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Supplementary material 1 from: Merklinger FF, Luebert F (2020) Notes on the genus Ophryosporus (Asteraceae, Eupatorieae) in Chile. PhytoKeys 161: 61-77. https://doi.org/10.3897/phytokeys.161.53736
Table S1
Supplementary material 1 from: Wang L-J, Gao M-D, Sheng M-Y, Yin J (2020) Cluster analysis of karyotype similarity coefficients in Epimedium (Berberidaceae): insights in the systematics and evolution. PhytoKeys 161: 11-26. https://doi.org/10.3897/phytokeys.161.51046
Table S1. Karyotype resemblance-near coefficients in 51 Epimedium taxa and two Vancouveria species
On the agreement between bibliometrics and peer review. Supplementary materials
<p>Data sets and supplementary materials of the paper "On the agreement between bibliometrics and peer review: evidence from the Italian research assessment exercises" </p> <p><strong>DS1_EXP1 and EXP2 data.xls:</strong> raw anonymized data of the two experiments EXP1 and EXP2.</p> <p><strong>DS2_Avg_score_vs_perc_peer_review_VQR1_VQR2</strong>. average score and proportion of peer review evaluations at a scientific field level. Data from the two Italian research assessment exercises VQR1 and VQR2. </p> <p><strong>SM1_Fig_1_EXP1_geom_count_peer_vs_bibliometrics_all.png</strong>: joint distribution of peer review and bibliometrics evaluations for EXP1. R_ggplot: count overlapping points (proportion). All research areas.</p> <p><strong>SM1_Fig_2_EXP1_geom_count_peer_vs_bibliometrics_area.png: </strong> joint distribution of peer review and bibliometrics evaluations for EXP1. R_ggplot: count overlapping points (proportion). Separate plot for each research area.</p> <p><strong>SM1_Fig_3_EXP2_geom_count_peer_vs_bibliometrics_all.png</strong>: joint distribution of peer review and bibliometrics evaluations for EXP2. All scientific areas. R_ggplot: count overlapping points (proportion). All areas.</p> <p><strong>SM1_Fig_4_EXP2_geom_count_peer_vs_bibliometrics_area.png: </strong> joint distribution of peer review and bibliometrics evaluations for EXP2. R_ggplot: count overlapping points (proportion). Separate plot for each research area.</p> <p><strong>SM2_Fig_1_VQR1_plot_avg_score_percentage_peer.png</strong>: Average score and percentage of articles evaluated by peer review for<br> research fields in VQR1. All areas.</p> <p><strong>SM2_Fig_2_VQR1_avg_score_vs_percentage_peer</strong>:<strong> </strong>Regression lines for average score and percentage of articles evaluated by peer review for different research areas. VQR1.</p> <p><strong>SM2_Fig_3_VQR2_plot_avg_score_percentage_peer.png</strong>: Average score and percentage of articles evaluated by peer review for<br> research fields in VQR2. All areas.</p> <p><strong>SM2_Fig_4_VQR2_avg_score_vs_percentage_peer</strong>:<strong> </strong>Regression lines for average score and percentage of articles evaluated by peer review for different research areas. VQR2.</p> <p><strong>SM_supplementary_table_linear_weights.pdf</strong>: Cohen's kappa estimates with linear weights for EXP1 and EXP2. 4 tables.</p>
Supplementary material 1 from: Zhongying Q, Huihui C, Hao Y, Yuan H, Huimeng L, Xia L, Xingchun G (2020) Comparative mitochondrial genomes of four species of Sinopodisma and phylogenetic implications (Orthoptera, Melanoplinae). ZooKeys 969: 23-42. https://doi.org/10.3897/zookeys.969.49278
Tables S1–S7
Supplementary material 2 from: Zhongying Q, Huihui C, Hao Y, Yuan H, Huimeng L, Xia L, Xingchun G (2020) Comparative mitochondrial genomes of four species of Sinopodisma and phylogenetic implications (Orthoptera, Melanoplinae). ZooKeys 969: 23-42. https://doi.org/10.3897/zookeys.969.49278
Figures S1–S4
Supplementary material 2 from: Huang J, Guo Z, Tang S, Ren W, Chu G, Wang L, Zhao L, Yu R, Xu Y, Ding Y, Zang R (2020) Floristic composition and plant diversity in distribution areas of native species congeneric with Betula halophila in Xinjiang, northwest China. Nature Conservation 42: 1-17. https://doi.org/10.3897/natureconservation.42.54735
Figure S2. The distribution frequency of Betula species varies with the environment gradients
Supplementary material 1 from: Ancin-Murguzur FJ, Hausner VH (2020) Research gaps and trends in the Arctic tundra: a topic-modelling approach. One Ecosystem 5: e57117. https://doi.org/10.3897/oneeco.5.e57117
Supplementary table 1
Data for the strength-ductility enhancement of 316L stainless steel meta-crystal lattice of architected materials by harnessing the non-equilibrium solidification in metal additive manufacturing
<p>Raw (tabular) CALPHAD data for SLM produced 316L stainless steel.</p>
Supplementary material 1 from: Macher J-N, Drakou K, Papatheodoulou A, Hoorn B, Vasquez M (2020) The mitochondrial genomes of 11 aquatic macroinvertebrate species from Cyprus. Metabarcoding and Metagenomics 4: e58259. https://doi.org/10.3897/mbmg.4.58259
Scripts used for Megahit and Spades assemly of mitochornial genomes and nuclear 18S and 28S rRNAs
Supplementary material 3 from: Brassard F, Leong C-M, Chan H-H, Guénard B (2020) A new subterranean species and an updated checklist of Strumigenys (Hymenoptera, Formicidae) from Macao SAR, China, with a key to species of the Greater Bay Area. ZooKeys 970: 63-116. https://doi.org/10.3897/zookeys.970.54958
Figure S3. Schematic representation of ground nests used in the study
Supplementary material 1 from: Brassard F, Leong C-M, Chan H-H, Guénard B (2020) A new subterranean species and an updated checklist of Strumigenys (Hymenoptera, Formicidae) from Macao SAR, China, with a key to species of the Greater Bay Area. ZooKeys 970: 63-116. https://doi.org/10.3897/zookeys.970.54958
Figure S1. Map of Coloane Island showcasing the 21 sites sampled
Supplementary material 2 from: Brassard F, Leong C-M, Chan H-H, Guénard B (2020) A new subterranean species and an updated checklist of Strumigenys (Hymenoptera, Formicidae) from Macao SAR, China, with a key to species of the Greater Bay Area. ZooKeys 970: 63-116. https://doi.org/10.3897/zookeys.970.54958
Figure S2. Schematic representation of the subterranean sampling protocol used in the study
Supplementary material 4 from: Brassard F, Leong C-M, Chan H-H, Guénard B (2020) A new subterranean species and an updated checklist of Strumigenys (Hymenoptera, Formicidae) from Macao SAR, China, with a key to species of the Greater Bay Area. ZooKeys 970: 63-116. https://doi.org/10.3897/zookeys.970.54958
Figure S4. Transect design used for ground baiting
Exploring human splenic red pulp vasculature in virtual reality. Details of sheathed capillaries and the open capillary network. Supplementary material
<p>Supplementary files demonstrate our data in an interactive application. Please download und unpack the file, then launch file "start.bat". Please note that loading the original images takes some time. If you have a Steam VR headset, it is detected and used automatically.</p> <ol> <li><strong>Supplementary file 1 </strong><br> Localization of arteries and arterioles in ROI 4.<br> ROI 4 with all endothelia and some periarterial fibroblasts colored blue (CD34), smooth muscle alpha-actin (SMA) colored white and capillary sheaths depicted in green (CD271). Most arteries and arterioles can be localized by white color. White appears in a vertex of the blue reconstruction of CD34 staining, if a surface reconstructed for SMA labelling is closer than 8.75 µm to this vertex. Capillary sheaths connected to the selected arterioles (marked red in Suppl. file 2) are green and non-connected sheaths fed by other arterioles are dark green (CD271).</li> <li><strong>Supplementary file 2</strong><br> Relation of capillary sheaths to terminal arterioles in ROI4.<br> ROI 4 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). Follicular dendritic cells (FDCs) in follicles are light green (CD271). This file corresponds to Fig. 3 and to Suppl. Video 1-3.</li> <li><strong>Supplementary file 3</strong><br> Relation of capillary sheaths to terminal arterioles in ROI 2.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). FDCs in follicles are light green (CD271). This file corresponds to Fig. 4a,b.</li> <li><strong>Supplementary file 4</strong><br> Relation of capillary sheaths to terminal arterioles in ROI 1.<br> ROI 1 with all endothelia and some periarterial fibroblasts colored blue (CD34), selected terminal artery and terminal arterioles manually labelled red and capillary sheaths connected to the labelled arterioles in green (CD271). Non-connected sheaths fed by other arterioles are dark green (CD271). FDCs in follicles are light green (CD271)</li> <li><strong>Supplementary file 5</strong><br> White pulp in 3D (ROI 3).<br> ROI 3 with all endothelia and some periarterial fibroblasts colored blue (CD34) and capillary sheaths in green (CD271). FDCs in follicles are light green (CD271). Arteries and terminal arterioles were not labelled.</li> <li><strong>Supplementary file 6 </strong><br> Sheathed capillaries exhibit short open-ended side branches.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34) and with selected terminal artery and terminal arterioles labelled light blue. Capillary sheaths connected to the selected arterioles are green (CD271) and unconnected sheaths are dark green (CD271). The open-ended side branches of the selected sheathed capillaries were manually labelled red and are visualized in their entire length. This file corresponds to Fig. 4c.</li> <li><strong>Supplementary file 7</strong><br> Terminal arterioles may have a few unsheathed connections to the red pulp capillary network.<br> ROI 2 with all endothelia and some periarterial fibroblasts colored blue (CD34) and with selected terminal artery and terminal arterioles labelled light blue. Capillary sheaths connected to the selected arterioles are green (CD271) and unconnected sheaths are dark green (CD271). Connections from a terminal arteriole to the red pulp capillary network lacking sheaths were manually labelled red. A part of the capillary network after the connection is colored yellow. This file corresponds to Figs. 4d,e.</li> <li><strong>Supplementary file 8</strong><br> B-lymphocytes accumulate around terminal arteries and in/around capillary sheaths.<br> Lower part of ROI 2 with selected terminal artery and terminal arterioles colored blue and connected capillary sheaths in green (CD271). B-lymphocytes were digitally reduced in number and automatically labelled red (CD20). The B-cells accumulate around a terminal artery and around (and inside) capillary sheaths. This file corresponds to Fig. 6 and to Suppl. Video 4.</li> <li><strong>Supplementary file 9</strong><br> Reduction of B-lymphocytes is inevitable for visualization.<br> ROI 2 showing Suppl. file 8 integrated into the entire ROI 2. A large number of B-lymphocytes is present in the red pulp of ROI 2 (CD20 visualized in white). These cells are self-occluding and necessitate reducing B-lymphocytes as shown in Suppl. Fig. 8 to highlight accumulations.</li> <li><strong>Supplementary file 10</strong><br> Red pulp venule with potential connections to capillary network.<br> A red pulp venule with capillaries in ROI 1. Capillary and venous endothelium is shown in light blue (CD34). A part of a red pulp venule with potential contributing capillaries (CD34, blue) was manually selected in addition to a terminal arteriole (light red). The capillary sheaths connected with this arteriole are green (CD271). Non-connected sheaths are dark green (CD 271) and FDCs in follicles are light green (CD271). Capillaries from the red pulp network, which appear to be connected to the venule were manually colored red. Two of the red capillaries seem to originate from a sheathed capillary. This file corresponds to Fig. 5a-d and to Suppl. Video 5.</li> </ol> <p>Bounding boxes for all files have a side length of 1 mm with exception of Suppl. File 8 which is 800 (b) x 620 (h) x 614 (d) µm.</p> <p>As for videos, each video is in three quality settings:</p> <ul> <li>..._h264_8bit.mov is the most generic H.264 HQ setting. Should play everywhere, also with QuickTime.</li> <li>..._h265_10bit.mov is the 10 bit video version, encoded with HEVC encoder. Should be the same or higher quality with less size. Might not play everywhere.</li> <li>..._h264_8bit_small.mov is the H.264 LQ setting with much lower resolution, use this if your download bandwidth is limited.</li> </ul> <p>Now, there are 5 videos to supplement the submission:</p> <ol> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%201%20-%20sheath%20video%20r4%20full%20h264%208bit.mov">suppl video 1 - sheath r4 full .</a>.. shows the region ROI4 with full vasculature, similar to Fig. 3 of the manuscript,</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%202%20-%20sheath%20video%20r4%20select%20h264%208bit.mov">suppl video 2 - sheath r4 select .</a>... shows only the selection of the vasculature from ROI4, similar to Fig. 3 of the manuscript,</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%203%20-%20sheath%20video%20r4%20clipping%20h264%208bit.mov">suppl video 3 - sheath r4 clipping .</a>... showcases the front plane clipping technique we used for diagnostics in VR. This demonstrates the contents of Fig. 8 in dynamics.</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%204%20-%20sheath%20video%20r2%20bcell%20h264%208bit.mov">suppl video 4 - sheath bcell .</a>.. shows the selection of the B-cells to supplement Fig. 6 in the manuscript.</li> <li><a href="https://zenodo.org/record/3993324/files/suppl%20video%205%20-%20sheath%20video%20r1%20vene%20h264%208bit.mov">suppl video 5 - sheath r1 vene .</a>.. shows a red pulp venule and its apparent connections, this supplements Fig. 5 of the manuscript.</li> </ol>
Supplementary material 1 from: Migliorini D, Luchi N, Pepori AL, Pecori F, Aglietti C, Maccioni F, Munck I, Wyka S, Broders K, Wingfield MJ, Santini A (2020) Caliciopsis moriondi, a new species for a fungus long confused with the pine pathogen C. pinea. MycoKeys 73: 87-108. https://doi.org/10.3897/mycokeys.73.53028
Figure S1. One of the most parsimonious trees from EF1-α sequence datasets
Supplementary material 2 from: Migliorini D, Luchi N, Pepori AL, Pecori F, Aglietti C, Maccioni F, Munck I, Wyka S, Broders K, Wingfield MJ, Santini A (2020) Caliciopsis moriondi, a new species for a fungus long confused with the pine pathogen C. pinea. MycoKeys 73: 87-108. https://doi.org/10.3897/mycokeys.73.53028
Figure S2. One of the most parsimonious trees from Bt1 sequence datasets
Supplementary material 1 from: Pitriana P, Jones DS, Corbari L, von Rintelen K (2020) New insights gained from museum collections: Deep-sea barnacles (Crustacea, Cirripedia, Thoracica) in the Muséum National d'Histoire Naturelle, Paris, collected during the Karubar expedition in 1991. Zoosystematics and Evolution 96(2): 649-698. https://doi.org/10.3897/zse.96.55733
Tables S1–S39
Supplementary material 4 from: Hardisty A, Livermore L, Walton S, Woodburn M, Hardy H (2020) Costbook of the digitisation infrastructure of DiSSCo. Research Ideas and Outcomes 6: e58915. https://doi.org/10.3897/rio.6.e58915
Cost Books - Original Responses
Supplementary material 5 from: Hardisty A, Livermore L, Walton S, Woodburn M, Hardy H (2020) Costbook of the digitisation infrastructure of DiSSCo. Research Ideas and Outcomes 6: e58915. https://doi.org/10.3897/rio.6.e58915
Cost books - RBINS
Supplementary material 3 from: Hardisty A, Livermore L, Walton S, Woodburn M, Hardy H (2020) Costbook of the digitisation infrastructure of DiSSCo. Research Ideas and Outcomes 6: e58915. https://doi.org/10.3897/rio.6.e58915
Cost Books - Flattened Data
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.