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695 results for “topologies”
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [Hi-C]
GEO Series GSE246661. Homo sapiens. 4 samples. Type: Other.
3D genome topology distinguishes molecular subgroups of medulloblastoma
GEO Series GSE246125. Homo sapiens. 55 samples. Type: Expression profiling by high throughput sequencing; Other.
Topology regulates cell differentiation in situ
GEO Series GSE276240. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome
GEO Series GSE246663. Homo sapiens. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Spatiotemporal remodeling of chromatin topology architecture and H3K27me3 redistribution underlies vascular pathology in Hutchinson-Gilford progeria syndrome [CUT&Tag]
GEO Series GSE312029. Homo sapiens. 84 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Sen1 and Rrm3 ensure permissive topological conditions for replication termination [ChIP-chip]
GEO Series GSE214908. Saccharomyces cerevisiae. 16 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Topological regulation of the estrogen transcriptional response by ZATT-mediated inhibition of TOP2B activity [ICE-Seq]
GEO Series GSE236413. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Single-Cell Analysis of The Transcription Factor Controlled Early T Cell Differentiation Dynamics and Trajectory Topology
GEO Series GSE165835. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatiotemporal remodeling of chromatin topology architecture and H3K27me3 redistribution underlies vascular pathology in Hutchinson-Gilford progeria syndrome [Hi-C]
GEO Series GSE312031. Homo sapiens. 8 samples. Type: Other.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [RNA-Seq_mouse]
GEO Series GSE297129. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomisc Reveals Myometrial Topologically Associated Domains linked to the Onset of Human Term Labor
GEO Series GSE186763. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [RNA-Seq]
GEO Series GSE246286. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
TimeChange: Topology inspired methods for the detection of differential dynamics in time-series data
GEO Series GSE193991. Drosophila melanogaster. 60 samples. Type: Expression profiling by high throughput sequencing.
Sen1 and Rrm3 ensure permissive topological conditions for replication termination
GEO Series GSE214930. Saccharomyces cerevisiae. 64 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Genome binding/occupancy profiling by genome tiling array.
Sen1 and Rrm3 ensure permissive topological conditions for replication termination [ChIP-seq]
GEO Series GSE214925. Saccharomyces cerevisiae. 48 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dataset Package for the Manuscript "Antiferromagnetic skyrmion lattice order with alternating topological charges"
<p>The attached files include data presented in the respective manuscript. In the filenames "FigureXY...", XY is a placeholder and indicates the figure in that the data are presented.</p> <p>In File "Figure2e.dat", the colorcoding is presented terms of three 57 x 22 (rows x colums) matrices. The first matrix (rows 1-57) present the values for the momentum-transfers, the second matrix (rows 58-115) the values for the temperature, and the last matrix (rows 116-171) the respective values for the neutron diffraction intensity.</p> <p>File "Figure3b.dat" presents the colorcoding, also in terms of three matrices, where the first matrix (rows 1-15001) presents values for magnetic field, the second matrix (rows 15002-30002) values for temperature, and the third matrix (30003-45003) values for the topological Hall effect.</p> <p>"Figure3c_M.dat" and "Figure3c_THE.dat", present data of magnetization and topological Hall effect, respectively. The first column in each file contains field-values and the second column the quantity indicated in the filename.</p> <p>The files "Figure4b....dat" present integrated intensities of neutron diffraction data as a function of field. The filename indicates the respective propagation vector star. In each file, the first column corresponds to magnetic field, the second column to integrated intensity, and the third column to the uncertainty derived from Poisson counting statistics.</p> <p>The colorcoding in file "Figure4dColorcoding.dat" is presented analogously to the previous files. "Figure4dMaxima.dat" contains the locations of Maxima drawn into the figure. The structure of the files for figures 4e, 4f, 4g, 5a, 5b, and 5c is analogous to the previous files.</p> <p>For Figures 5d, 5e, and 5f, the files present spin structures obtained from our theory. The first two colums describe the unit cell of the magnetic Cerium ion in conventional coordinates (the third coordinate is omitted). Colums 3-5, colums 6-8, colums 9-11, and colums 12-14 include the direction of the spins in the layers at coordinates z=0.241, z=1-0.241, z=1+0.241, and z=2-0.241 in cartesian coordinates, respectively.</p> <p>The files *.col present integrated intensities of magnetic Bragg reflections. In these files, the first column corresponds to a numeration, columns 2 - 4 correspond to the Miller Indizes of the respective magnetic Bragg peaks in conventional tetragonal coordinates, column 5 corresponds to the integrated intensity, and column 6 to the uncertainty due to statistical errors.</p> <p>Files "ExportHallEffectXpYK.dat" present Hall effect data from the Supplementary Material. The last positions of the filename indicate the temperature, where data were analyzed. Therein, the first column corresponds to magnetic field, the second column to the transverse Hall resistivity and the last column to the sum of normal Hall effect and anomalous Hall effect that is linear in the field-induced magnetization.</p> <p> </p> <p> </p>
VETO: Vessel topology manual annotation dataset
<p>We have labeled the vessel topology on four public-available retinal datasets:</p> <p>INSPIRE [1]<br>VICAVR [2]<br>IOSTAR [3]<br>DRIVE [4]<br>Two experts were asked to manually label the topological information of the retinal vascular structure by using a graph editing software we developed for this task. Expert one and two independently labeled each vessel segment or centerline for all datasets, based on the types of available manual annotations of the vessel structure. Then the consensus between them was released for public use.</p> <p>It is worth noting that the vessel segments or vessel centerlines were used for topology estimation were extracted either by human grader or automatic vessel segmentation method, i.e. the DRIVE and IOSTAR datasets include the manual annotations of retinal vessel for each image, so the topology reconstruction were performed at manual annotated vessel patterns; for VICAVR datasets, the topology estimation were performed at the automatic segmented vessels by using the automated segmentation method [5]; for INSPIRE dataset, the human expert graded the topology at the vessel centerline which were provided by [6].</p> <p>[1] M. Niemeijer, X. Xu, A. Dumitrescu, B. van Ginneken, J. Folk, and M. Abràmoff, “Automated measurement of the arteriolar-to-venular width ratio in digital color fundus photographs,” IEEE Trans. Med.Imaging, vol. 30, no. 11, pp. 1941–1950, 2011.</p> <p>[2] S. G. Vázquez, B. Cancela, N. Barreira, G. C. de Tuero, M. A. Barceló, and M. Saez, “Improving retinal artery and vein classification by means of a minimal path approach,” Mach. Vis. Appl., vol. 24, no. 5, pp. 919– 930, 2013.</p> <p>[3] J. Zhang, B. Dashtbozorg, E. J. Bekkers, J. P. W. Pluim, R. Duits, and B. M. ter Haar Romeny, “Robust retinal vessel segmentation via locally adaptive derivative frames in orientation scores,” IEEE Trans. Med. Imaging, vol. 35, pp. 2631–2644, 2016.</p> <p>[4] J. Staal, M. D. Abràmoff, M. Niemeijer, M. A. Viergever, and B. van Ginneken, “Ridge-based vessel segmentation in color images of the retina,” IEEE Transactions on Medical Imaging, vol. 23, pp. 501–509, 2004.</p> <p>[5] Y. Zhao, L. Rada, K. Chen, , and Y. Zheng, “Automated vessel segmentation using infinite perimeter active contour model with hybrid region information with application to retinal images,” IEEE Trans. Med. Imaging, vol. 34, no. 9, pp. 1797–1807, 2015.</p> <p>[6] R. Estrada, C. Tomasi, S. Schmidler, and S. Farsiu, “Tree topology estimation,” IEEE Trans. Pattern Anal. Mach. Intell., vol. 37, no. 8, pp. 1688–1701, 2015.</p>
Raw Data of "3D Quantum Anomalous Hall Effect in Magnetic Topological Insulator Trilayers of Hundred‐Nanometer Thickness"
<p>Raw data for "3D Quantum Anomalous Hall Effect in Magnetic Topological Insulator Trilayers of Hundred‐Nanometer Thickness"".</p> <p>In addition to the raw data (zip folder), we have also attached 6 Origin files that demonstrate how we processed the dilution fridge data presented in this work.</p>
Asymptotic approximations for Bloch waves and topological mode steering in a planar array of Neumann scatterers
<p>We study the canonical problem of wave scattering by periodic arrays, either of infinite or finite extent, of Neumann scatterers in the plane; the characteristic lengthscale of the scatterers is considered small relative to the lattice period. We utilise the method of matched asymptotic expansions, together with Fourier series representations, to create an efficient and accurate numerical approach for finding the dispersion curves associated with Floquet–Bloch waves through an infinite array of scatterers. The approach lends itself to direct scattering problems for finite arrays and we illustrate the flexibility of these asymptotic representations on topical examples from topological wave physics.</p>
Topological regulation of the estrogen transcriptional response by ZATT-mediated inhibition of TOP2B activity
GEO Series GSE236415. Homo sapiens. 89 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.