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30,948 results for “Profile”
IODP Expedition 385 Laser height profile (section half)
<p>Height profile data were measured on the Section Half Multisensor Logger (SHMSL) by a rangefinding laser and recorded in uncorrected height units in millimeters in CSV files.</p>
Regional climate model simulations (CCLM 15km) of profiles for the MOSAiC period
<p>The ship-based experiment MOSAiC 2019/2020 was carried out during a full year in the Arctic. The data set includes simulation data of profiles and derived data for the MOSAiC period (Oct. 2019-Sept.2020). The regional climate model CCLM was used in a forecast mode (nested in ERA5) for the whole Arctic with 15 km resolution and is run with different configurations of sea ice data. These include the standard sea ice concentration taken from passive microwave data (AMSR2) with around 6 km resolution, and sea ice concentration from Moderate Resolution Imaging Spectroradiometer (MODIS) thermal infrared data and MODIS sea ice lead data with 1 km resolution for the winter period (Nov. 2019-April 2020). Model output is available every 1h. In the vertical, the model extends up to 22 km with 60 vertical levels. On data below 10km are used. In addition to profiles, integrated water vapour and temperature for the lowest 2km were calculated. Values are grid-box averages at the ship position. Geostrophic wind was computed from the pressure gradient of the four surrounding grid points.</p> <p>Reference: Heinemann, G., Schefczyk, L., Willmes, S., Shupe, M., 2022: Evaluation of simulations of near-surface variables using the regional climate model CCLM for the MOSAiC winter period. Elem. Sci. Anth., 10 (1). DOI: 10.1525/elementa.2022.00033.</p> <p><strong>Project: </strong> Modelling the impact of sea-ice leads on the atmospheric boundary layer during MOSAiC (MISLAM)</p> <p><strong>Funding: </strong>Federal Ministry of Education and Research (BMBF), grant 03F0887A</p>
Phylogenetic profile of 100 annotated low complexity proteins against the Uniprot Reference Proteome dataset
<p>Phylogenetic profile of 100 human proteins with characteristic compositional bias, previously recorded by Mier et al (2020) against the Uniprot Reference Proteome, containing a total of 11297 proteomes, excluding viruses. The counts for each protein correspond to homologs found in each proteome. </p> <p>Detailed description of included columns:</p> <p><strong>ref_proteome_identifier</strong>: The<strong> </strong>Uniprot Reference Proteome identifier</p> <p><strong>ncbi_taxid</strong>: The NCBI taxonomy ID</p> <p><strong>species_name</strong>: NCBI common name corresponding to taxonomy ID</p> <p><strong>species_code</strong>: internal species code composed of 9 characters</p> <p><strong>taxonomic domain</strong>: E/B/A for Eukaryota/Bacteria/Archaea classification of proteome</p> <p> </p>
Vertical plant profiles for Dassenbos (NL, 2014-2018, TLS); Wytham Woods (UK, 2022, LEAF) & Northern Australia (2021-2022, LEAF)
<p>This dataset was described and used for the analysis of the following publication:<br> <em>StrucNet: A global network for automated vegetation structure monitoring. Brede, B., Newnham, G., Culvenor, D., Armston, J., Bartholomeus, H., Griebel, A., Hayward, J., Junttila, S., Lau, A., Levick, S., Morrone, R., Origo, N., Pfeifer, M., Verbesselt, J. & Herold, M. Remote Sensing in Ecology and Conservation (accepted)</em></p> <p><strong>Any use of this dataset should cite the paper above </strong>(Creative Commons Attribution 4.0 International Public License).</p> <p>Contact: kim.calders@ugent.be</p> <p> </p> <p>================================================<br> Dataset<br> ================================================</p> <p>1) TLS vertical plant profiles Dassenbos. Five-year dynamics of forest structure for the four sampling locations in Dassenbos. Data were collected using the same measurement protocol and data analysis using https://www.pylidar.org/ as described in Calders et al. (2015) using a zenith range of 35-70 degrees for 184-186 (some scans were discarded for quality purposes) measurement days during the period from February 2014 to November 2018. The data repository contains the vertical plant profiles and plotting code (Fig 1 in paper)</p> <p>2) One-year dynamics of vegetation structure for a tropical savanna site in Northern Australia (Fig 2 in paper) and Wytham Woods (Fig 3 in paper). The data repository contains the vertical plant profiles derived from LEAF data and plotting code.</p>
IODP Expedition 396 Laser height profile (section half)
<p>Height profile data were measured on the Section Half Multisensor Logger (SHMSL) by a rangefinding laser and recorded in uncorrected height units in millimeters in CSV files.</p>
FIG. 25. — Serpula dendrocalami C.L in Fungal Biodiversity Profiles 81-90
FIG. 25. — Serpula dendrocalami C.L. Zhao, sp. nov. (holotype): basidiocarps. Scale bars: A, 5 cm; B, 4 cm.
FIG. 14. — Lactarius flaviaquosus X.H in Fungal Biodiversity Profiles 81-90
FIG. 14. — Lactarius flaviaquosus X.H. Wang, sp. nov. (HKAS 104207, holotype): A, basidiospores; B, pleuromacrocystidia; C, lamella edge; D, pileipellis. Scale bars: A, 5 μm; B, 20 μm; C, D, 25 μm.
FIG. 22 in Fungal Biodiversity Profiles 81-90
FIG. 22. — Maximum parsimony strict consensus tree illustrating the phylogeny of Serpula dendrocalami C.L. Zhao, sp. nov., and related species in Serpula based on ITS sequences. Branches are labeled with parsimony bootstrap values (before slash) higher than 50% and Bayesian posterior probabilities (after slash) equal to and more than 0.95. The ITS dataset included sequences from 22 fungal specimens representing 8 taxa. The dataset had an aligned length of 905 characters in the dataset, of which 441 characters are constant, 163 are variable and parsimony-uninformative, and 301 are parsimony-informative. Maximum parsimony analysis yielded 1 equally parsimonious tree (TL = 795, CI = 0.815, HI = 0.185, RI = 0.897, RC = 0.731). Best model for ITS estimated and applied in the Bayesian analysis: GTR+I+G, lset nst = 6, rates = invgamma; prset statefreqpr = dirichlet (1,1,1,1). Bayesian analysis resulted in the same topology with an average standard deviation of split frequencies = 0.001810. Sampled specimens of the new species, Serpula dendrocalami sp. nov., formed a well-supported monophyletic lineage. The EZNA HP Fungal DNA Kit (Omega Biotechnologies Co., Ltd, Kunming) was used to obtain PCR products from dried specimens, according to the manufacturer's instructions with some modifications. ITS region was amplified with primer pairs ITS5 and ITS4 (White et al. 1990). The PCR procedure for ITS was as follows: initial denaturation at 95 °C for 3 min, followed by 35 cycles at 94 °C for 40 s, 58 °C for 45 s and 72 °C for 1 min, and a final extension of 72 °C for 10 min. The PCR products were purified and directly sequenced at Kunming Tsingke Biological Technology Limited Company. All newly generated sequences were deposited at GenBank (Table 1). Branches are lab eled with parsimony bootstrap values (before slash) higher than 50% and Bayesian posterior probabilities (after slash) equal to and more than 0.95.
FIG. 16 in Fungal Biodiversity Profiles 81-90
FIG. 16. — Russula capillaris Buyck, sp. nov. (holotype), morphology of fresh basidioma: A, detail of pileus and stipe surface; B, section showing stipe interior; C, details of gills. Photos: B. Buyck.
FIG. 13. — Lactarius exilis X.H in Fungal Biodiversity Profiles 81-90
FIG. 13. — Lactarius exilis X.H. Wang, sp. nov. (HKAS 89954, holotype): A, basidiospores; B, cheilomacrocystidia; C, lamella edge; D, pileipellis. Scale bars: A, 5 μm; B, 20 μm; C, D, 25 μm.
FIG. 18 in Fungal Biodiversity Profiles 81-90
FIG. 18. — Russula capillaris Buyck, sp. nov. (holotype), microscopic features of the hymenophore: A, spores; B, basidia and basidiola; C, marginal cells of the gill edge; D, gloeocystidia on gill sides; E, gloeocystidia on gill edge. Cystidial contents are mostly schematic, note also the presence of incrusting material that is easily observed near the base of many pleurogloeocystidia. Scale bar: 10 µm, but only 5 µm for spores. Drawings: B. Buyck.
FIG. 12. — Lactarius collybioides X.H in Fungal Biodiversity Profiles 81-90
FIG. 12. — Lactarius collybioides X.H. Wang, sp. nov. (HKAS 76002, holotype): A, basidiospores; B, pleuromacrocystidia; C, lamella edge; D, pileipellis; E, stipitipellis. Scale bars: A, 5 μm; B, 20 μm; C-E, 25 μm.
FIG. 24 in Fungal Biodiversity Profiles 81-90
FIG. 24. — Maximum parsimony Strict consensus tree illustrating the phylogeny of Serpula dendrocalami C.L. Zhao, sp. nov., and related species in Serpula based on combined ITS+nLSU sequences. Branches are labeled with parsimony bootstrap values (before slash) higher than 50% and Bayesian posterior probabilities (after slash) equal to and more than 0.95. This phylogenetic analysis shows that our new species formed a monophyletic entity with high support, 100% BS, 100% BP and 1.00 BPP, and grouped with S. similis. Sequences from 14 fungal specimens representing 8 species are included. The dataset had an aligned length of 2389 characters, of which 1638 characters are constant, 271 are variable and parsimony-uninformative, and 480 are parsimony-informative. Maximum parsimony analysis yielded 4 equally parsimonious trees (TL = 1144, CI = 0.832, HI = 0.168, RI = 0.891, RC = 0.741). Best model for the ITS+nLSU dataset estimated and applied in the Bayesian analysis: GTR+I+G, lset nst = 6, rates = invgamma; prset statefreqpr = dirichlet (1,1,1,1). Bayesian analysis and ML analysis resulted in a similar topology as MP analysis, with an average standard deviation of split frequencies = 0.001815 (BI). Branches are labeled with parsimony bootstrap values (before slash) higher than 50% and Bayesian posterior probabilities (after slash) equal to and more than 0.95.
FIG. 10 in Fungal Biodiversity Profiles 81-90
FIG. 10. — Basidiocarps: A, Lactarius aurantiobrunneus X.H. Wang, sp. nov. (HKAS 101912,holotype); B, L. exilis X.H. Wang, sp. nov. (HKAS 90043); C, L. collybioides X.H. Wang, sp. nov. (HKAS 76002, holotype); D, L. flaviaquosus X.H. Wang, sp. nov. (HKAS 104207, holotype); E, L. resinosus X.H. Wang, sp. nov. (HKAS 104241).
FIG. 15. — Lactarius resinosus X.H in Fungal Biodiversity Profiles 81-90
FIG. 15. — Lactarius resinosus X.H. Wang, sp. nov. (all from HKAS 75984-holotype, except B from HKAS 104241): A, basidiospores; B, lamella edge; C, cheilomacrocystidia; D, pileipellis. Scale bars: A, 5 μm; B, 20 μm; C, D, 25 μm.
FIG. 21. — Russula clavatohyphata R.P. Bhatt, A in Fungal Biodiversity Profiles 81-90
FIG. 21. — Russula clavatohyphata R.P. Bhatt, A. Ghosh, Buyck & K. Das, sp. nov. (AG 15-756): A, sectioned basidiome; B, basidiospores; C, hyphal extremities at the pileus surface; D, pleurocystidia; E, cheilocystidia; F, basidia. Scale bars: A, 10 mm; B-F, 10 µm.
FIG. 17 in Fungal Biodiversity Profiles 81-90
FIG. 17. — Russula capillaris Buyck, sp. nov. (holotype), microscopic features of pileipellis: A, pileocystidia near the trama-subpellis transition with schematic contents in one and indication of refringent conglomerates in both other cells; B, detail of zebroid incrustations observed on most subpellis and context hyphae; C, hyphal extremities of the pileus surface. Scale bar: 10 µm. Drawings: B. Buyck.
FIG. 9 in Fungal Biodiversity Profiles 81-90
FIG. 9. — Original tree generated by Neighbor-Joining (NJ) phylogenetic analysis, rooted with midpoint. NJ analysis was conducted in MEGA X, using bootstrap method (1000 replicates), p-distance as substitution model, transitions and transversions both included, uniform rates among sites, homogeneous pattern among lineages and pairwise deletion for gaps treatment. The bootstrap proportions higher than 70% are indicated above the nodes. New species are in bold. Sample labels are provided in the order of species name, GenBank accession, and geographical origin. For new species, sample numbers with initials of collectors are provided after GenBank accessions.
FIG. 8 in Fungal Biodiversity Profiles 81-90
FIG. 8. — Line drawings of Laccaria indohimalayana K. Das, I. Bera & Vizzini, sp. nov. (KD 17-20, holotype): A, basidiospores; B, basidia; C, sterile elements on face of the lamellae; D, sterile elements on edge of lamellae; E, hyphal elements in pileipellis. Scale bars: A-E, 10 µm.
FIG. 7. — Laccaria indohimalayana K. Das, I in Fungal Biodiversity Profiles 81-90
FIG. 7. — Laccaria indohimalayana K. Das, I. Bera & Vizzini, sp. nov. (KD 17-20, holotype): A, B, fresh basidiomata in the field and basecamp; C, lamellae; D, E, transverse section through pileipellis; F-H, sterile elements on the face of the lamellae; I, 2- to 4-spored basidia; J, K, sterile elements on the edge of the lamellae; L, transverse section through stipitipellis; M, N, basidiospores under SEM. Scale bars: D-L, 10 µm; M, N, 2 µm.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.