Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
T cell-intrinsic cGAS-CTCF regulation maintains regulatory T cell development and function [scRNA-Seq]
GEO Series GSE301664. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Rapid depletion of the cohesin subunits and CTCF reveals their role in maintaining high-order genome architecture [DamID and ChIP]
GEO Series GSE183958. Mus musculus. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Remote memory and cortical synaptic plasticity require neuronal CCCTC-binding factor (CTCF), a central organizer of 3D chromatin architecture
GEO Series GSE99230. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
The Myc-Associated Zinc Finger Protein (MAZ) Works Both Independently and Together with CTCF to Control Cohesin Positioning and Genome Organization
GEO Series GSE143937. Homo sapiens. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Hexavalent chromium disrupts chromatin organization and accessibility to CTCF sites in promoters of differentially expressed genes [ChIP-seq]
GEO Series GSE104564. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The landscape of global-long range interactions in mouse and human blood cell lines mediated by Yy1, GATA1, and CTCF during differentiation
GEO Series GSE67955. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
A role of the CTCF binding site at enhancer Ea in Tcra rearrangement
GEO Series GSE145147. Mus musculus. 40 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
3D genome organization by CTCF prevents exTreg differentiation to control autoimmunity peripheral tolerance and immunotherapy outcomes [scRNAseq_scTCRseq]
GEO Series GSE274545. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
CGGBP1-regulated cytosine methylation at CTCF-binding motifs resists stochasticity
GEO Series GSE145300. Homo sapiens. 6 samples. Type: Methylation profiling by high throughput sequencing.
T cell-intrinsic cGAS-CTCF regulation maintains regulatory T cell development and function [CTCF-CR]
GEO Series GSE301662. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multiple long-range cis interactions generate CTCF insulator-dependent viral chromatin domains in quiescent HSV-1 genomes
GEO Series GSE301274. Homo sapiens. 16 samples. Type: Other.
Hexavalent chromium disrupts chromatin organization and accessibility to CTCF sites in promoters of differentially expressed genes
GEO Series GSE104566. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Atypical modes of CTCF binding facilitate tissue-specific and neuronal activity-dependent gene expression states.
GEO Series GSE235972. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Senescent cells cluster CTCF on nuclear speckles to sustain their splicing program [RNA-seq]
GEO Series GSE269856. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
CTCF depletion effect in B cells
GEO Series GSE98507. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Decreased CTCF Expression Directs DNA Hypermethylation Events in Cancer
GEO Series GSE93328. Homo sapiens. 12 samples. Type: Methylation profiling by genome tiling array.
ChIP-seq data in mESCs show ZFP661 suppresses cohesin binding at CTCF barriers
GEO Series GSE231866. Mus musculus. 38 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on super-enhancers [RNA-seq]
GEO Series GSE180935. Mus musculus. 13 samples. Type: Expression profiling by high throughput sequencing.
Gene expression changes in CTCF-knockdown primary human endometrial stromal cells (hESCs) compared to control cells
GEO Series GSE299180. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
CTCF-mediated cis-regulatory chromatin insulation enforces a central B-cell tolerance checkpoint [RNA-seq]
GEO Series GSE313430. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.