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Data from: Genetic structure and diversity of the endangered fir tree of Lebanon (Abies cilicica Carr.): implications for conservation
The threatened conifer Abies cilicica currently persists in Lebanon in geographically isolated forest patches. The impact of demographic and evolutionary processes on population genetic diversity and structure were assessed using 10 nuclear microsatellite loci. All remnant 15 local populations revealed a low genetic variation but a high recent effective population size. FST-based measures of population genetic differentiation revealed a low spatial genetic structure, but Bayesian analysis of population structure identified a significant Northeast-Southwest population structure. Populations showed significant but weak isolation-by-distance, indicating non-equilibrium conditions between dispersal and genetic drift. Bayesian assignment tests detected an asymmetric Northeast-Southwest migration involving some long-distance dispersal events. We suggest that the persistence and Northeast-Southwest geographic structure of Abies cilicica in Lebanon is the result of at least two demographic processes during its recent evolutionary history: (1) recent migration to currently marginal populations and (2) local persistence through altitudinal shifts along a mountainous topography. These results might help us better understand the mechanisms involved in the species response to expected climate change.
Data from: Genetic variation and population structure in the endangered Hermann's tortoise: the roles of geography and human-mediated processes
The Hermanni's tortoise (Testudo hermanni) is an endangered land tortoise distributed in disjoint populations across Mediterranean Europe. We investigated its genetic variation by typing one mitochondrial locus and nine nuclear microsatellites in approximately 300 individuals from 22 localities. Our goal was to understand the relative impact of natural and human-mediated processes in shaping the genetic structure, and to identify the genetic priorities for the conservation of this species. We found that i) all geographic areas are highly differentiated, mainly as a function of their distance but with a clear genetic discontinuity (Fst values larger than 0.4) between the Eastern and the Western subspecies; ii) the contact zone between subspecies is located farthest to the west than previously believed, and it probably coincides with the delta of the largest Italian river; iii) extinction events due to climatic conditions in the Upper Palaeolithic and subsequent human-mediated translocations in the Neolithic possibly explain the unexpected similarity among Spain, Sicily and Corsica. For conservation purposes, the large majority of genetic pools appears autochthonous, although hybridization among subspecies, related to extensive 20th century trade of tortoises across Europe, is observed in Spain and some Italian samples. Most populations do not seem at immediate risk of low genetic variation, except the French population, which has very low nuclear genetic diversity (heterozygosity = 0.25) and where 50 out of 51 sampled animals shared the same mitochondrial sequence. In general, restocking and reintroduction plans should carefully consider the genetic background of the individuals.
Data from: Genetic evidence of hybridization between the critically endangered Cuban crocodile and the American crocodile: implications for population history and in situ/ex situ conservation
Inter-specific hybridization may be especially detrimental when one species is extremely rare and the other is abundant owing to the potential for genetic swamping. The Cuban crocodile (Crocodylus rhombifer) is a critically endangered island endemic largely restricted to Zapata Swamp, where it is sympatric with the widespread American crocodile (C. acutus). An on-island, C. rhombifer captive breeding program is underway with the goals of maintaining taxonomic integrity and providing a source of individuals for reintroduction, but its conservation value is limited by lack of genetic information. Here we collected mtDNA haplotypic and nuclear genotypic data from wild and captive C. rhombifer and C. acutus in Cuba to: (1) investigate the degree of inter-specific hybridization in natural (in situ) and captive (ex situ) populations; (2) quantify the extent, distribution and in situ representation of genetic variation ex situ; and (3) reconstruct founder relatedness to inform management. We found high levels of hybridization in the wild (49.1%) and captivity (16.1%), and additional evidence for a cryptic lineage of C. acutus in the Antilles. We detected marginally higher observed heterozygosity and allelic diversity ex situ relative to the wild population, with captive C. rhombifer exhibiting over twice the frequency of private alleles. Although mean relatedness was high in captivity, we identified 37 genetically important individuals that possessed individual mean kinship (MK) values lower than the population MK. Overall, these results will guide long-term conservation management of Cuban crocodiles for maintaining the genetic integrity and viability of this species of high global conservation value.
Data from: Pathology and epidemiology of ceruminous gland tumors among endangered Santa Catalina Island foxes (Urocyon littoralis catalinae) in the Channel Islands, USA
In this study, we examined the prevalence, pathology, and epidemiology of tumors in free-ranging island foxes occurring on three islands in the California Channel Islands, USA. We found a remarkably high prevalence of ceruminous gland tumors in endangered foxes (Urocyon littoralis catalinae) occurring on Santa Catalina Island (SCA) - 48.9% of the dead foxes examined from 2001-2008 had tumors in their ears, and tumors were found in 52.2% of randomly-selected mature (≥ 4 years) foxes captured in 2007-2008, representing one of the highest prevalences of tumors ever documented in a wildlife population. In contrast, no tumors were detected in foxes from San Nicolas Island or San Clemente Island, although ear mites (Otodectes cynotis), a predisposing factor for ceruminous gland tumors in dogs and cats, were highly prevalent on all three islands. On SCA, otitis externa secondary to ear mite infection was highly correlated with ceruminous gland hyperplasia (CGH), and tumors were significantly associated with the severity of CGH, ceruminous gland dysplasia, and age group (older foxes). We propose a conceptual model for the formation of ceruminous gland tumors in foxes on SCA that is based on persistent, ubiquitous infection with ear mites, and an innate, over exuberant inflammatory and hyperplastic response of SCA foxes to these mites. Foxes on SCA are now opportunistically treated with acaricides in an attempt to reduce mite infections and the morbidity and mortality associated with this highly prevalent tumor.
Data from: Reconstruction of the historical range alters niche estimates in an endangered rodent
Defining historical baselines is critical for species conservation. Under the niche reduction hypothesis, species in decline may be restricted disproportionately from parts of their environmental niche. This bias likely has important implications for modeling species' distributions if only contemporary occurrences (i.e. post‐range reduction) are used, because suitable habitat will be classified as unsuitable. Unfortunately, robust historical occurrence data is rarely available for sensitive species. In this study, we documented historical locations of the endangered, keystone giant kangaroo rat Dipodomys ingens by examining aerial imagery for burrow mounds. These burrow mounds are readily identifiable and distinguishable from other soil disturbances. We found giant kangaroo rat burrows well outside the currently accepted estimate of their historical distribution. Following the niche reduction hypothesis, we found that giant kangaroo rats have been extirpated from the flattest, hottest, driest parts of their range due to agricultural conversion. This reduction in their realized niche led to significant changes between historical and contemporary models of their distribution. We found that giant kangaroo rats may have occupied up to 56% more habitat historically than currently believed. Our results provide new guidance for managers working on restoration and habitat protection for this ecosystem engineer. This study highlights the critical importance of modeling historical distributions using the entire environmental niche once occupied by species of conservation need.
Data from: Spatial variation buffers temporal fluctuations in early juvenile survival for an endangered Pacific salmon
1. Spatial, phenotypic, and genetic diversity at relatively small scales can buffer species against large-scale processes such as climate change that tend to synchronize populations and increase temporal variability in overall abundance or production. This portfolio effect generally results in improved biological and economic outcomes for managed species. Previous evidence for the portfolio effect in salmonids has arisen from examinations of time series of adult abundance, but we lack evidence of spatial buffering of temporal variability in demographic rates such as survival of juveniles during their first year of life. 2. We therefore use density-dependent population models with multiple random effects to represent synchronous (similar among populations) and asynchronous (different among populations) temporal variability as well as spatial variability in survival. These are fitted to 25 years of survey data for breeding adults and surviving juveniles from 15 demographically distinct populations of Chinook salmon (Oncorhynchus tshawytscha) within a single metapopulation in the Snake River in Idaho, USA. 3. Model selection identifies the most support for the model that included both synchronous and asynchronous temporal variability, in addition to spatial variability. Asynchronous variability (log-SD = 0.55) is approximately equal in magnitude to synchronous temporal variability (log-SD = 0.67), but much lower than spatial variability (log-SD = 1.11). We also show that the pairwise correlation coefficient, a common measure of population synchrony, is approximated by the estimated ratio of shared and total variance, where both approaches yield a synchrony estimate of 0.59. We therefore find evidence for spatial buffering of temporal variability in early juvenile survival, although between-population variability that persists over time is also large. 4. We conclude that spatial variability decreases interannual changes in overall juvenile production, which suggests that conservation and restoration of spatial diversity will improve population persistence for this metapopulation. However, the exact magnitude of spatial buffering depends upon demographic parameters such as adult survival that may vary among populations, and is proposed as an area of future research using hierarchical life cycle models. We recommend that future sampling of this metapopulation employ a repeated-measure sampling design to improve estimation of early juvenile carrying capacity.
Data from: Circumpolar diversity and geographic differentiation of mtDNA in the critically endangered Antarctic blue whale (Balaenoptera musculus intermedia)
The Antarctic blue whale (Balaenoptera musculus intermedia) was hunted to near extinction between 1904 and 1972, declining from an estimated initial abundance of more than 250,000 to fewer than 400. Here, we describe mtDNA control region diversity and geographic differentiation in the surviving population of the Antarctic blue whale, using 218 biopsy samples collected under the auspices of the International Whaling Commission (IWC) during research cruises from 1990–2009. Microsatellite genotypes and mtDNA sequences identified 166 individuals among the 218 samples and documented movement of a small number of individuals, including a female that traveled at least 6,650 km or 131° longitude over four years. mtDNA sequences from the 166 individuals were aligned with published sequences from 17 additional individuals, resolving 52 unique haplotypes from a consensus length of 410 bp. From this minimum census, a rarefaction analysis predicted that only 72 haplotypes (95% CL, 64, 86) have survived in the contemporary population of Antarctic blue whales. However, haplotype diversity was relatively high (0.968±0.004), perhaps as a result of the longevity of blue whales and the relatively recent timing of the bottleneck. Despite the potential for circumpolar dispersal, we found significant differentiation in mtDNA diversity (FST = 0.032, p<0.005) and microsatellite alleles (FST = 0.005, p<0.05) among the six Antarctic Areas historically used by the IWC for management of blue whales.
Data from: Low major histocompatibility complex class II variation in the endangered Indo-Pacific humpback dolphin (Sousa chinensis): inferences about the role of balancing selection
It has been widely reported that the major histocompatibility complex (MHC) is under balancing selection due to its immune function across terrestrial and aquatic mammals. The comprehensive studies at MHC and other neutral loci could give us a synthetic evaluation about the major force determining genetic diversity of species. Previously, a low level of genetic diversity has been reported among the Indo-Pacific humpback dolphin (Sousa chinensis) in the Pearl River Estuary (PRE) using both mitochondrial marker and microsatellite loci. Here, the expression and sequence polymorphism of 2 MHC class II genes (DQB and DRB) in 32 S. chinensis from PRE collected between 2003 and 2011 were investigated. High ratios of non-synonymous to synonymous substitution rates, codon-based selection analysis, and trans-species polymorphism (TSP) support the hypothesis that balancing selection acted on S. chinensis MHC sequences. However, only 2 haplotypes were detected at either DQB or DRB loci. Moreover, the lack of deviation from the Hardy–Weinberg expectation at DRB locus combined with the relatively low heterozygosity at both DQB locus and microsatellite loci suggested that balancing selection might not be sufficient, which further suggested that genetic drift associated with historical bottlenecks was not mitigated by balancing selection in terms of the loss of MHC and neutral variation in S. chinensis. The combined results highlighted the importance of maintaining the genetic diversity of the endangered S. chinensis.
Data from: Species discovery and validation in a cryptic radiation of endangered primates: coalescent-based species delimitation in Madagascar's mouse lemurs
Implementation of the coalescent model in a Bayesian framework is an emerging strength in genetically based species delimitation studies. By providing an objective measure of species diagnosis, these methods represent a quantitative enhancement to the analysis of multilocus data, and complement more traditional methods based on phenotypic and ecological characteristics. Recognized as two species 20 years ago, mouse lemurs (genus Microcebus) now comprise more than 20 species, largely diagnosed from mtDNA sequence data. With each new species description, enthusiasm has been tempered with scientific scepticism. Here, we present a statistically justified and unbiased Bayesian approach towards mouse lemur species delimitation. We perform validation tests using multilocus sequence data and two methodologies: (i) reverse-jump Markov chain Monte Carlo sampling to assess the likelihood of different models defined a priori by a guide tree, and (ii) a Bayes factor delimitation test that compares different species-tree models without a guide tree. We assess the sensitivity of these methods using randomized individual assignments, which has been used in bpp studies, but not with Bayes factor delimitation tests. Our results validate previously diagnosed taxa, as well as new species hypotheses, resulting in support for three new mouse lemur species. As the challenge of multiple researchers using differing criteria to describe diversity is not unique to Microcebus, the methods used here have significant potential for clarifying diversity in other taxonomic groups. We echo previous studies in advocating that multiple lines of evidence, including use of the coalescent model, should be trusted to delimit new species.
Data from: Assessing changes in distribution of the endangered snow leopard Panthera uncia and its wild prey over 2 decades in the Indian Himalaya through interview-based occupancy surveys
Understanding species distributions, patterns of change and threats can form the basis for assessing the conservation status of elusive species that are difficult to survey. The snow leopard Panthera uncia is the top predator of the Central and South Asian mountains. Knowledge of the distribution and status of this elusive felid and its wild prey is limited. Using recall-based key-informant interviews we estimated site use by snow leopards and their primary wild prey, blue sheep Pseudois nayaur and Asiatic ibex Capra sibirica, across two time periods (past: 1985–1992; recent: 2008–2012) in the state of Himachal Pradesh, India. We also conducted a threat assessment for the recent period. Probability of site use was similar across the two time periods for snow leopards, blue sheep and ibex, whereas for wild prey (blue sheep and ibex combined) overall there was an 8% contraction. Although our surveys were conducted in areas within the presumed distribution range of the snow leopard, we found snow leopards were using only 75% of the area (14,616 km2). Blue sheep and ibex had distinct distribution ranges. Snow leopards and their wild prey were not restricted to protected areas, which encompassed only 17% of their distribution within the study area. Migratory livestock grazing was pervasive across ibex distribution range and was the most widespread and serious conservation threat. Depredation by free-ranging dogs, and illegal hunting and wildlife trade were the other severe threats. Our results underscore the importance of community-based, landscape-scale conservation approaches and caution against reliance on geophysical and opinion-based distribution maps that have been used to estimate national and global snow leopard ranges.
Data from: Analyses of phenotypic differentiations among South Georgian Diving Petrel (Pelecanoides georgicus) populations reveal an undescribed and highly endangered species from New Zealand
Unresolved taxonomy of threatened species is problematic for conservation as the field relies on species being distinct taxonomic units. Differences in breeding habitat and results from a preliminary molecular analysis indicated that the New Zealand population of the South Georgian Diving Petrel (Pelecanoides georgicus) was a distinct, yet undescribed, species. We measured 11 biometric characters and scored eight plumage characters in 143 live birds and 64 study skins originating from most populations of P. georgicus, to assess their taxonomic relationships. We analysed differences with principal component analyses (PCA), factorial ANOVAs, and Kruskal-Wallis rank sum tests. Results show that individuals from New Zealand differ significantly from P. georgicus from all other populations as following: 1) longer wings, 2) longer outer tail feathers, 3) deeper bills, 4) longer heads, 5) longer tarsi, 6) limited collar extent, 7) greater extent of contrasting scapulars, 8) larger contrasting markings on the secondaries, 9) paler ear coverts, 10) paler collars, and 11) paler flanks. Furthermore, we used a species delimitation test with quantitative phenotypic criteria; results reveal that the New Zealand population of P. georgicus indeed merits species status. We hereby name this new species Pelecanoides whenuahouensis sp. nov. Due to severe reductions in its range and the very low number of remaining birds (~150 individuals limited to a single breeding colony on Codfish Island/Whenua Hou) the species warrants listing as 'Critically Endangered'.
Data from: Scope for genetic rescue of an endangered subspecies though re-establishing natural gene flow with another subspecies
Genetic diversity is positively linked to the viability and evolutionary potential of species but is often compromised in threatened taxa. Genetic rescue by gene flow from a more diverse or differentiated source population of the same species can be an effective strategy for alleviating inbreeding depression and boosting evolutionary potential. The helmeted honeyeater Lichenostomus melanops cassidix is a critically endangered subspecies of the common yellow-tufted honeyeater. Cassidix has declined to a single wild population of ~130 birds, despite being subject to intensive population management over recent decades. We assessed changes in microsatellite diversity in cassidix over the last four decades and used population viability analysis to explore whether genetic rescue through hybridization with the neighbouring Lichenostomus melanops gippslandicus subspecies constitutes a viable conservation strategy. The contemporary cassidix population is characterized by low genetic diversity and effective population size (Ne < 50), suggesting it is vulnerable to inbreeding depression and will have limited capacity to evolve to changing environments. We find that gene flow from gippslandicus to cassidix has declined substantially relative to pre-1990 levels and argue that natural levels of gene flow between the two subspecies should be restored. Allowing gene flow (~4 migrants per generation) from gippslandicus into cassidix (i.e. genetic rescue), in combination with continued annual release of captive-bred cassidix (i.e. demographic rescue), should lead to positive demographic and genetic outcomes. Although we consider the risk of outbreeding depression to be low, we recommend that genetic rescue be managed within the context of the captive breeding programme, with monitoring of outcomes.
Data from: Restoration of endangered fen communities: the ambiguity of iron-phosphorus binding and phosphorus limitation
1.Low phosphorus (P) availability limits plant biomass production in fens, which is a prerequisite for the persistence of many endangered plant species. We hypothesized that P limitation is linked to soil iron (Fe) content and soil Fe:P ratios as iron compounds provide binding sites for dissolved P, presumably reducing P availability to plants. 2.We sampled 30 fens in a trans-European field survey to determine how soil Fe pools relate to pools of P and Fe-bound P, and we measured vegetation P uptake and N:P ratio to assess where P limitation occurs. Next, we determined P uptake by Carex rostrata in experimental fen mesocosms to investigate interactive effects of soil Fe- and P pools (and -NDASH-fractions) and water levels (drained or rewetted). 3.The field survey revealed that soil P pools correlate positively with soil Fe pools, regardless of fen degradation level, location, or sampling depth. Moreover, soil Fe- and P pools correlated positively with P uptake by the vegetation and negatively with vegetation N:P ratios. Generally, N:P ratios dropped below 10 g g−1 whenever thresholds of 15 mmol Fe L−1 soil and 3.3 mmol P L−1 soil were exceeded. Endangered fen species mainly thrived in Fe- (and thus P-) poor fens. 4.The mesocosm experiment further showed that interactions between water levels and P pools determined plant P uptake: although fen rewetting led to an overall increase in P uptake, plants that had grown on drained Fe-rich soils with large acid-extractable P pools (>1.6 mmol Pacid L−1) could still sequester large quantities of P. Soil Fe:P ratio had no effect on P uptake. 5.Synthesis and applications. Our findings have important implications for the management and restoration of endangered fen communities. We demonstrated the existence of an iron-phosphorus (Fe-P) binding ambiguity in fens: large Fe pools "trap" mobile P, thereby enhancing overall P availability to plants rather than diminishing it. For P limitation we suggest an empirical threshold of < 3.3 mmol P L−1 soil, which is mainly found in Fe-poor fens. Restoring fens by rewetting increases the relative availability of P and may not always result in favourable conditions for endangered fen communities. Rewetting of drained fens is most likely to be successful if soil P and Fe pools are well below 3.3 mmol L−1 and 15 mmol L−1 respectively.
Data from: Den site selection, pack composition, and reproductive success in endangered African wild dogs
Habitat quality is often assumed to be directly related to increased consumer density, but such assumptions cannot be made without supporting demographic data that indicate improved fitness. Habitat selection might be especially important for denning species, where vulnerable offspring are confined to a single location for extended periods, but the effect of den choice on the reproductive success of denning species is poorly understood. By combining airborne high-resolution Light Detection and Ranging (LiDAR) measurements with data on pack composition, we investigated den site selection by endangered African wild dogs in Hluhluwe-iMfolozi Park, South Africa, examining whether habitat selection based on ecological factors resulted in increased litter sizes and thus reproductive success compared with social factors known to be important. Although there was selection for den sites in areas of increased terrain ruggedness and vegetation density, only vegetation density was associated with larger litter sizes and translated into increased reproductive success. Moreover, pack size was only influential when a minimum vegetation density around den sites was achieved, indicating that although social variables have a powerful effect on reproductive success, they are mediated by ecological factors defining habitat quality. Our results demonstrate the importance of distinguishing between density- and fitness-based indicators of habitat quality, and how this can affect management actions, particularly for endangered species conservation.
Data from: Isodars unveil asymmetric effects on habitat use caused by competition between two endangered species
In order for competing species to coexist, segregation on some ecological niche component is required and is often mediated by differential habitat use. When unequal competitors are involved, the dominant species tends to displace the subordinate one to its less preferred habitat. Here, we use habitat isodars, an approach which reflects evolutionary stable strategies of habitat selection, to evaluate whether interspecific competition between two competing species with distinct habitat preferences, the little bustard Tetrax tetrax and the great bustard Otis tarda, modulates their habitat use. Field data on these endangered species demonstrate that unequal competitors can coexist without completely segregating on their preferred habitats. The negatively sloped isodar of the subordinate little bustard unveils its competition with the dominant great bustard. Interference from great bustards in secondary cereal habitats reinforces use of preferred natural habitat by little bustards. Studies of density-dependent habitat selection by a single-species can thus aid in identifying the effects of competition on community composition, and guide the conservation of at-risk species. Isodars, in particular, represent a promising method to gain clear knowledge on interspecific competition for species in which experimental manipulations are not feasible.
Data from: Fallow management increases habitat suitability for endangered steppe bird species through changes in vegetation structure
In the face of the dramatic worldwide decline of farmland bird populations, the preservation of fallow fields is a conservation measure encouraged through subsidies (e.g. agri‐environmental schemes, AES). Beyond the general benefits of increasing fallow availability for endangered steppe bird populations, there is a lack of knowledge on how fallow management can contribute to meeting species‐specific habitat requirements. We used occurrence data from three steppe bird species protected at the EU level (Stone Curlew Burhinus oedicnemus, Little Bustard Tetrax tetrax, and Calandra Lark Melanocorypha calandra), framed in a quasi‐experimental approach covering an unprecedented spatio‐temporal scale that included 612 fallow fields over a three‐year study period in an agricultural Mediterranean landscape (Spain). We used path analysis to explore the mechanisms by which common agricultural practices affected species‐specific occurrence. We examined partial effects of agricultural practices on vegetation structure and food availability, and the partial effect of these variables on bird occurrence compared to control fields (no agricultural practices applied). Agricultural practices had a significant effect on the presence of the three studied species. Through changes in the vegetation structure, Shredding + Herbicide and Tillage increased the occurrence of the Stone Curlew and Shredding increased the occurrence of the Little Bustard. The occurrence of Calandra Lark was mostly affected by landscape variables. Synthesis and applications. Our study highlights that, in addition to the acknowledged positive role of fallow availability, applying a limited number of specific agricultural practices before the breeding season can further increase bird occurrence by changing the vegetation structure. Using path analysis, we explored the mechanisms driving the occurrence of three steppe bird species under different agricultural practices. Such information is key to providing specific recommendations for future conservation management of endangered species within agri‐environmental schemes.
Figure 8 in Redescription of the highly endangered species Scutellastra mexicana (Broderip & G.B. Sowerby I, 1829) (Mollusca, Gastropoda)
Figure 8. Consensus tree of the families of Patellidae and Nacellidae with the position of S. mexicana using maximum likelihood and Bayesian methods based on the mitochondrial COI mtDNA gene. The bootstrap values/posterior probabilities (ML/BI) are indicated under the principal nodes. The taxon names are followed by their GenBank accession numbers (S. mexicana specimens were sequenced in the present study). The shaded area indicates the position of S. mexicana.
Figure 7 in Redescription of the highly endangered species Scutellastra mexicana (Broderip & G.B. Sowerby I, 1829) (Mollusca, Gastropoda)
Figure 7. Consensus tree of the families Patellidae and Nacellidae with the position of S. mexicana using maximum likelihood and Bayesian methods based on partial 16S rRNA. The bootstrap values/ posterior probabilities (ML/BI) are indicated under the principal nodes. The taxon names are followed by their GenBank accession numbers (specimen AF058235 belonging to Scutellastra mexicana was also downloaded from GenBank, whereas the other S. mexicana specimens were sequenced in the present study). The shaded area indicates the position of S. mexicana.
Figure 3 in Redescription of the highly endangered species Scutellastra mexicana (Broderip & G.B. Sowerby I, 1829) (Mollusca, Gastropoda)
Figure 3. Small specimen BR21. (a) Dorsal view of the shell of the small specimen. (b) Ventral view of the shell of the small specimen. (c) Ventral view of the soft tissue parts showing a diagnostic feature of small specimens, i.e. a 'scalloped' edge of the mantle. Scale bar: 5 cms.
Figure 5 in Redescription of the highly endangered species Scutellastra mexicana (Broderip & G.B. Sowerby I, 1829) (Mollusca, Gastropoda)
Figure 5. (a) SEM photograph of a radula. Scale bar: 1 mm. (b) Detail of the pluricuspid lateral tooth (black arrow) and marginal teeth (white arrows). Scale bar: 400 µm. (c) Optical microscope photograph of the radula. Scale bar: 1 mm.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.