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779
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ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Hypoxia-induced CTCF mediates alternative splicing via coupling chromatin looping and RNA Pol II pause to promote EMT in breast cancer
GEO Series GSE216843. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning [GRO-Seq]
GEO Series GSE142780. Mus musculus. 12 samples. Type: Other.
Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements [ChIP-seq]
GEO Series GSE198762. Drosophila melanogaster. 32 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-Binding Elements Mediate Accessibility of RAG Substrates During Chromatin Scanning [dataset 3]
GEO Series GSE113022. Mus musculus. 35 samples. Type: Other.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [V]
GEO Series GSE139679. Homo sapiens; Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF acetylation at lysine 20 is required for early cardiac mesoderm differentiation from embryonic stem cells [ATAC-Seq]
GEO Series GSE181702. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CP190 and CTCF mediated enhancer blocking is augmented by SUMOylation
GEO Series GSE96581. Drosophila melanogaster. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
PBK/TOPK mediates Ikaros, Aiolos and CTCF displacement from mitotic chromosomes and alters chromatin accessibility at selected C2H2-zinc finger protein binding sites
GEO Series GSE266554. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Batf pioneers the reorganization of chromatin in developing effector T cells via Ets1-dependent recruitment of Ctcf
GEO Series GSE123209. Mus musculus. 109 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Acute depletion of CTCF directly affects MYC regulation through loss of enhancer-promoter looping
GEO Series GSE126619. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation [Capture-C]
GEO Series GSE169548. Mus musculus. 6 samples. Type: Other.
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [scRNA-seq]
GEO Series GSE272479. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
Hoxblinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia [CTCF-HiChIP-seq]
GEO Series GSE283303. Mus musculus. 2 samples. Type: Other.
Loss of CTCF reveals basic properties of post-mitotic epigenomes and induces heart failure [HiC-seq]
GEO Series GSE96692. Mus musculus. 3 samples. Type: Other.
Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells [CTCF-HA-ChIP]
GEO Series GSE261176. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Ectopic recruitment of the CTCF N-terminal domain with two proximal zinc-finger domains as a tool for 3D genome engineering [Hi-C]
GEO Series GSE300305. Homo sapiens. 12 samples. Type: Other.
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL and PDS5 proteins
GEO Series GSE102884. Homo sapiens. 30 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
GRO-seq on MCF7 cells induced with sgRNA vectors targeting CTCF binding elements
GEO Series GSE124572. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Effect of CTCF and Rad21 knockdown on cell and KSHV gene expression
GEO Series GSE138105. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The BET protein BRD2 cooperates with CTCF to enforce a transcriptional boundary
GEO Series GSE80527. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.