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15,733 results for “article”
Dataset for article: Perakakis, P., Taylor, M., Martinez-Nieto, E., Revithi, I., Vila, J. (2009). Breathing Frequency Bias in Fractal Analysis of Heart Rate Variability. Biological Psychology, 82(1), pp. 82-88
<p>Dataset for article:</p> <p>Perakakis, P., Taylor, M., Martinez-Nieto, E., Revithi, I., Vila, J. (2009). Breathing Frequency Bias in Fractal Analysis of Heart Rate Variability. Biological Psychology, 82(1), pp. 82-88</p>
dataset for article: Ortega-Roldan, B., Rodriguez-Ruiz, S., Perakakis, P., Fernandez-Santaella, M.C., Vila, J. (2014). The emotional and attentional impact of exposure to one’s own body in bulimia nervosa: A physiological view. PLoS ONE 9(7): e102595
<p>dataset for article: Ortega-Roldan, B., Rodriguez-Ruiz, S., Perakakis, P., Fernandez-Santaella, M.C., Vila, J. (2014). The emotional and attentional impact of exposure to one’s own body in bulimia nervosa: A physiological view. PLoS ONE 9(7): e102595</p>
MEG dataset for the article "MEG signature of social conformity: Evidence from evoked and induced responses"
<p>The data set contains averaged MEG measurements of the event-related fields and 3d reconstructions of individual cortical surfaces. Data analysis was performed with Brainstorm (Tadel et al. 2011), which is documented and freely available for download online under the GNU general public license (http://neuroimage.usc.edu/brainstorm). The data is organized in brainstorm database format and can be imported directly using Brainstorm software. The participant's identities are encoded, individual facial features are blurred and any other personal information is also removed from the data. </p>
Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 13C-1H solid-state NMR and molecular dynamics simulations"
<p>Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r</p> <p>System: 70 wt% C12E5, T=298K</p> <p>Other files available: http://dx.doi.org/10.6084/m9.figshare.861071</p>
Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 13C-1H solid-state NMR and molecular dynamics simulations"
<p>Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r</p> <p>System: 70 wt% C12E5, T=320K</p> <p>Other files available: http://dx.doi.org/10.6084/m9.figshare.861071</p>
Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 13C-1H solid-state NMR and molecular dynamics simulations"
<p>Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r</p> <p>System: 70 wt% C12E5, T=333K</p> <p>Other files available: http://dx.doi.org/10.6084/m9.figshare.861071</p>
Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 13C-1H solid-state NMR and molecular dynamics simulations"
<p>Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r</p> <p>System: 60 wt% C12E5, T=333K</p> <p>Other files available: http://dx.doi.org/10.6084/m9.figshare.861071</p>
Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 13C-1H solid-state NMR and molecular dynamics simulations"
<p>Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r</p> <p>System: 60 wt% C12E5, T=320K</p> <p>Other files available: http://dx.doi.org/10.6084/m9.figshare.861071</p>
Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 13C-1H solid-state NMR and molecular dynamics simulations"
<p>Simulation trajectories for the article "Molecular conformation and bilayer pores in a nonionic surfactant lamellar phase studies with 1H-13C solid-state NMR and molecular dynamics simulations" Langmuir 2014, 30 (2), pp 461–469 http://dx.doi.org/10.1021/la404684r</p> <p>System: 60 wt% C12E5, T=298K</p> <p>Other files available: http://dx.doi.org/10.6084/m9.figshare.861071</p>
Dateset for article: Pupillary responses to infant facial expressions
<p>Pupil data related to study: <strong>Pupillary responses to infant facial expressions </strong></p> <p>Dataset contains "raw" eye-tracking data including timeseries of pupil diameter (.gazedata, SA pupil gazefiles anon.zip). The output of automated pupil analyses are included as Excel files (.xls, SA pupil xls.zip). These have been further restructured for statistical analyses into SPSS data files (.sav, SA pupil spss.zip). </p> <p>Matlab code and SPSS syntax for the analyses have been published and documented in GitHub repository: yrttiahoS/<strong>sa-pupil-analysis</strong></p>
NDVI datasets related with the article "A comparative study of cross-product NDVI dynamics in the Kilimanjaro region - a matter of sensor, degradation calibration, and significance"
<p>AHVRR GIMMS and MODIS NDVI input datasets and main results on seasonal and long-term NDVI dynamics related with the manuscript "A comparative study of cross-product NDVI dynamics in the Kilimanjaro region - a matter of sensor, degradation calibration, and significance" recently published in Remote Sensing 8(2), 159, doi: 10.3390/rs8020159.</p>
Dataset for article: Luque-Casado, A., Perakakis, P., Ciria, L.F., Sanabria, D. (2016). Transient autonomic responses during sustained attention in high and low fit young adults. Sci. Rep. 6, 27556
<p>Dataset for article:</p> <p>Luque-Casado, A., Perakakis, P., Ciria, L.F., Sanabria, D. (2016). Transient autonomic responses during sustained attention in high and low fit young adults. Sci. Rep. 6, 27556</p>
Data for article Pesticide seed dressings can affect the activity of various soil organisms and reduce decomposition rate of plant material, BMC Ecology
<p>Raw data for article "Pesticide seed dressings can affect the activity of various soil organisms and reduce decomposition rate of plant material" published in BMC Ecology</p>
Raw data for SELDI-TOF high range from article: Free serum haemoglobin is associated with brain atrophy in secondary progressive multiple sclerosis
<p>Raw normalised data from SELDI-TOF at high range following Expression Difference Mapping (ProteinChip Data Manager. Bio-Rad). Columns contain sample name, sample group (corresponds to longitudinal measurements for each patients at 1,3,4 and 5), peak number (all peaks detected at high range at each time point), peak intensity and mass/charge ratio.</p>
Data files related to the article "Different meditation practices share the same neuronal correlates: increased gamma brainwave amplitude compared to control in three different meditation traditions
<p>Files description:</p> <p>- EEG datasets: the EEG data preprocessed in EEGLAB format</p> <p>- chanlocs.mat: contains channel characteristics for the study / used<br> to plot topographical maps of the data</p> <p> - 60110Hz_spec_data_imw_medit_combined.mat : contains spectrum data between 60 and 110 Hz for all 4 groups of subjects in combined instructed mind-wandering and meditation condition</p> <p> - 60110Hz_spec_data_medit.mat : contains spectrum data between 60<br> and 110 Hz for all 4 groups of subjects in meditation condition</p> <p> - 711Hz_spec_data_medit: contains spectrum data between 7 and 11 Hz for each group in meditation condition</p> <p>- boxplot_gamma.csv and boxplot_alpha.csv : median spectrum in the gamma and alpha ranged used to generate figure 4 B and 6 B</p> <p>- R_code_boxplot.r : code to generate boxplot using boxplot_gamma or boxplot_alpha.csv files</p>
Non-random network connectivity comes in pairs: Code & generated data to reproduce results and figures of the article
<p>Complete research code and generated data for the article to reproduce the figures and computations referenced.</p> <p>Please visit https://non-random-connectivity-comes-in-pairs.github.io/ for documentation of the code.</p>
Sequence data for the article "Whole transcriptome analysis of thousands of FACS-sorted single cells with the single cell nanoCAGE protocol" - single cells dataset
<p>Sequence data (Illumina MiSeq runs) for the article "Whole transcriptome analysis of thousands of FACS-sorted single cells with the single cell nanoCAGE protocol". dataset of 2300 single cells. File names indicate unique sequencing runs. In the manuscripts, the informations about cell lines are found in the Supplemental Table 1. </p>
Sequence data for the article "Whole transcriptome analysis of thousands of FACS-sorted single cells with the single cell nanoCAGE protocol" - Protocol optimization
<p>Sequence data (Illumina MiSeq runs) for the article "Whole transcriptome analysis of thousands of FACS-sorted single cells with the single cell nanoCAGE protocol". Optimization of the protocol. Files names indicate unique run identifiers. In the manuscript, the link between unique run identifiers, cells and purpose of the experiment is found in the Supplemental Table 1. </p>
Data set to article "Synthetic inversions for density using seismic and gravity data" by Blom, Boehm and Fichtner
<p><strong>Data set to “Synthetic inversions for density using seismic and gravity data” by Nienke Blom, Christian Boehm and Andreas Fichtner</strong></p> <p>This data set relates to our paper <em>“Synthetic inversions for density using seismic and gravity data”</em><em>, </em><em>in which we discuss the imaging of density variations inside the Earth as a separate, independent parameter using seismic waveform tomography and gravity measurements</em>. The research consists of synthetic experiments conducted using a home-written MATLAB wave propagation code. The data set contains the code itself, the input files and output files for each of the experiments described in the manuscript and its supplementary material, all the figures, some extra material (such as a video of Figure 1 in the manuscript) and some scripts.</p> <p>Below I’ll give a description of the contents of this data set and how they are structured, followed by an overview of the experiments conducted for the paper.</p> <p>In this data set, the following things can be found:</p> <ul> <li> <p>There is a directory with all the figures: FIGURES. This contains the figures in *.pdf, *.eps and *.png formats.</p> </li> <li> <p>There is a directory FD2D_ADJOINT_CODE with in it the MATLAB code fd2d-adjoint. If you plan on using our code, it would be awfully kind if you'd make a reference both to the code and to this paper. It was a lot of work to develop the code and the experiments. NOTE: the code supplied here is a snapshot of the code taken in February 2017. A more up-to-date version might be found on github (www.github.com/Phlos/fd2d-adjoint)</p> </li> <li> <p>For each (series of) experiment(s) described in the paper, there is a directory T1, T2, …, Tn. This also holds for the supplementary tests, the folders for which are designated with the suffix .SUPPLEMENTARY.</p> </li> <li> <p>For Figure 1 in the manuscript, there is a directory Fig1.snapshots. In this directory, everything pertaining to the snapshots figure and its corresponding video can be found.</p> </li> <li> <p>There is a separate directory SCRIPTS with a couple of useful scripts that might be used in addition to the ones in the fd2d-adjoint code.</p> </li> </ul> <p><br> In each of the test directories T1...Tn, there are subdirectories for each experiment conducted within that test framework. Each of the subdirectories has a name Systematic.test-[xxx]. Within those Systematic.. directories, the following can be found:</p> <ul> <li> <p>an input file Systematic….input_parameters.m that can be copied to [fd2d-adjoint]/input/input_parameters.m in order to re-run the experiment. As the code has been under development while the tests were run, it may be that some input parameters are missing from the earlier experiments.</p> </li> <li> <p>A mat-file obs.all-vars.mat. If this file is copied to [fd2d-adjoint]/output/Systematic.test… , this saves the recalculation of the ‘obs’ data when the code is run.</p> </li> <li> <p>A mat-file initial_misfits.mat. If this file is copied to [fd2d-adjoint]/output/Systematic.test… , this saves the recomputation of the initial misfits with respect to the obs data when the code is run.</p> </li> <li> <p>A file lbfgs_output_log.txt which monitors the misfit and gradient development across the iterations. If the inversion was restarted a couple of times, all of this remains in the logfile.</p> </li> <li> <p>For each iteration of the inversion iter[xxx], an iter[xxx].all-vars.mat file, which contains most of the matlab output files for this iteration.</p> </li> <li> <p>For each iteration of the inversion iter[xxx], some figures:</p> <ul> <li> <p>a model plot of the current model anomalies with respect to the background model iter[xxx].model-diff.rhovsvp.png.</p> </li> <li> <p>a gravity plot of the gravity vector difference between the current model and the background model iter[xxx].gravity_difference.png.</p> </li> <li> <p>a kernel plot of the total relative kernels (whether seis only or seis+grav) of the current model in rho-mu-lambda parametrisation: iter[xxx].rho-mu-lambda.png.</p> </li> </ul> </li> </ul> <p><br> </p> <p>Now follows a brief description of each of the (series of) tests conducted for the paper. The test numbers are mostly chronological, and so are the Systematic.test… subdirectories.</p> <ul> <li> <p><strong>Figure 1</strong>: shows snapshots of wave propagation past a density anomaly. The full data for this and the full video are given in the Fig1.snapshots. <em>Discussed in: Figure </em><em>1 of the manuscript.</em></p> </li> <li> <p><strong>T1: </strong><strong>reference.</strong> A reference test in which we assess to which density can be recovered as an independent parameter. <em>Discussed in: Figure </em><em>4</em></p> <ul> <li> <p>Reference experiment: Systematic.test-033</p> </li> </ul> </li> <li> <p><strong>T2: </strong><strong>ignored density.</strong> A test in which the effect is explored if density is ignored, i.e. if it is kept fixed to the starting model. <em>Discussed in: Figure </em><em>4</em></p> <ul> <li> <p>Fixing density: Systematic.test-040</p> </li> </ul> </li> <li> <p><strong>T3: </strong><strong>starting model</strong>. A series of test in which is explored to what extent the starting models of P and S seismic velocity influence the recovery of density. In the different sub-tests, different levels of information on P and S velocity are already present. <em>Discussed in: Figure </em><em>6</em></p> <ul> <li> <p>vs, vp 100% correct: Systematic.test-029</p> </li> <li> <p>vs, vp 75% correct: Systematic.test-037</p> </li> <li> <p>vs,vp 50% correct: Systematic.test-036</p> </li> </ul> </li> <li> <p><strong>T4: </strong><strong>fixed velocities</strong>. A series of tests in which is explored to what extent one can “get away with” only updating density, assuming that the models for P and S velocity are already sufficiently accurate. <em>Discussed in: Figure </em><em>7</em></p> <ul> <li> <p>vs,vp fixed at 50% correct: Systematic.test-038</p> </li> <li> <p>vs, vp fixed at 75% correct: Systematic.test-041</p> </li> <li> <p>vs, vp fixed at 100% correct: Systematic.test-039</p> </li> </ul> </li> <li> <p><strong>T5: </strong><strong>gravity</strong>. A set of tests in which the addition of gravity data to the (up until here purely) seismic inversion. Both the full gravity vector and its potential are used as gravity data. <em>Discussed in: Figure </em><em>8</em></p> <ul> <li> <p>seismic + full gravity vector (x,z) data: Systematic.test-045</p> </li> <li> <p>seismic + gravity potential data (‘geoid’): Systematic.test-046</p> </li> </ul> </li> <li> <p><strong>T6: noise</strong>. A series of tests in which the addition of noise to the seismic data is explored. Both correlated and uncorrelated noise are explored. Noise levels vary across frequencies. <em>Discussed in: Figure </em><em>9</em></p> <ul> <li> <p>correlated noise: Systematic.test-050</p> </li> <li> <p>uncorrelated noise: Systematic.test-052</p> </li> </ul> </li> <li> <p><strong>T7: impedance</strong>. A test in which the impedance contrast across anomaly boundaries are set to zero. It is explored to what extent the recovery of density relies on the presence of an impedance contrast. <em>Discussed in: Figure </em><em>10</em></p> <ul> <li> <p>no impedance contrast: Systematic.test-055</p> </li> </ul> </li> <li> <p><strong>T8: parametrisation (</strong><em><strong>supplementary</strong></em><strong>)</strong>. A test in which it is explored to what extent the inversion is affected if an inversion parametrisation using density and the elastic parameters mu and lambda is used, instead of the otherwise used parametrisation density-S velocity-P velocity. <em>Discussed in: </em><em>Supplementary </em><em>Figure </em><em>1,2 @ </em><em>Supplementary_material.pdf</em></p> <ul> <li> <p>inversion parametrisation rho-mu-lambda (reference target model): Systematic.test-032</p> </li> <li> <p>inversion parametrisation rho-mu-lambda with ‘scaling’ target model: Systematic.test-062a</p> </li> </ul> </li> <li> <p><strong>T9: scaling relations</strong>. A set of tests in which it is explored to what extent the recovery of density and seismic velocities is influenced if density is scaled to S velocity using a fixed scaling. <em>Discussed in: Figure </em><em>5</em></p> <ul> <li> <p>target model with density scaled to S velocity in different ways; all parameters free: Systematic.test-063</p> </li> <li> <p>same target model, but now density is scaled to S velocity with a fixed relationship: Systematic.test-067</p> </li> </ul> </li> <li> <p><strong>T10: anomaly strength (</strong><em><strong>supplementary</strong></em><strong>)</strong>. A set of tests in which the effect of the strength of the anomalies on the recovery of density and the other parameters is investigated. <em>Discussed in: </em><em>Supplementary </em><em>Figure </em><em>3-5 @ </em><em>Supplementary_material.pdf</em><em> </em></p> <ul> <li> <p>target model like reference case, but the anomalies 10% of PREM instead of 1%: Systematic.test-065</p> </li> <li> <p>target model like reference case, but the anomalies <em>in the upper mantle only</em> 10% of PREM instead of 1%: Systematic.test-064</p> </li> </ul> </li> </ul> <p><br> </p> <p>If you have any further questions, feel free to contact me.</p> <p>All the best,</p> <p>Nienke Blom, Utrecht University<br> n.a.blom@uu.nl<br> nienke.blom@posteo.net</p> <p> </p>
Data supplementing the article: Schultz, N.M., Lawrence P.J, Lee X., Global satellite data highlights the diurnal asymmetry of the surface temperature response to deforestation. Journal of Geophysical Research - Biogeosciences
<p>These data supplement the article: Schultz, N.M., Lawrence P.J, Lee X. Global satellite data highlights the diurnal asymmetry of the surface temperature response to deforestation, under review at the Journal of Geophysical Research - Biogeosciences.</p> <p>contact: Natalie M. Schultz, natalie.schultz@yale.edu</p> <p>Below are descriptions of the data files included here:</p> <p><br> (1) Global LST data: globalLST_Forest_Open.YYYY.nc [2003-2013]</p> <p>- DayLST1/NightLST1 and DayLST2/NightLST2 are the final (after the DEM correction) LST values for forest, and open land cover classes, respectively.<br> - Count variables show the number of pixels of each land cover class in each 0.5 degree grid<br> - The average elevation of each class is given by the DEM1 and DEM2 vars<br> - The DEM correction is the dLSTdDEM vars</p> <p>(2) Global fluxes data: globalFluxes_Forest_Open.YYYY.nc [2003-2013]<br> - Again, forest class = var1, open class = var2<br> - SWRABS is absorbed solar radiation<br> - LE is the latent heat flux<br> - HP is the heating potential term, as defined in the manuscript<br> - As described for the LST data, class pixel counts and DEM data are included</p> <p>(3) climzones3.nc<br> - The delineation of the three climate zones defined in this paper</p> <p>(4) MERRA inversion data: MERRA_11yr_TS_T10M.mat [2003-2013]<br> - 11 years of daily 1am local data averaged over 8-day intervals for 2003-2013<br> - TS = surface temperature<br> - T10M = 10M air temperature (above d)</p> <p> </p> <p> </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.