Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
CTCF HiChIP data in A673 Ewing sarcoma cell lines (siCT & siSA2)
GEO Series GSE156650. Homo sapiens. 16 samples. Type: Other.
HOTTIP reinforces CTCF-defined TAD boundaries by forming R-loops to drive Wnt/b-catenin target gene expression in AML leukemogenesis
GEO Series GSE165049. Mus musculus; Homo sapiens. 51 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Acute depletion of CTCF directly affects MYC regulation through loss of enhancer–promoter looping
GEO Series GSE138862. Homo sapiens. 4 samples. Type: Other.
Senescent cells cluster CTCF on nuclear speckles to sustain their splicing program [APEX-seq]
GEO Series GSE283687. Homo sapiens. 6 samples. Type: Other.
Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF [RNA-Seq]
GEO Series GSE85757. Gallus gallus. 20 samples. Type: Expression profiling by high throughput sequencing.
Rapid depletion of the cohesin subunits and CTCF reveals their role in maintaining high-order genome architecture [pA-DamID]
GEO Series GSE181693. Mus musculus. 116 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Gene expression changes in Ctcf-deleted mouse uterus on gestational day 4 (GD4).
GEO Series GSE299181. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
A chromatin code for alternative splicing involving an association between CTCF and HP1α proteins
GEO Series GSE60094. Homo sapiens. 34 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
SuperSeries Acute depletion of CTCF directly affects MYC regulation through loss of enhancer–promoter looping
GEO Series GSE174528. Homo sapiens. 35 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Transcriptome of U251-APP cells with CTCF-binding sites knockout
GEO Series GSE173328. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on super-enhancers [ChIP-seq]
GEO Series GSE180934. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-mediated cis-regulatory chromatin insulation enforces a central B-cell tolerance checkpoint [RNA-seq_IGK repertoire]
GEO Series GSE313431. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Hexavalent chromium disrupts chromatin organization and accessibility to CTCF sites in promoters of differentially expressed genes [ATAC-seq]
GEO Series GSE104563. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The landscape of global long-range interactions in human erythroid cells mediated by GATA1 and CTCF during differentiation
GEO Series GSE110361. Mus musculus. 4 samples. Type: Other.
Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on super-enhancers [Hi-C]
GEO Series GSE180933. Mus musculus. 4 samples. Type: Other.
Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF [ChIP-Seq]
GEO Series GSE86088. Gallus gallus. 40 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Modulation of CTCF barrier permeability by ZFP661 enhances protocadherin diversity for proper cortical dendritic projection in mammals
GEO Series GSE231869. Mus musculus. 102 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Dissection of a CTCF insulator and its impact on chromosome topology and oncogene expression in gastrointestinal stromal tumor (RNA-Seq)
GEO Series GSE241926. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization by CTCF prevents exTreg differentiation to control autoimmunity peripheral tolerance and immunotherapy outcomes [bulkRNAseq_ATACseq_CUT_Tag]
GEO Series GSE274542. Mus musculus. 41 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Senescent cells cluster CTCF on nuclear speckles to sustain their splicing program
GEO Series GSE284194. Homo sapiens. 33 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.