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Subject-specific knee models, data, and results for specimen S192803
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High-frequency time series of stage height, stream discharge, and water quality (specific conductivity, dissolved oxygen, pH, temperature, turbidity) for Stroubles Creek in Blacksburg, Virginia, USA 2013-2018
A pressure transducer (CS450, Campbell Scientific Inc., Logan, UT, USA) and a multi-parameter water quality sonde (YSI Series 6:6920 v2, YSI Inc., Yellow Springs, OH, USA) were deployed by the Virginia Tech Biological Systems Engineering (BSE) Stream Research, Education, and Management (StREAM) Lab (vtstreamlab.weebly.com/) from January 2013 to December 2018 to assess stage and water quality, and calculate discharge in Stroubles Creek, Blacksburg, VA (4118326.215 N, 549236.02 W). Stroubles Creek is a 19 km tributary of the New River in Blacksburg, Virginia, USA. Stroubles Creek begins immediately below the Virginia Tech campus and flows north into the Kanawha River in the Valley and Ridge physiographic province. Stroubles Creek was a historic water supply for the town of Blacksburg and remains a highly visible waterway in the town, as it traverses both the downtown area and much of the Virginia Tech campus. In 2002, Stroubles Creek was placed on Virginia’s 303(d) list of impaired water bodies with a benthic impairment by the Virginia Department of Environmental Quality (VADEQ). A total maximum daily load (TMDL) plan was subsequently developed in 2003 for the stream in collaboration with Virginia Tech’s BSE department, the Virginia Department of Environmental Quality, and the Virginia Department of Conservation and Recreation. During 2008-2010, a 2.1 km reach of Stroubles Creek, mostly upstream of the StREAM Lab, was restored by means of cattle exclusion, natural revegetation, bank reshaping, and creating an inset floodplain. The water quality dataset provided here is associated with the upper Stroubles Creek watershed which drains approximately 14.5 km2. Currently, data from the StREAM Lab are used by 8-10 faculty and their graduate students in 7 departments across 5 colleges at Virginia Tech for research and at least 16 classes for field labs and/or assignments.
Depth profiles of water column dissolved methane, density and biomass of zooplankton (specifically, Chaoborus spp.), and measurements of methane extracted from Chaoborus spp. during two sampling campaigns in 2016
Depth profiles of water column dissolved methane (CH4), density and biomass of zooplankton (specifically, Chaoborus spp.), and measurements of methane extracted from Chaoborus spp. were collected from Beaverdam Reservoir, Vinton, VA, USA during two, 24-hr intensive sampling campaigns in fall 2016 (3-4 August and 16-17 September). The sampling campaign was designed to test the hypothesis that Chaoborus spp. can transport CH4 from the hypolimnion to the epilimnion of lakes and reservoirs as they migrate to the surface waters from the benthos at night in search of zooplankton prey, and results of the project are published in Carey et al. 2018. During both sampling events, depth profiles of water column methane and Chaoborus spp. density were collected at noon, dusk, midnight, 2 a.m., dawn, and noon the following day at a 1 m resolution. In addition, during the September sampling event depth profiles were collected 1 hour prior to and after dusk. Methane gas was extracted from live Chaoborus individuals at every depth and time point immediately after collection via gentle centrifugation in distilled water following McGinnis et al. 2017. REFERENCES: Carey, C.C., R.P. McClure, J.P. Doubek, M.E. Lofton, N.K. Ward, and D. Scott. 2018. Chaoborus spp. transport CH4 from the sediments to the surface waters of a eutrophic reservoir, but their contribution to water column CH4 concentrations and diffusive efflux is minor. Environmental Science & Technology. 52:1165-1173. DOI 10.1021/acs.est.7b04384 McGinnis, D. F., Flury, S., Tang, K. W., Grossart, H.-P. 2017. Porewater methane transport within the gas vesicles of diurnally migrating Chaoborus spp.: an energetic advantage. Scientific Reports. 7(44478) DOI 10.1038/srep44478
Caribou-Poker Creeks Research Watershed (CPCRW): 15 min stream temperature and chemistry (nitrate-N, fDOM, specific conductivity, turbidity, dissolved oxygen, PAR) from May-Sept 2017
This dataset contains 15 min stream temperature and chemistry (nitrate-N, fDOM, specific conductivity, turbidity, dissolved oxygen) of streams draining the C2, C3, P6, and C4 subcatchments of the Caribou-Poker Creeks Research Watershed (CPCRW). Photosynthetic active radiation at the stream surface is also provided. Data is given in tidy format: each variable forms 1 column, each 15-min observation forms 1 row, and data is sortable by site and timestamp.
Weekly CTD profile measurements of conductivity, specific conductance, temperature, depth, density, and salinity from Lake Hoare, McMurdo Dry Valleys, Antarctica during the 2012-2013 austral summer
As part of the McMurdo Dry Valleys Long Term Ecological Research (LTER) project, we investigated relationships between wind conditions and barotropic seiches within Lake Hoare, located in Taylor Valley, Antarctica, during the 2012-2013 austral summer. Temporal changes in the water column were measured using a rugged, handheld, CastAway CTD (conductivity-temperature-depth probe, manufactured by SonTek), deployed through the Lake Hoare Limno Hole (note, this is a separate instrument from the SeaBird CTD used as part of the MCM LTER core limnological monitoring program). The CastAway CTD directly measures temperature, electrical conductivity, and pressure at 5 Hz as it free-falls through the water column at a rate of approximately 1 m s-1 on the downward cast and approximately 0.3 m s-1 on the upward cast. The device calculates salinity and density using the International Equation of State for Seawater, called EOS-80. This data package provides 27 profiles of depth, temperature, conductivity, specific conductance, salinity, and density collected between November 25, 2012 and January 21, 2013. In general, three profiles were collected over a ten-minute-period every seven days for 57 days. Five profiles were collected prior to the arrival of spring melt, four profiles were collected during the arrival of spring melt on December 7, 2012, and 18 profiles were collected after the arrival of spring melt continuing into late summer.
PIE LTER year 2012, 5 minute and 15 minute measurements of specific conductance, water temperature in a small headwater stream draining a highly suburban catchment (72% residential), Saw Mill Brook, Burlington, MA.
Year 2012, continuous measurements, every 5 minutes for the first deployment and 15 minutes until the end of the year, were made of conductivity, water temperature in a small headwater stream, Saw Mill Brook, Burlington, MA, draining a highly suburban catchment (72% residential). in the Ipswich River watershed.
PIE LTER year 2013, 15 minute measurements of specific conductance, water temperature in a small headwater stream draining a highly suburban catchment (72% residential), Saw Mill Brook, Burlington, MA.
Year 2013, continuous measurements, every 15 minutes were made of conductivity, water temperature in a small headwater stream, Saw Mill Brook, Burlington, MA, draining a highly suburban catchment (72% residential) in the Ipswich River watershed.
PIE LTER year 2014, 15 minute measurements of specific conductance, water temperature in a small headwater stream draining a highly suburban catchment (72% residential), Saw Mill Brook, Burlington, MA.
Year 2014, continuous measurements, every 15 minutes were made of conductivity, water temperature in a small headwater stream, Saw Mill Brook, Burlington, MA, draining a highly suburban catchment (72% residential) in the Ipswich River watershed.
PIE LTER year 2015, 15 minute measurements of specific conductance, water temperature in a small headwater stream draining a highly suburban catchment (72% residential), Saw Mill Brook, Burlington, MA.
Year 2015, continuous measurements, every 15 minutes were made of conductivity, water temperature in a small headwater stream, Saw Mill Brook, Burlington, MA, draining a highly suburban catchment (72% residential) in the Ipswich River watershed.
Specific monitoring results of ESBL-/AmpC-/carbapenemase-producing bacteria and specific monitoring of carbapenemase-producing bacteria, in the absence of isolates detected complementing the European Union Overview Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2017/2018
<p>This dataset derives from the specific monitoring of E. coli producers of ESBLs/AmpC/carbapenemases, as well as the specific monitoring of carbapenemase-producers (voluntary reporting), in the absence of any isolates detected. This dataset contains only data when Total units positive equals zero '0'.</p>
Supplementary data to Clade-specific biogeographic history and climatic niche shifts of the southern Andean-southern Brazilian disjunction in plants
<p>Georeferenced locality data points used in the climatic analyses. Column "clade" indicate whether the species corresponds to the southern Andean (SA) or to the southern Brazilian (SB) clade. See the book chapter for details.</p> <p>Part of this dataset was built with information downloaded from GBIF (www.GBIF.org) for the following taxa:</p> <p><em>Araucaria</em><br> GBIF.org (06 November 2014) GBIF Occurrence Download https://doi.org/10.15468/dl.2nc359<br> GBIF.org (06 November 2014) GBIF Occurrence Download https://doi.org/10.15468/dl.aym9bi</p> <p><em>Butia</em><br> GBIF.org (30th May 2018) GBIF Occurrence Download https://doi.org/10.15468/dl.k42ama</p> <p><em>Colliguaja</em><br> GBIF.org (28 November 2014) GBIF Occurrence Download https://doi.org/10.15468/dl.nvqo4p<br> GBIF.org (13th January 2016) GBIF Occurrence Download http://doi.org/10.15468/dl.aoovox<br> GBIF.org (15th May 2018) GBIF Occurrence Download https://doi.org/10.15468/dl.mownio</p> <p><em>Griselinia</em><br> GBIF.org (28 November 2014) GBIF Occurrence Download https://doi.org/10.15468/dl.eytdse</p>
Fig. 2 in Silk Spinning Behavior Varies from Species-Specific to Individualistic in Embioptera: Do Environmental Correlates Account for this Diversity?
Fig. 2. Continued.
Figure 4 in Morphology and vocalization support specific status of the Chestnut-headed Chachalacaı Ortalis motmot ruficeps (Waglerı 1830) (Aves; Galliformes; Cracidae)
Figure 4. Distribution of O. motmot (blue and light blue) and of O. ruficeps (orange and red). Circles: measured specimens; triangles: vocalizations; diamonds: skins not measured; squares: photographs.
Figure 1 in Morphology and vocalization support specific status of the Chestnut-headed Chachalacaı Ortalis motmot ruficeps (Waglerı 1830) (Aves; Galliformes; Cracidae)
Figure 1. Photographs of the tail of O. motmot (MZUSP 82332) and O. ruficeps (MZUSP 102858) showing the color differences of the external rectrices (arrows). In O. ruficeps the border of the external rectrices are tinged with olive dark brown while in O. motmot they are reddish brown.
PCNSL - sex-specific analyses
<p>This is the data used in the upcoming publication 'Sex-specific differences in primary CNS lymphoma'.</p> <p>Included are:<br> 1. A spreadsheet with MR imaging and histological data, including patient sex<br> 2. Raw histological images</p> <p>If you are interested in the whole dataset (including clinical data and/or raw MRI images) please feel free to contact me.</p>
Relationship between Epilarynx Tube Shape and the radiated Sound Pressure Level during Phonation is gender specific
<p>There are two types of files:</p> <p>.wav files contain the audio recordings</p> <p>.tif files the mri-data necessary for the study.</p> <p>Please do not use the data without referencing its origin.</p>
Dataset: Partial-volume modeling reveals reduced gray matter in specific thalamic nuclei early in the time course of psychosis and chronic schizophrenia
<p>This repository contains the files needed to reproduce the results presented in the paper "Partial-volume modeling reveals reduced gray matter in specific thalamic nuclei early in the time course of psychosis and chronic schizophrenia" (DOI: 10.1002/hbm.25108) </p> <p>In order to ensure the reproducibility of our study, the individual gray matter concentration/probability images as well as the thalamic nuclei parcellations, in native and MNI spaces, are freely available in this repository. The demographic information table including age, gender and intracranial volume for each subject is also available.</p>
Data set for "Projection-specific activity of layer 2/3 neurons imaged in mouse primary somatosensory barrel cortex during a whisker detection task"
<p>Data set for: Vavladeli A, Daigle T, Zeng H, Crochet S, Petersen CCH (2020) Projection-specific activity of layer 2/3 neurons imaged in mouse primary somatosensory barrel cortex during a whisker detection task. FUNCTION 1: zqaa008. doi: 10.1093/function/zqaa008</p> <p>There are 2 files in this upload:</p> <p>1. The file named "2020_Vavladeli_FUNCTION.pdf" is the Open Access pdf file of the manuscript published in FUNCTION.</p> <p>2. The file named "Vavladeli_data_code.zip" (~2 GB) is a zipped version of a folder named "Vavladeli_data_code" (~2 GB), which contains the data analysed in the study along with the Matlab code used to generate the published figures. When unzipped, the folder contains 8 Matlab '.m' files with analysis code and two '.mat' data files. In order to run the analysis of the data set, you need to execute the '.m' file with the corresponding figure name.</p>
Data from: Intra-specific variation in tree growth responses to neighborhood composition and seasonal drought in a tropical forest
<p>1. Functional traits are expected to provide insights into the abiotic and biotic drivers of plant demography. However, successfully linking traits to plant demographic performance likely requires the consideration of important contextual and individual-level information that is often ignored in trait-based ecology.</p> <p>2. Here, we modeled 8 years of growth from 1,138 individual trees from 36 tropical rain forest species. We compared models of tree growth parameterized using individual-level versus species mean trait data. We also compared models that considered regional climatic, local biotic and whole-plant allocation contexts to those that do not.</p> <p>3. Our analyses show that growth models parameterized using individual-level trait information outperformed those that used species mean trait information and that these models often contradicted one another indicating that the common practice of using species mean trait data requires more scrutiny. Additionally, we found that models including climatic, biotic and allocation contexts outperformed those that did not and provide nuanced insights into the drivers of tree growth in a tropical forest.</p> <p>4. Synthesis. Here, we have shown that the development of models of tree demographic performance upon the basis of traits can be improved through a consideration of individual-level trait variation as well as phenotypic and climatic contexts. We highlight that our ability to understand the drivers of tree population and community structure and dynamics in current and in future climates will be limited if contextual and individual-level data remains understudied.</p>
Data from: Genetic analysis of Boletus edulis suggests that intra-specific competition may reduce local genetic diversity as a woodland ages
<p>Ectomycorrhizal fungi are key players in terrestrial ecosystems yet their mating systems and population dynamics remain poorly understood. We investigated the fine-scale relatedness structure and genetic diversity of Boletus edulis, one of the world's most commercially important wild mushrooms. Microsatellite genotyping of fruiting bodies from 14 different sites around Bielefeld in Germany revealed little in the way of population structure over a geographic scale of several kilometers. However, on a more local scale we found evidence for elevated relatedness as well as inbreeding. We also observed a significant negative association between the genetic diversity of fruit and the age of the trees under which they were sampled. Taken together, our results suggest that as genets mature, they compete and potentially create conditions under which further spores struggle to become established. By implication, even though this species is widely picked, propagules remain common enough to create strong competition when new habitats become available.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.