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Data from: Landscape context and farm uptake limit effects of bird conservation in the Swedish Volunteer & Farmer Alliance

1. In Europe, agri-environmental schemes (AES) have been unsuccessful in halting biodiversity declines to any great extent. Two particular shortcomings of AES include the low farm uptake and the modest efficacy of many AES options. Partly in response to these shortcomings, initiatives encouraging farmers to take an active role in biodiversity conservation have gained in popularity. However, almost no evaluations of such initiatives exist. 2. We evaluated uptake of conservation advice on farms in the Swedish Volunteer & Farmer Alliance, a BirdLife Sweden-coordinated project aimed at farmland bird conservation, and the response of farmland birds to those actions using farm-level survey data, in a before-after implementation assessment. 3. Uptake was higher for unsubsidised (i.e. non-AES) measures than for AES options, and depended on farmers' interest in nature, farm size (higher uptake on larger farms) and production type (higher on organic farms). 4. In general, abundances of non-crop nesting and field-nesting bird species declined between inventory years (median interval 3 years). Decreases were more marked in agriculturally marginal regions than in more arable-dominated regions, and declines were stronger on organic than conventional farms. 5. Negative abundance trends among non-crop nesting species were reduced by an increasing number of conservation measures at the farm, but only in the more arable-dominated landscapes. Changes in other non-crop species and in field-nesting species did not significantly relate to implemented measures, but the power to detect such effects was generally small due to the small sample size of high-uptake farms as well as high inter-farm variability. 6. Implications: Our results suggest that Volunteer Farmer Alliances and the addition of unsubsidised measures may be successful in changing the local number of non-crop nesting farmland birds at the farm level, and especially so in intensively managed agricultural landscapes. Thus, unsubsidised measures can be a useful addition to the set of agri-environment tools, although their effects on breeding bird numbers are (as with AES) dependent on landscape context, as well as on ensuring high on-farm uptake of different interventions.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Carnivoran resource and habitat use in the context of a Late Miocene faunal turnover episode

We investigate resource and habitat use by apex predators through stable isotope analysis at two Spanish Late Miocene localities: Los Valles de Fuentidueña (~9.6 Ma, LVF) and Cerro de los Batallones (~9.1 Ma, BAT). The temporal window represented by LVF and BAT was crucial in the shaping of the current Iberian mammalian structure because it corresponds to the initial stages of a faunal turnover episode and regional environmental change at ~9.5–8.5 Ma (Vallesian–Turolian transition), associated with an increase in the seasonality of precipitation. Herbivore and carnivore δ13C and δ18O values do not point to significant changes in either the vegetation cover (a woodland to mesic C3 grassland) or the hydrological regime during the time lapse represented between LVF and BAT. This suggests that the environmental shift recorded around the Vallesian–Turolian boundary may have occurred later in time, since LVF and BAT ages are synchronic with the onset of the turnover event. From the standpoint of predator–prey evaluation by means of stable isotope analysis, statistical post hoc tests, mixing model output, and the assessment of niche occupation by LVF and BAT carnivores point to high levels of interspecific competition among large active carnivores, albeit some genera, such as the amphicyonid Magericyon and specially the hyaenid Lycyaena, seemed to avoid competition by taking prey from a more open habitat. Despite the drop in diversity and change in faunal components observed between the LVF and BAT assemblages, a high degree of resource and habitat competition is evident from stable isotope data.

opencc-zeroDec 2016View details →
dryad32/100

Data from: Context-dependence of maternal effects: testing assumptions of optimal egg size, differential- and sex-allocation models

If offspring develop in adverse conditions, the maternal component of their phenotypic variation might increase due to the stronger dependence of offspring traits on parental investment. This should result in increased parental investment to individual offspring, as assumed by the model of optimal egg size. The opposite pattern, i.e., stronger dependence of offspring fitness on parental investment and consequently larger parental investment under good conditions is assumed by both the theory of differential allocation if attractive males provide material benefits, and reproductive compensation if they invest less into paternal care. Another influential idea is the Trivers-Willard model, which assumes sex-specific dependence of offspring fitness on parental investment. Here we tested these ideas by examining the effects of egg size on offspring fitness across many postnatal contexts in the Collared Flycatcher Ficedula albicollis. We employed a cross-fostering design that generated variation in egg size within nests and used brood means of fledgling mass as a functional measure of the quality of rearing conditions. Effects of egg size on three offspring traits, including lifetime reproductive success of recruits, were more pronounced in low-quality broods. These results support the assumption of the model of optimal egg size. Based on female preference for males providing material benefits, this pattern could support differential allocation, if attractive males invest less in paternal care, or reproductive compensation, if they invest more. By comparison, we did not find any evidence for sex specificity of fitness returns that might explain sex monomorphism of egg size in this species. The challenge for future studies will be the integration of components of parental investment and offspring fitness into their global measures and testing how the former affects the latter across gradients of postnatal conditions.

opencc-zeroDec 2014View details →
dryad32/100

Data from: Predator size divergence depends on community context

Body size is a multi-functional trait related to various fitness components, but the relative importance of different selection pressures are seldom resolved. In Carabus japonicus beetles, of which the larvae exclusively prey on earthworms, adult body size is related to the presence/absence of a larger congener and habitat temperature. In sympatry, C. japonicus consistently exhibits smaller body size which is effective for avoiding interspecific mating, but in allopatry, it shows size variation unrelated to temperature. Here, we show that this predator-size variation is attributed to prey-size variation, associated with high phylogenetic diversity in earthworm communities. In allopatry, the predator size was larger where larger prey occurred. Larger adult size may have been selected because larger females produce larger larvae, which can subdue larger prey. Thus, in the absence of a larger congener, variation in prey body size had a pronounced effect on geographic body size divergence in C. japonicus.

opencc-zeroDec 2017View details →
dryad32/100

Metabolic rate, context-dependent selection, and the competition-colonization trade-off

<p class="abstract_para">Metabolism is linked with the pace‐of‐life, co‐varying with survival, growth, and reproduction. Metabolic rates should therefore be under strong selection and, if heritable, become less variable over time. Yet intraspecific variation in metabolic rates is ubiquitous, even after accounting for body mass and temperature. Theory predicts variable selection maintains trait variation, but field estimates of how selection on metabolism varies are rare. We use a model marine invertebrate to estimate selection on metabolic rates in the wild under different competitive environments. Fitness landscapes varied among environments separated by a few centimeters: interspecific competition selected for higher metabolism, and a faster pace‐of‐life, relative to competition‐free environments. Populations experience a mosaic of competitive regimes; we find metabolism mediates a competition‐colonization trade‐off across these regimes. Although high metabolic phenotypes possess greater competitive ability, in the absence of competitors, low metabolic phenotypes are better colonizers. Spatial heterogeneity and the variable selection on metabolic rates that it generates is likely to maintain variation in metabolic rate, despite strong selection in any single environment.</p>

opencc-zeroMay 2020View details →
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Data from: The metabolic costs of sexual signalling in the chirping katydid Plangia graminea (Serville) (Orthoptera: Tettigoniidae) are context dependent: cumulative costs add up fast

Katydids produce acoustic signals via stridulation which they use to attract conspecific females for mating. However, direct estimates of the metabolic costs of calling to date have produced diverse cost estimates and are limited to only a handful of insect species. In this study, we therefore investigated the metabolic cost of calling in a unstudied sub-Saharan katydid, Plangia graminea. Using wild-caught animals, we measured katydid metabolic rate using standard flow-through respirometry while simultaneously recording the number of calls produced. Overall, the metabolic rate during calling in P. graminea males was 59% higher than the resting metabolic rate (0.443±0.056 vs. 0.279±0.028 CO2 ml g−1 h−1) although highly variable among individuals. While individual call costs were relatively inexpensive (ranging from 0.02–5.4% increase in metabolic rate per call) the individuals with cheaper calls called more often and for longer than those with expensive calls resulting in the former group having significantly greater cumulative costs over a standard amount of time (9.5 h). The metabolic costs of calling are however context dependent since the amount of time spent calling greatly influenced these costs in our trials. A power law function described this relationship between cumulative cost and percentage increase per call (y=130.21x−1.068, R2=0.858); where y=cumulative cost, and x=percentage increase per call. The choice of metric employed for estimating energy costs (i.e. how costs are expressed) also affects the outcome and any interpretation of costs of sexual signalling. For example, the absolute, relative and cumulative metabolic costs of calling yield strongly divergent estimates and any fitness implications depend on the organism's energy budget and the potential trade-offs in allocation of resources that are made as a direct consequence of increased calling effort.

opencc-zeroDec 2016View details →
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Data from: Perceived impact of community kitchens on the food security of Syrian refugees and kitchen workers in Lebanon: Qualitative evidence in a displacement context

Community kitchens (CKs) have been recommended as public health strategies with social and nutritional health benefits for low-income participants and their families in different settings. The benefit of CKs in improving the food security status of participants in the context of conflict and displacement is less conclusive. This study aimed to qualitatively explore the impact of CKs on the food security status of community kitchen workers (CWs) and Syrian refugee (SR) families in Lebanon. An exploratory qualitative descriptive approach was adopted. Focus group discussions were conducted with 15 CWs and 49 SRs, and transcripts were analyzed thematically. Emerging themes included: motivation to join the CKs (CWs only), perception towards CKs, impact of these CKs, and their sustainability (both groups). Motivating factors for CWs included financial, internal and societal drivers, and the favorable type of work in kitchens. The perception towards CKs was overall positive among CWs and SR beneficiaries. Both groups reported the positive impact of CKs on their food security and financial status, which in turn affected positively their psychological health. At the social level, CWs indicated that the kitchen's friendly atmosphere increased social cohesion and companionship between Syrians and Lebanese within the kitchen. In addition, CWs reported increased sense of empathy towards SRs benefiting from the CK services. According to study participants, the positive impact of the CKs was almost completely reversed when their operation and services were interrupted for two months. Both CWs and SRs identified facilitators and barriers that can affect the sustainability of the kitchens, including financial and entrepreneurial skills. In conclusion, findings from this study highlight that CKs can be promising programs to improve the food security and livelihoods of participants, while also increasing social cohesion and integration of refugees within host communities in protracted crisis contexts.

opencc-zeroDec 2018View details →
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Data from: Experimental manipulation of avian social structure reveals segregation is carried over across contexts

Our current understanding of animal social networks is largely based on observations or experiments that do not directly manipulate associations between individuals. Consequently, evidence relating to the causal processes underlying such networks is limited. By imposing specified rules controlling individual access to feeding stations, we directly manipulated the foraging social network of a wild bird community, thus demonstrating how external factors can shape social structure. We show that experimentally imposed constraints were carried over into patterns of association at unrestricted, ephemeral food patches, as well as at nesting sites during breeding territory prospecting. Hence, different social contexts can be causally linked, and constraints at one level may have consequences that extend into other aspects of sociality. Finally, the imposed assortment was lost following the cessation of the experimental manipulation, indicating the potential for previously perturbed social networks of wild animals to recover from segregation driven by external constraints.

opencc-zeroDec 2014View details →
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Data from: Context-dependent induction of allelopathy in plants under competition

Some plants use allelopathy to compete against neighbouring plants, and the ability to induce allelopathic compound production in response to competition is hypothesized to be adaptive, as plants can save costs of metabolite production in the absence of competitors. However, whether plants induce allelopathy has rarely been explored so far. We studied the inducibility of polyacetylenes—putative allelopathic compounds in Solidago altissima—in response to competition. Polyacetylenes were found in natural soil surrounding S. altissima patches within the range of concentration known to inhibit competitor growth. Individual S. altissima plants with higher polyacetylene concentration in roots suppressed the growth of the competitor plants more, suggesting that root polyacetylene levels proximate plants' allelopathic capacity. Competition induced polyacetylenes in a context-dependent manner: Whereas introduced Japanese and Australian populations of S. altissima had higher constitutive concentration of polyacetylenes than the native North American populations, inducibility was observed only in Australian plants, where the population is still at an early stage of invasion. Also, induction became more prominent under nutrient depletion, where enhanced allelopathy may be particularly beneficial for suppressing a competitor's exploitative capacity. Finally, we found weak evidence for a trade-off between constitutive and induced polyacetylenes. The observed patterns suggest that allelopathic plants could respond to competition by inducing allelochemical production, but the benefit of such plasticity may vary across time and space. Shifts in competitor communities in introduced range over time may shape plant's plastic responses to competition, while variation in resource availability may alter competitive environment to influence the degree to which plants induce allelopathy.

opencc-zeroDec 2018View details →
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Data from: Alternative reproductive tactics in context: how demography, ecology, and behavior affect male mating success

Exploitation of sexual signals by predators or parasites increases costs to signalers, creating opportunities for establishment of alternative reproductive tactics (ARTs). In field crickets, males calling may attract acoustically-orienting parasitoid flies. Alternatively, males behaving as satellites forgo calling and attempt to intercept females attracted to callers. We modeled the contribution of calling vs. satellite behavior to male reproductive success in the larger context of variation in ecology (parasitism rate, background mortality), demography (density, sex ratio), and female behavior (phonotaxis, mating choosiness). Male mating success was most influenced by number of females (standardized effect size 0.42), then female choosiness (0.33), background mortality (-0.31), number of males (-0.28), and parasitism rate (-0.21). Smallest effects were phonotaxis (0.10) and satellite behavior (-0.09). Although satellite behavior ameliorated negative effects of parasitism, its comparative effect was slight. ARTs seem most likely to evolve and persist when a single selection pressure on signaling is particularly strong.

opencc-zeroDec 2015View details →
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Data from: Context-dependent effects of yolk androgens on nestling growth and immune function in a multibrooded passerine

Female birds may adjust their offspring phenotype to the specific requirements of the environment by differential allocation of physiologically active substances into yolks, such as androgens. Yolk androgens have been shown to accelerate embryonic development, growth rate and competitive ability of nestlings, but they can also entail immunological costs. The balance between costs and benefits of androgen allocation is expected to depend on nestling environment. We tested this hypothesis in a multibrooded passerine, the spotless starling, Sturnus unicolor. We experimentally manipulated yolk androgen levels using a between-brood design and evaluated its effects on nestling development, survival and immune function. Both in first and replacement broods, the embryonic development period was shorter for androgen-treated chicks than controls, but there were no differences in second broods. In replacement broods, androgen-treated chicks were heavier and larger than those hatched from control eggs, but this effect was not observed in the other breeding attempts. Androgen exposure reduced survival with respect to controls only in second broods. Regarding immune function, we detected nonsignificant trends for androgen treatment to activate two important components of innate and adaptive immunity (IL-6 and Ig-A levels, respectively). Similarly, androgen-treated chicks showed greater lymphocyte proliferation than controls in the first brood and an opposite trend in the second brood. Our results indicate that yolk androgen effects on nestling development and immunity depend on the environmental conditions of each breeding attempt. Variation in maternal androgen allocation to eggs could be explained as the result of context-dependent optimal strategies to maximize offspring fitness.

opencc-zeroDec 2014View details →
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Data from: The relation between oilseed rape and pollination of later flowering plants varies across plant species and landscape contexts

Increasing cultivation of oilseed rape may have consequences for pollinators and wild plant pollination. By providing pollinating insects with pollen and nectar, oilseed rape benefits short-tongued, generalist insect species. Long-tongued bumble bee species, specialized to other flower types, may instead be negatively affected by increased competition from the generalists (e.g. due to nectar-robbing of long-tubed flowers) after oilseed rape has ceased flowering. We expected that the increased abundance of short-tongued pollinators and reduced abundance of long-tongued bumble bees in landscapes with a high proportion of oilseed rape would impact the pollination of later flowering wild plant species. In addition, we expected contrasting effects on plants pollinated by short-tongued pollinators and those pollinated by long-tongued bumble bees. We predicted that semi-natural grasslands, which provide insects with alternative floral resources, would reduce both negative and positive effects on pollination by mitigating competition between pollinators. In 16 semi-natural grasslands, surrounded by agricultural landscapes, with a variation in both the proportion of oilseed rape and the proportion of semi-natural grassland within 1 km, we studied reproductive output in two species of potted plants with different pollination strategies: the woodland strawberry (Fragaria vesca) and red clover (Trifolium pratense). The first species is mainly pollinated by short-tongued pollinators, e.g. hoverflies and solitary bees, and the latter by long-tongued bumble bees. Both species flowered after oilseed rape. Strawberry weight was higher in landscapes with a high proportion of oilseed rape, but only in landscapes with a low proportion of semi-natural grassland. The proportion of developed achenes was also positively related to the proportion of oilseed rape, but only during the latest flowering period. In contrast, red clover seed set was unrelated to the proportion of oilseed rape. Whereas the discrepancy between the two strawberry measurements calls for further research, this study suggests that oilseed rape can affect later flowering plants and that the impact differs among species.

opencc-zeroDec 2016View details →
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Data from: The interface of ecological novelty and behavioral context in the formation of ecological traps

Ecological traps occur when rapid environmental change causes animals to actually prefer inferior habitats. Traps increase the likelihood of species extinction, but our understanding of how evolved behavioral algorithms interface with increasingly novel ecosystems to trigger them remains limited. Both polarized and unpolarized light are increasingly common forms of light pollution known to cause maladaptive behavior for both water-seeking and entirely terrestrial insects by maladaptively triggering innate habitat selection and navigation preferences, respectively. We designed a nocturnal, field-based experiment to investigate how diverse nocturnal insect taxa use and contextualize these cues when they are placed in evolutionarily novel proximity, and so test the hypothesis that cues that originally evolved to guide navigation behavior can enhance or hinder the ability of different nocturnal insects to avoid maladaptive behavior within the context of habitat selection. Unpolarized light created more attractive ecological traps, even for aquatic taxa known to use polarized light as their sole habitat selection cue. We found that these cues could, in aquatic taxa, act both additively and synergistically to increase the attraction of ecological traps. While one family showed evidence of partitioning their response to these 2 forms of light within their respective behavioral contexts (navigation, habitat selection), our results indicate that the novel proximity of cues from separate behavioral contexts can act to enhance the attractiveness of ecological traps within a focal context.

opencc-zeroDec 2016View details →
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Data from: Female Dark-eyed Juncos (Junco hyemalis thurberi) produce male-like song in a territorial context during the early breeding season

Reports of female song, once considered a rarity, have recently increased across a variety of avian taxa. Females of many species can be induced to produce male-like song with exogenous testosterone, but observations of female song in free-living birds remain limited by incomplete sampling of females. Here, we report three independent observations of female dark-eyed juncos (Junco hyemalis) producing male-like song early in the breeding season (i.e. post-territory establishment, pre-nesting) in a recently established non-migratory, urban population. To elicit song, we presented 17 free-living junco pairs with a live, caged female conspecific. Three unique females responded to our trials by diving at the intruding female, chasing their (male) mate, fanning their tail feathers, and singing a trilled song similar in structure to male long-range (broadcast) song. We compared male and female songs quantitatively and found that the two sexes were statistically similar in many spectral and temporal characteristics, but female songs had significantly lower minimum and peak frequencies than males. This result is particularly surprising, as males in this urban population are known to sing at a significantly higher minimum frequency than males in a nearby montane population. Both the seasonal and social context in which these songs were observed suggest a potential function for female song in mate guarding and polygyny prevention, but more data are needed to test this hypothesis. Whether female song is common in all dark-eyed juncos during the early breeding season or if it is restricted to this particular urban and non-migratory population remains an important question for future research.

opencc-zeroDec 2016View details →
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Data from: Trophic sensitivity of invasive predator and native prey interactions: integrating environmental context and climate change

Climate change is predicted to intensify the impacts of invasive species by enhancing their performance relative to their native counterparts. However, few studies have compared the performance of invasive predators and native prey, despite the fact that non-native predators are well known to disrupt native communities. The 'trophic sensitivity hypothesis' suggests that predators are less tolerant of increasing environmental stress than their prey, whereas the 'tolerant invaders hypothesis' suggests that invaders are more tolerant than native species due to selection during the introduction process. It is therefore unclear how invasive predators will respond to increasing climate stressors. We coupled physiological measurements (thermal tolerance, thermal optima, salinity tolerance, predation rate) with environmental time-series data to assess the effects of warming and extreme low salinity events on non-native predators (gastropods) and native prey (oysters) from a coastal ecosystem. In general support of the trophic sensitivity hypothesis, we found that both non-native predators exhibited lower thermal optima relative to native prey, lower salinity tolerance and one predator was less tolerant of warming. However, because warming tolerance was extremely high (i.e. habitat temperature is 7·9–21 °C below thermal tolerance), near-term warming may first increase predator performance (consumption and growth rates), with negative effects on prey. Low salinity will likely produce heterogeneous effects on predator–prey interactions due to varying watershed sizes among estuaries that control the duration of low salinity events. The trophic sensitivity hypothesis may be a useful framework for understanding community responses to extreme climate change, which portends a decoupling of predator–prey interactions. However, we conclude that this hypothesis must be evaluated in environmental context and that coupling physiological metrics with in situ environmental data offers the best predictive power of near-term climate change impacts on invaded communities. Within our study system, warming is likely to intensify the impacts of both invasive predators, which may greatly reduce the abundance of the native oyster, a species of conservation and restoration focus.

opencc-zeroDec 2015View details →
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Data from: Indirect effects of a large mammalian herbivore on small mammal populations: context-dependent variation across habitat types, mammal species and seasons

Multiple consumer species frequently co-occur in the same landscape and, through effects on surrounding environments, can interact in direct and indirect ways. These interactions can vary in occurrence and importance, and focusing on this variation is critical for understanding the dynamics of interactions among consumers. Large mammalian herbivores are important engineers of ecosystems worldwide, have substantial impacts on vegetation and can indirectly affect small-mammal populations. However, the degree to which such indirect effects vary within the same system has received minimal attention. We used a 16-year-old exclosure experiment, stratified across a heterogeneous landscape, to evaluate the importance of context-dependent interactions between tule elk (Cervus canadensis nannodes) and small mammals [deer mice (Peromyscus maniculatus), meadow voles (Microtus californicus) and harvest mice (Reithrodontymys megalotis)] in a coastal grassland in California. Effects of elk on voles varied among habitats and seasons: in open grasslands, elk reduced vole numbers during fall 2013 but not summer 2014; in Lupinus-dominated grasslands, elk reduced vole numbers during summer 2014 but not fall 2013; and in Baccharis-dominated grasslands, elk had no effect on vole numbers in either season. Effects of elk on the two mice species also varied among habitats and seasons, but often in different ways from voles and each other. In fall 2013, elk decreased mice abundances in Lupinus-dominated grasslands, but not in Baccharis-dominated or open grasslands. In summer 2014, elk decreased the abundance of harvest mice consistently across habitat types. In contrast, elk increased deer-mice numbers in open grasslands but not other habitats. Within the same heterogenous study system, the influence of elk on small mammals was strongly context dependent, varying among habitats, mammal species and seasons. We hypothesize that such variability is common in nature, and that failure to consider it may yield inaccurate findings and limit our understanding of interactions among co-occurring consumers.

opencc-zeroDec 2017View details →
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Data from: Context-dependent seed dispersal by a scatter-hoarding corvid

1. Corvids (crows, jays, magpies and nutcrackers) are important dispersers of large-seeded plants. Studies on captive or supplemented birds suggest that they flexibly adjust their scatter-hoarding behaviour to the context of social dynamics and relative seed availability. Because many corvid-dispersed trees show high annual variation in seed production, context-dependent foraging can have strong effects on natural corvid scatter-hoarding behaviour. 2. We investigated how seed availability and social dynamics affected scatter-hoarding in the island scrub jays (Aphelocoma insularis). We quantified rates of scatter-hoarding behaviour and territorial defence of 26 colour-marked birds over a three-year period with variable acorn crops. 3. We tested whether caching parameters were correlated with variation in annual seed production of oaks as predicted by the predator dispersal hypothesis, which states that caching rates and distances should vary with seed abundance in ways that benefit tree fitness. We also tested whether antagonistic interactions with conspecifics would affect scatter-hoarding adversely, as found in experimental studies. 4. Caching behaviour varied with acorn availability. Caching distances correlated positively with annual acorn crop size, increasing by as much as 40% between years. Caching rates declined over time in years with small acorn crops, but increased when crops were large. Acorn foraging and caching rates were also negatively correlated with rates of territorial aggression. Overall foraging rates, however, were not associated with aggression, suggesting that reduced dispersal rates were not simply due to time constraints. 5. Our field results support laboratory findings that caching rates and distances by scatter-hoarding corvids are context-dependent. Furthermore, our results are consistent with predictions of the predator dispersal hypothesis and suggest that large seed crops and social interactions among scatter-hoarders affect dispersal benefits for oaks and other masting tree species.

opencc-zeroDec 2015View details →
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Data from: Local context drives infection of grasses by vector-borne generalist viruses

Host characteristics commonly determine infection risk, but infection can also be mediated by regional- or local-scale variation in the biotic and abiotic environment. Experiments can clarify the relative importance of these factors. We quantified drivers of infection by barley and cereal yellow dwarf viruses (B/CYDV), a group of generalist, vector-borne grass pathogens, at hierarchically nested spatial scales (105–1 m) by planting individuals of six common grass species into five Pacific Coast grassland sites spanning 7° of latitude (&gt; 5000 total hosts) and applying a factorial combination of nitrogen and phosphorus fertilizer. Infection differed most among experimental blocks (102–103 m scale), suggesting that local factors control infection risk; infection increased with cover of long-lived hosts and phosphorus, but not nitrogen, fertilization. For B/CYDV, local context more strongly predicts infection risk than host species traits or regional context; such spatially nested experiments can clarify the factors underlying variation in infection risk.

opencc-zeroDec 2015View details →
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Data from: Context-dependent survival, fecundity, and predicted population-level consequences of brucellosis in African buffalo

1. Chronic infections may have negative impacts on wildlife populations, yet their effects are difficult to detect in the absence of long-term population monitoring. Brucella abortus, the bacteria responsible for bovine brucellosis, causes chronic infections and abortions in wild and domestic ungulates, but its impact on population dynamics is not well understood. 2. We report infection patterns and fitness correlates of bovine brucellosis in African buffalo based on (1) 7 years of cross-sectional disease surveys and (2) a 4-year longitudinal study in Kruger National Park (KNP), South Africa. We then used a matrix population model to translate these observed patterns into predicted population-level effects. 3. Annual brucellosis seroprevalence ranged from 8·7% (95% CI = 1·8–15·6) to 47·6% (95% CI = 35·1–60·1) increased with age until adulthood (&gt;6) and varied by location within KNP. Animals were on average in worse condition after testing positive for brucellosis (F = −5·074, P &lt; 0·0001), and infection was associated with a 2·0 (95% CI = 1·1–3·7) fold increase in mortality (χ2 = 2·039, P = 0·036). Buffalo in low body condition were associated with lower reproductive success (F = 2·683, P = 0·034), but there was no association between brucellosis and pregnancy or being observed with a calf. 4. For the range of body condition scores observed in the population, the model-predicted growth rate was λ = 1·11 (95% CI = 1·02–1·21) in herds without brucellosis and λ = 1·00 (95% CI = 0·85–1·16) when brucellosis seroprevalence was 30%. 5. Our results suggest that brucellosis infection can potentially result in reduced population growth rates, but because these effects varied with demographic and environmental conditions, they may remain unseen without intensive, longitudinal monitoring.

opencc-zeroDec 2014View details →
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Data from: Context-dependent effects of radio transmitter attachment on a small passerine

Biotelemetry devices provide unprecedented insights into the spatial behaviour and ecology of many animals. Quantifying the potential effects of attaching such devices to animals is essential, but certain effects may appear only in specific or particularly stressful contexts. Here we analyse the effects of radio transmitter attachment on great tits Parus major tagged over three environmentally dissimilar years, as part of a project studying social- and communication networks. When we radio-tagged birds before breeding, only those tagged in the coldest spring tended to be less likely to breed than control birds. Breeding probability was independent of relative transmitter weight (between 5 and 8% bodyweight). When we radio-tagged both parents during nestling provisioning (transmitter weight between 6 and 8%), tagged parents were more likely than control parents to desert their brood in two out of three years, while in the other year no tagged parents deserted. Tagged parents provisioning larger broods were most likely to desert, especially during lower average temperatures. Video analyses did not reveal any transmitter effects on provisioning behaviour of parents in the year with no desertion. We conclude that radio tagging before breeding did not lead to negative effects, regardless of transmitter weight, but that decisions about radio-tagging both parents during nestling provisioning need to be made with exceptional care, taking both environmental context and transmitter weight into account. Reporting results from long-term radio-tracking studies comprising several environmentally variable years is crucial to understand and predict potential transmitter effects and maximise the tremendous potential of biotelemetry.

opencc-zeroDec 2015View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record