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6,861 results for “Animation”
Gene expression profiles of renin producing cells in the adult kidney (captopril treated animals) isolated from Renin-YFP transgenic mice using FACS (GUDMAP Series ID:46).
GEO Series GSE42712. Mus musculus. 3 samples. Type: Expression profiling by array.
Analysis on TME of animals treated with Multilamellar uRNA with or without IFNAR1 mAb and PD-1
GEO Series GSE255666. Mus musculus. 33 samples. Type: Other.
Sequencing of Nothobranchius furzeri liver (strain: MZM-04/10p) from Rotenone treated animals in two age groups
GEO Series GSE103809. Nothobranchius furzeri. 20 samples. Type: Expression profiling by high throughput sequencing.
Adverse Health Effects of Cylindrospermopsin in Laboratory Animal (Mouse) Studies in Multi-day Study using Affymetrix Array
GEO Series GSE83198. Mus musculus. 16 samples. Type: Expression profiling by array.
Pol II pausing is a milestone on the road to complex animals
GEO Series GSE223913. Haloferax mediterranei; Dryas iulia; Nematostella vectensis; Escherichia coli; Mus musculus; Perkinsus marinus; Dictyostelium discoideum; Capsaspora owczarzaki; Creolimax fragrantissima; Daphnia pulex; Strongylocentrotus purpuratus; Sphaeroforma arctica. 46 samples. Type: Other.
Vasopressin (AVP) and the V2R specific agonist dDAVP 7 day infusion into Aquaporin 1 knockout animals
GEO Series GSE5953. Mus musculus. 9 samples. Type: Expression profiling by array.
Sequencing of Nothobranchius furzeri (strain: GRZ) skin from Rotenone treated animals
GEO Series GSE103141. Nothobranchius furzeri. 15 samples. Type: Expression profiling by high throughput sequencing.
An animal study for evaluating the dose-dependent effects of fermented mixed grain enzyme food for adiposity and its metabolic disorders in high-fat-diet induced obese mice
GEO Series GSE157822. Mus musculus. 21 samples. Type: Expression profiling by array.
RNA-seq of mouse tissue samples from animal model：Effects of MMP9 on gene expression.
GEO Series GSE232349. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Expression Patterns of Non-Alcoholic Fatty Liver Disease genes and Efficacy of Green Tea on Hyperlipidemic Animal Model
GEO Series GSE77964. Mus musculus. 24 samples. Type: Expression profiling by array.
miRNA profiling of colitis-associated dysplasia in animals submitted to the AOM/DSS model
GEO Series GSE185504. Mus musculus. 11 samples. Type: Non-coding RNA profiling by array.
Adverse Health Effects of Cylindrospermopsin in Laboratory Animals (mouse) Studies
GEO Series GSE83201. Mus musculus. 124 samples. Type: Expression profiling by array.
Sequencing of Nothobranchius furzeri skin in 39 weeks old animals
GEO Series GSE117819. Nothobranchius furzeri. 3 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Comparative anterior pituitary miRNA and mRNA expression profiles of Bama minipigs and Landrace pigs reveal potential molecular network involved in animal postnatal growth
GEO Series GSE68491. Sus scrofa. 4 samples. Type: Non-coding RNA profiling by array; Expression profiling by high throughput sequencing.
Source-tracking fecal contamination by genomic analysis of Escherichia coli from human and animal hosts
GEO Series GSE21115. Escherichia coli str. K-12 substr. MG1655; Escherichia coli. 24 samples. Type: Genome variation profiling by array.
An Animal Model of Myc-driven medulloblastoma
Medulloblastoma (MB) is the most common malignant brain tumor in children. Patients whose tumors exhibit overexpression or amplification of the MYC oncogene (c-MYC) usually have an extremely poor prognosis, but there are no animal models of this subtype of the disease. Here we show that cerebellar stem cells expressing Myc and mutant Trp53 (p53) generate aggressive tumors following orthotopic transplantation.
Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes
GEO Series GSE281904. Patiria miniata; Strongylocentrotus purpuratus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Nutrigenomics in Animal Feeding: Digital Gene Expression Analysis in Poultry Fed Tenebrio molitor Larvae Meal
GEO Series GSE197444. Gallus gallus. 8 samples. Type: Expression profiling by high throughput sequencing.
Search for studies using animal models of neuropathic pain
<p>We carried out a search of 5 online databases for studies reporting animal models of neuropathic pain reporting a behavioural outcome. This search, carried out in September 2012, identified 33,814 unique publications. Two independent investigators screened these publications for inclusion or exclusion and these publications form the dataset for this study (Excel file: Original dataset). These are now being included in a family of systematic reviews categorised by the pain model used.</p> <p>Five different text-mining approaches will be developed for this neuropathic pain literature search using the results from manual screening to train the machine, where machine-learning software set rules to automatically define each publication as included or excluded without the need for human screening.</p> <p>In this project, we seek to update the neuropathic pain literature search using the original search terms and inclusion criteria defined in the online protocol. This search was updated and identified 11,880 unique publications (Excel file: Updated dataset).</p>
3R information retrieval self-reports by aspiring directors of animal experimentation
<p>This dataset (qualitative data) consists in 215 anonymized pdfs of 3R information retrieval self-reports completed by aspiring directors of animal experimentation before 5 educational sessions on information retrieval (2012 to 2015). Visible confidential data, name, address, institution or industry, lab name, email, phone numbers were suppressed with Adobe Pro XI Redaction tool, as well hidden data, such as metadata with sanitization tool.</p> <p>In 2012, 2013, 2014, 2015, aspiring directors of animal experimentation were assigned a 3R information retrieval homework prior attending a mandatory 3 hours face-to-face information retrieval seminar. Participants had to send back self-reports to course organizer of the training module (Module-2), the one week mandatory course for aspiring directors of animal experimentation located in Switzerland. In 2015, before performing self-report, aspiring directors made an online test about basics of information retrieval, 3Rs, and open access. They should obtain 60% of right answers and forwarded the automatic generated certificate to course organizer. Researchers could answer the questions with their personal knowledge or find them in commented presentations and screen castings available on 3Rupdate.ch plateform.</p> <p>Homework were not designed originally to analyze information retrieval skills. The original goal for the homework was to draw more attention and retention from the researchers during the 3 hours seminar. It was thought that if researchers faced difficulties in searching 3R information, it would generate additional motivation for the course. Therefore, self-reports were not marked; no direct individual feed-back was given to the participants, but the face-to-face session was a kind of homework correction, a way to give tips about 3R information retrieval in order to improve their searches. The second goal was to allow researchers to think about how they selected and handled search tools, instead of relying on closely related peers and personal knowledge to gather information on the research subject, an approach that is well known and natural: with time, researchers rely much more on their own network of peers rather than on online information resources to follow the latest development in their field.</p> <p>The homework topic was related to study model selection. The choice of a study model is crucial from a 3R point of view, but also for later scientific result validity: it is not an easy task for fundamental researchers to follow new animal models available on market. Neither is the one to follow new in vitro alternatives, such as 3D tissue cultures, stem cells, and <em>in vitro</em> screening techniques for fundamental researchers using animal experimentation.</p> <p>The case study was: Which mice, or non-vertebrate, or in vitro models are used to study Huntington disease?</p> <p>Homework structure consisted of a brief theory on 3R information retrieval, suggested search tools to be used, and 3 assignments. The first assignment was to perform a search on the subject, the second one to report best searches, namely keywords and search strings used in two selected tools with corresponding relevant references and generated bibliography. The third assignment invited researchers to comment freely about their tool choices, tool differences, and report self-criticism on search strategy, submitting better formulation of the initial query for a better information retrieval process. </p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.