberian Pyrite Belt, SW Iberian Massif" <a title="Persistent link using digital object identifier" href="https://doi.org/10.1016/j.chemer.2023.126049" target="_blank" rel="noreferrer noopener">https://doi.org/10.1016/j.chemer.2023.126049</a>

FIGURE 30. A–C. Rhagodes karschi Kraepelin 1899, male holotype. D–F. Rhax termes Karsch 1885, female lectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view. F in An annotated type catalogue of the camel spiders (Arachnida: Solifugae) held in the Zoological Museum Hamburg

FIGURE 30. A–C. Rhagodes karschi Kraepelin 1899, male holotype. D–F. Rhax termes Karsch 1885, female lectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view. F. Ventral view.

FIGURE 25. Solpuga tubicen Kraepelin 1911. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view F in An annotated type catalogue of the camel spiders (Arachnida: Solifugae) held in the Zoological Museum Hamburg

FIGURE 25. Solpuga tubicen Kraepelin 1911. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view F. Ventral view.

FIGURE 22. Solpuga alcicornis Kraepelin 1914. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view. F in An annotated type catalogue of the camel spiders (Arachnida: Solifugae) held in the Zoological Museum Hamburg

FIGURE 22. Solpuga alcicornis Kraepelin 1914. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view. F. Ventral view.

FIGURE 21. Solpuga capitulata Karsch 1885. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view F in An annotated type catalogue of the camel spiders (Arachnida: Solifugae) held in the Zoological Museum Hamburg

FIGURE 21. Solpuga capitulata Karsch 1885. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view F. Ventral view.

FIGURE 18. Galeodes araneoides discolor Kraepelin 1899. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view F in An annotated type catalogue of the camel spiders (Arachnida: Solifugae) held in the Zoological Museum Hamburg

FIGURE 18. Galeodes araneoides discolor Kraepelin 1899. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view F. Ventral view.

FIGURE 29. Rhagodes judaicus Kraepelin 1899. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view. F in An annotated type catalogue of the camel spiders (Arachnida: Solifugae) held in the Zoological Museum Hamburg

FIGURE 29. Rhagodes judaicus Kraepelin 1899. A–C. Male lectotype. D–F. Female paralectotype. A. Dorsal view. B. Ventral view. C. Left chelicera, external view. D. Left chelicera, external view. E. Dorsal view. F. Ventral view.