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Figure 4 in How many metazoan species live in the world's largest mineral exploration region?
Figure 4. Phylum-level composition of CCZ and global benthic metazoan checklists Relative abundance of phyla in the CCZ Checklist— named/known species (Data S1); the CCZ unnamed species list (Data S2); and all global deep-sea metazoan species recorded in WoRDSS (World Register of Deep-Sea Species)44 on 1st January, 2023.
Datasets underlying the paper Zero-mode waveguide nanowells for single-molecule detection in living cells
<p>Different datasets underlying the paper Zero-mode waveguide nanowells for single-molecule detection in living cells. The repository contains .zip archives, mostly containing a readme file with additional information.</p> <pre>Cell imaging experiments.zip contains the raw image files acquired on arrays of version 1 or version 2 using a Nikon TI inverted microscope and used in figures 4-6. </pre> <p>Gla_0127_14.zip contains SEM images of the fabrication of arrays of version 1</p> <p>Gla_29_Pd_1.zip contains SEM images of the fabrication of arrays of version 2</p> <p>SM experiments.zip contains the raw single-molecule fluorescence data acquired on an array of version 1 using a PicoQuant Microtime microscope together with the analysis files.</p> <p>FDTD simulations.zip contains the simulation files for the use in the software Lumerical</p>
Imaging data from "Live-cell 3D single-molecule tracking reveals modulation of enhancer dynamics by NuRD"
<p>3D 20ms, 3D 500ms and 2D dCas9 raw videos, localisation, tracking and trajectory analysis data</p> <p>From 'Live-cell 3D single-molecule tracking reveals modulation of enhancer dynamics by NuRD" (2021). Biorxiv. https://doi.org/10.1101/2020.04.03.003178</p>
Fig. 36. Tolteca Huber, 2000 live specimens. A–B. T in Short-legged daddy-long-leg spiders in North America: the genera Pholcophora and Tolteca (Araneae, Pholcidae)
Fig. 36. Tolteca Huber, 2000 live specimens. A–B. T. hesperia (Gertsch, 1982), male and female with egg-sac from Mexico, Sinaloa, S of Rosario. C–D. T. jalisco (Gertsch, 1982), females with egg-sacs from Mexico, Jalisco, N of La Quemada. E–F. T. manzanillo Huber sp. nov., male and female with egg-sac from Mexico, Colima, E of Manzanillo. G–H. T. sinnombre Huber sp. nov., male and female from Mexico, Colima, S of Coquimatlán. I–J. T. huahua Huber sp. nov., male and female from Mexico, Michoacán, W of Huahua. K–L. T. oaxaca Huber sp. nov., male and female with egg-sac from Mexico, Oaxaca, NW of Tehuantepec.
Fig. 7 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 7. Confocal laser scanning micrographs of Pliciloricus ukupachaensis sp. nov. showing 3D reconstruction of (A) adult ♀ holotype (NHMD 1177413) and Z-stack projections (B–E) of paratypic Higgins larva containing a postlarva with an adult (NHMD 1177414). A. Lateral overview; dorsal is left and ventral is right. B. Caudal view; ventral side is up. C. Dorsal overview. D. Overview focused medially in specimen. E. Ventral overview.
Fig. 11. Confocal laser scanning 3D reconstructions. A in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 11. Confocal laser scanning 3D reconstructions. A. Pliciloricus leocaudatus, ventral view, paratype (NHMD 100760). B. Pliciloricus aff. ukupachaensis collected off Oregon, US west coast, lateral view (NHMD 225904).
Fig. 9 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 9. Scanning electron micrographs showing overviews and details of Higgins larvae of unidentified Pliciloricus sp. from st. 9 (personal reference collection of MVS). A. Lateral overview. B–C. Distal tip of mouth cone with protruded oral styles and teeth; dorsal view (B) and frontal view (C). D. Distal tip of mouth cone with retracted oral styles and teeth, ventral view. E. Introvert, dorsal view. F. Detail showing irregular honeycomb ornamentation on lorica. G. Posterior end of lorica, dorsocaudal view. H. Detail showing toe bases and terminal setae.
Fig. 6 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 6. Scanning electron micrographs showing details of adult paratypic ♀ of Pliciloricus ukupachaensis sp. nov. (NHMD 1177421). A. Mouth cone and basal parts of double organ. B. Double organ with clavoscalids in the background. C. Detail showing the interplical radii on the dorsal side of the lorica. D. Scalids and trichoscalids on the ventral side of the introvert and neck; inset shows close-up of area marked with dashed frame. E. Anal field; dorsal side is up. F. Detail showing flosculus on the anal field.
Fig. 2 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 2. Line art illustrations of Pliciloricus ukupachaensis sp. nov. A. Holotype, ♀ (NHMD 1177413), lateral view; for visibility, some Row 6 to 8 scalids have been omitted and their attachment sites are indicated by circles with dashed lines. B. Higgins larva containing a postlarva with an adult (NHMD 1177414), ventral view. C. Detail of anal field in adult (NHMD 1177421); dorsal side is up.
Fig. 10 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 10. Light micrographs showing overviews of unidentified specimens. A. Pliciloricus sp. Higgins larva from st. 7, lateral view (NHMD 1177415).B. Rugiloricus sp. 1 Higgins larva, ventral view (NHMD 1177416); inset shows close-up of plate-like toe bases with serrated margins. C. Rugiloricus sp. 1 postlarva with developing adult inside, focused medially in specimen (NHMD 1177417). D. Rugiloricus sp. 2 adult, lateral view with dorsal left and ventral right (NHMD 1177420). E. Rugiloricus sp. 2 Higgins larva, dorsal view (NHMD 1177418). F. Same, ventral view.
Fig. 1 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 1. Map showing the three stations near the Atacama Trench where loriciferans were collected. Station numbers refer to Grzelak et al. (2021).
Fig. 8 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 8. Light micrographs showing overviews and details of paratypic Higgins larva of Pliciloricus ukupachaensis sp. nov., containing a postlarva with an adult (NHMD 1177414). A. Overview, focused medially in specimen. B. Ventral overview. C. Prepharyngeal armature, focused on oral teeth. D. Prepharyngeal armature, focused on internal armature. E. Anterior part of lorica, ventral view. F. Posterior part of lorica, dorsal view. G. Posterior part of lorica, focused medially in specimen. H. Posterior part of lorica, ventral view.
Fig. 5 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 5. Scanning electron micrographs showing overviews of adult paratypic ♀ of Pliciloricus ukupachaensis sp. nov. (NHMD 1177421). A. Ventral overview. B. Right side lateral overview. C. Frontal overview. D. Lorica, dorsocaudal view.
Fig. 4 in Living on the edge - first survey of loriciferans along the Atacama Trench
Fig. 4. Light micrographs showing overviews and details of holotype, adult ♀ of Pliciloricus ukupachaensis sp. nov. (NHMD 1177413). A. Lateral overview; dorsal is left and ventral is right. B. Detail of head showing mouth cone, clavoscalids and double organ. C. Detail of introvert showing scalids of Rows 4 to 8, inclusive claw-shaped scalids of Row 4. D. Detail of neck region and anterior part of lorica. E. Posterior part of lorica and lateral half of the anal field.
Growth form and leaf habit drive contrasting effects of Arctic amplification in long-lived woody species
<p><strong>Raw_and_STD_Chronologies.txt</strong> contains the raw (suffix "_raw") and indexed (suffix "_std") ring-width chronology derived from seven species (<em>Juniperus communis</em> L., <em>Betula nana</em> L., <em>Salix lanata</em> L., <em>Picea abies</em> L., <em>Pinus contorta</em> Douglas, <em>Betula pubescens</em> Ehrh., and <em>Sorbus aucuparia</em> L.) collected from ten sites located across Iceland. In the file, each column addresses the chronology belonging to a precise site and species, coded following the one used in the International Tree-Ring Data Bank (ITRDB) as listed in Grissino_Mayer (1993). This data was used to model growth trends and to perform climate-growth associations over the 1967-2018 period.</p>
Data from: "Shift in habitat selection during natal dispersal in a long-lived raptor species"
<p><strong>Abstract</strong></p> <p>Animals select their habitat along environmental gradients, but the mechanisms that constrain the ecological requirements of an individual can differ between life stages. Dispersal is a key demographic process that determines gene flow and alters species distributions, yet few empirical studies have examined whether habitat selection in animals is changing during dispersal. In this study, we examined changes in habitat preferences during natal dispersal of red kites (<em>Milvus milvus</em>), a European raptor species. By deploying solar-powered GPS-GSM transmitters on nestlings, we continuously tracked individuals up to six years (2015-2020), from fledging to settlement. We applied habitat selection functions to the tracking data using hierarchical generalized additive models, a flexible method which combines individual- and population-level inference, while allowing for the contrast of the prospecting and settlement phases. During the prospecting phase (n = 204 birds), individuals were less responsive to their environment than during the settlement phase, resulting in a predicted wide distribution in Western Europe. During the settlement phase, individuals (n = 78 birds) selected a narrower range of environmental gradients, while avoiding areas of high elevation, steep topographic slopes, high human population density and highly heterogeneous landscapes. During this phase, individuals were also more philopatric, i.e., they were more inclined to choose an environment closer to their natal area, than during the prospecting phase. Suitable habitats predicted during settlement were much more spatially contrasted than during prospecting. Our study provides empirical evidence that habitat selection changes across natal dispersal phases in a long-lived species, indicating that species conservation strategies should account for different environmental constraints before and after settlement. Furthermore, our findings underscore the importance of long-term tracking data, with sufficient sample size, to study the link between habitat selection and natal dispersal.</p>
Supplementary Files and Data of 'Live-bearing cockroach genome reveals convergent evolutionary mechanisms linked to viviparity in insects and beyond'
<p> Live birth (viviparity) has arisen repeatedly and independently among animals. We sequenced the genome and transcriptome of the viviparous Pacific beetle-mimic cockroach and performed comparative analyses with two other viviparous insect lineages, tsetse flies and aphids, to unravel the basis underlying the transition to viviparity in insects. We identified pathways undergoing adaptive evolution for insects, involved in uro-genital remodeling, tracheal system, heart development, and nutrient metabolism. Transcriptomic analysis in the cockroach and tsetse viviparity reveals that uterine remodeling and nutrient production are increased and the immune response is altered during pregnancy, facilitating structural and physiological changes to accommodate and nourish the progeny. These patterns of convergent evolution of viviparity among insects, together with similar adaptive mechanisms identified among vertebrates, highlight that the transition to viviparity requires changes in uro-genital remodeling, enhanced tracheal and heart development (corresponding to angiogenesis in vertebrates), nutrient metabolism, and shifted immunity in all animal systems.</p>
Fig. 1. SEM photos showing c.f in Latitudinal Diversity Gradients in Free-living Microorganisms - Hoogenraadia a Key Genus in Testate Amoebae Biogeography
Fig. 1. SEM photos showing c.f. Hoogenraadia humicola found from soils in Shennongjia Mountains of central China (the left picture is from Qin et al. 2011). This was previously identified as Planhoogenraadia africana by Qin et al. (2011). Scale bars: 50 µm (a) and 20 µm (b).
Fig. 3 in Latitudinal Diversity Gradients in Free-living Microorganisms - Hoogenraadia a Key Genus in Testate Amoebae Biogeography
Fig. 3. Relationship between shell width and shell length of each species of the genus Hoogenraadia. The sample sizes on which these measurements are based is unclear as the older literature often doesn't specify the number of tests measured (see Table 1).
Fig. 2 in Latitudinal Diversity Gradients in Free-living Microorganisms - Hoogenraadia a Key Genus in Testate Amoebae Biogeography
Fig. 2. Shell outline and SEM photos of six species of genus Hoogenraadia Gauthier-Lièvre and Thomas 1958, with scale bar 50 μm. a – H. cryptostoma Gauthier-Lièvre and Thomas 1958; b – H. sylvatica Vucetich 1974; c – H. africana Gauthier-Lièvre and Thomas 1958; d – H. humicola Bonnet 1976; e – H. ovata Bonnet 1976; f – H. asiatica Wang and Min 1987.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.