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12,393 results for “Materiality”
Data set for the fauna material excavated at the Liang Abu site (East Kalimantan, Indonesia)
<p>Data set for the fauna material excavated at the Liang Abu site (East Kalimanta, Indonesia): count by subphylum, class, order, family, genus, and species for the squares 11Ec, 11Ed, and12Eb.</p>
Data set for the lithic material excavated at the Liang Abu site (East Kalimantan, Indonesia)
<p>Three tables describing the lithic material excavated at the Liang Abu site (East Kalimantan, Indonesia):</p> <ul> <li>abu-lithic-class.csv: count by class by stratigraphic layer</li> <li>abu-lithic-spatial-distribution.csv: count by square and stratigraphic layer</li> <li>abu-lithic-flakes.csv: morphometric values of the flakes</li> </ul>
Supplementary Materials - videos - for 'The root to the Galápagos mantle plume on the core-mantle boundary' by Cottaar et al.
<p>Movie S1.</p> <p>Animation of interaction between the wavefront and the ultra-low velocity zone for Event A using a modified version of the wavefront tracker by (Hauser <em>et al.</em>, 2008). Only horizontal propagation is considered. Event location - blue star, seismometer locations – blue triangles. Velocities show the shear wave velocity deviations at 2800 km depth from the tomographic SEMUCB-WM1 (French and Romanowicz, 2014) and the ultra-low velocity zone. </p> <p> </p> <p>Movie S2.</p> <p>Animation of interaction between the wavefront and the ultra-low velocity zone for Event B using a modified version of the wavefront tracker by (Hauser <em>et al.</em>, 2008). Only horizontal propagation is considered. Event location - blue star, seismometer locations – blue triangles. Velocities show the shear wave velocity deviations at 2800 km depth from the tomographic SEMUCB-WM1 (French and Romanowicz, 2014) and the ultra-low velocity zone. </p> <p> </p> <p>Movie S3.</p> <p>Animation of interaction between the wavefront and the ultra-low velocity zone for Event C using a modified version of the wavefront tracker by (Hauser <em>et al.</em>, 2008). Only horizontal propagation is considered. Event location - blue star, seismometer locations – blue triangles. Velocities show the shear wave velocity deviations at 2800 km depth from the tomographic SEMUCB-WM1 (French and Romanowicz, 2014) and the ultra-low velocity zone. </p> <p> </p> <p>Movie S4.</p> <p>Animation of interaction between the wavefront and the ultra-low velocity zone for Event D using a modified version of the wavefront tracker by (Hauser <em>et al.</em>, 2008). Only horizontal propagation is considered. Event location - blue star, seismometer locations – blue triangles. Velocities show the shear wave velocity deviations at 2800 km depth from the tomographic SEMUCB-WM1 (French and Romanowicz, 2014) and the ultra-low velocity zone. </p>
FIG. 14 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 14. — Phylogenetic relationships of Incadelphys among other metatherians:strict consensus tree (Consistency index [CI] = 0.401; Retention index [RI] = 0.609) of the two shortest trees resulting from the analysis with downweighted homoplastic characters (with Goloboff k = 3); black number above nodes indicate the minimum and maximum numbers of synapomorphies. The name of clade designated as "SAMI" is a working term composed with the initials of the four genera it includes: Szalinia, Aenigmadelphys, Marmosopsis, and Incadelphys.
FIG. 12 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 12. — Aenigmadelphys archeri, SEM photos of casts: A, left M3 (holotype, OMNH 23328) in occlusal view; B, right m3 (OMNH 20531)in occlusal view; C, the same in labial view; D, the same in lingual view. Scale bar: 1 mm.
FIG. 11 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 11. — Occlusal view of the M1 of some basal metatherians discussed in text showing the distolabial extension of the metastylar lobe: A, Aenigmadelphys (OMNH 22898), SEM photo of cast; B, Incadelphys (YPFB Pal 6251), SEM photo of cast; C, Incadelphys (MHNC 13906); D, Marmosopsis (MNHN.F.ITB83). Scale bar: 1 mm.
FIG. 10 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 10. — Incadelphys antiquus, MHNC 13906: A, lateral view of the right dentary; B, medial view of the right dentary; C, lateral view of the left dentary; D, medial view of the left dentary; E, ventral view of the left dentary. Scale bar: 5 mm.
FIG. 9 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 9. — Incadelphys antiquus, MHNC 13906: B, right lateral view of the anterior skull. Scale bar: 5 mm.
FIG. 9 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 9. — Incadelphys antiquus, MHNC 13906: A, left lateral view of the anterior skull. Scale bar: 5 mm.
FIG. 8 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 8. — Incadelphys antiquus, MHNC 13906: A, dorsal view of the anterior skull; B, ventral view of the anterior skull. Scale bar: 5 mm.
FIG. 6 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 6. — Incadelphys antiquus, MHNC 13906: A, stereopair of the left lower tooth row in occlusal view; B, stereopair of the right lower tooth row in occlusal view. Scale bar: 5 mm.
FIG. 4 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 4. — Incadelphys antiquus, MHNC 13906: B, stereopair of the left maxilla and upper tooth row in occlusal view. Scale bar: 5 mm.
FIG. 5 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 5. — Incadelphys antiquus, MHNC 13906:A, lateral view of the right upper tooth row; B, lateral view of the left upper tooth row. Scale bar: 5 mm.
FIG. 4 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 4. — Incadelphys antiquus, MHNC 13906: A, stereopair of the right maxilla and upper tooth row in occlusal view. Scale bar: 5 mm.
FIG. 7 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 7. — Incadelphys antiquus, MHNC 13906: A, lateral view of the right lower tooth row; B, medial view of the right lower tooth row; C, lateral view of the left lower tooth row; D, medial view of the left lower tooth row. Scale bar: 5 mm.
FIG. 3 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 3. — Incadelphys antiquus, MHNC 13906, partial skull with dentaries: A, ventral view; B, dorsal view; C, left lateral view; D, right lateral view; E, right dentary in lateral view; F, left dentary in lateral view. Scale bar: 5 mm.
FIG. 2 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 2. — Incadelphys antiquus, holotype, YPFB Pal 6251 (SEM photo of cast): A, left maxillary with P1-P2, dP3, M1-M2; M3, missing the protocone, erupting; B, right maxillary with dP3, M1-M2, M3 erupting; C, right dentary with p3, dp3, m1-m2, m3 missing the trigonid, m4 in crypt. Scale bar: 1 mm.
FIG. 13 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians
FIG. 13. — Phylogenetic relationships of Incadelphys among other metatherians: strict consensus tree of four equally parsimonious trees resulting from the analysis of the data matrix of 287 osteological characters and 32 taxa with equally weighted homoplastic characters (Tree length [L] = 889; Consistency index [CI] = 0.4; Retention index [RI] = 0.606); the Bremer index is given at branches in black numbers below nodes.
Supplementary material for "Oikopleura dioica, the cosmopolitan appendicularian hides multiple cryptic species around the globe"
<p>18S and ITS sequences used to estimate phylogenetic trees for "Oikopleura dioica, the cosmopolitan appendicularian hides multiple cryptic species around the globe." To identify 18S rDNA genes from genome sequences, we searched genome sequences for the best-hit matches to the Rfam models for the eukaryotic small subunit (SSU; RF01960) and large subunit (LSU; RF02543) using cmsearch of the Infernal package (v.1.1.4). The SSU and LSU models from Rfam were downloaded in April 2021. The internal transcribed spacer (ITS) regions were obtained by extracting the region between SSU and LSU.<strong> </strong>Multiple sequence alignments for the 18S and ITS regions were created with MUSCLE (v5) within Seaview (v.3.2).</p>
URL list for downloading training data for 'Maximum Likelihood Phylogeny Reconstruction'' (Galaxy Training Material)
<p>This data is used for Galaxy Training Network (GTN) training 'Maximum Likelihood Phylogeny Reconstruction'. It is a list of Zenodo URL pointers to a dataset of 173 amino acid alignments of orthologs found in chromosome 5 of four strains of S. cerevisiae. Original sequence data (https://zenodo.org/record/6610704) was processed in Galaxy following GTN 'Preparing genomic data for phylogeny reconstruction' training (10.48546/workflowhub.workflow.359.1) to generate alignments of orthologs.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.