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15,733 results for “article”
Data supplementing the article "Assessing ecological status with diatoms DNA metabarcoding : scaling-up on a WFD monitoring network (Mayotte island, France)" V. Vasselon, F. Rimet, K. Tapolczai, A. Bouchez submitted to Ecological Indicators journal
<p>These data supplement the article"Assessing ecological status with DNA metabarcoding or microscopy? Comparison using benthic diatoms in tropical rivers" V. Vasselon, F. Rimet, K. Tapolczai, A. Bouchez submitted to Ecological Indicators journal.</p> <p>The directory contains the following files:</p> <p><strong>80 PGM sequencing libraries (raw data, fastq files).rar </strong>- contains the 80 fastq files provided by the sequencing platform with demultiplexed DNA reads (raw data prior any bioinformatics treatments).</p> <p><strong>80 fastq files information.xlsx</strong> - contains the information relative to the 80 samples including: the ID used in Mothur analyses (corresponding to the name of the fastq files), the sample name, the sampling site code, the name of the river, the monitoring network to which rivers belong, the year of sampling and the GPS coordinates of sampling sites.</p> <p><strong>OTU (95 percent of similarity) list of 80 Mayotte samples.xlsx</strong> - contains the final OTU list obtained after applying all the bioinformatics treatments (trimming, clustering,...): OTUs created at 95% of similarity, the number of DNA reads per sample was normalized at 5710 reads (the smallest values obtained in one sample). A DNA representative sequence and the taxonomic assignment determined using Mothur (using classify.otu command) are also provided for each OTU.</p>
Data for the article "Performance of SCAN density functional method for a set of ionic liquids"
<p>The repository (https://github.com/vilab-tartu/SCAN) contains the database, geometries and an illustrative ipython notebook supporting the article "Performance of SCAN density functional method for a set of ionic liquids". </p>
Supplementary dataset for journal article "De novo MYC addiction as an adaptive response of cancer cells to CDK4/6 inhibition"
<p>Supplementary material for the journal article "De novo MYC addiction as an adaptive response of cancer cells to CDK4/6 inhibition".<br> 13C Metabolic flux analyses of CDK4/6 knockdown HCT116 cells and control HCT116 cells performed using INCA v1.5 (Young, J. D., 2014, INCA: a computational platform for isotopically non-stationary metabolic flux analysis. Bioinformatics 30, 1333-1335; http://mfa.vueinnovations.com.) running with MATLAB R2012b. The two files were generated by INCA with the estimated flux map distributions, network model, and tracer simulations.</p>
Dataset of the analysis described in the article: EM signal penetration in a planetary soil simulant: Estimated attenuation rates using GPR and TDR in volcanic deposits on Mount Etna
<p>GPR and TDR Data collected at two sites on Mount Etna.</p> <p>See for more details the article</p>
Understanding Software in Research: Examining Nature Articles
<p>The dataset contains a review of 40 <em>Nature </em>articles, consisting of an assessment of all of the research articles from January, February, and March of 2016. The articles were scored and metrics were collected on each individual and distinct mention of software in the articles. The mentions were characterized on how they were cited. Values pertaining to the overall collection of articles were also calculated. </p>
Dataset for Article: "Citizen Science Provides a Reliable and Scalable Tool to Track Disease-Carrying Mosquitoes"
<p>This is the dataset used for the analysis in Citizen Science Provides a Reliable and Scalable Tool to Track Disease-Carrying Mosquitoes, by John R.B. Palmer, Aitana Oltra, Francisco Collantes, Juan Antonio Delgado, Javier Lucientes, Sarah Delacour, Mikel Bengoa, Roger Eritja, and Frederic Bartumeus. </p> <p> </p> <p>Copyright &copy; 2017 John R.B. Palmer, Aitana Oltra, Francisco Collantes, Juan Antonio Delgado, Javier Lucientes, Sarah Delacour, Mikel Bengoa, Roger Eritja, and Frederic Bartumeus.</p> <p><br> Dataset for Article: "Citizen Science Provides a Reliable and Scalable Tool to Track Disease-Carrying Mosquitoes" by John R.B. Palmer, Aitana Oltra, Francisco Collantes, Juan Antonio Delgado, Javier Lucientes, Sarah Delacour, Mikel Bengoa, Roger Eritja, and Frederic Bartumeus is licensed under a Creative Commons Attribution 4.0 International License.</p>
The dataset used in the article "Evidential Deep Learning for Guided Drug-Target Interaction Prediction"
<p>The file consists of two parts, the first part is the feature file used for model training and the second part is the saved model.</p> <p>bond_angle file is the feature file for the drugbank dataset, KIBA file is the feature file for the kiba dataset, davis is the feature file for the davis dataset. case_drugbank is the dungbank feature file for the independent test set and case_len_drug is the feature file for the patent validation dataset in the TKIs feature file.len_vs is the feature file for TKIs virtual screening dataset.</p> <p>In the runs folder, the models saved by random division on the Drugbank, KIBA, and Davis datasets are stored.</p> <p>The <a href="https://zenodo.org/api/records/14056305/draft/files/bert_weights_encoderMedium_10.h5/content" target="_blank" rel="noopener noreferrer">bert_weights_encoderMedium_10.h5</a> is the parameter for the small molecule pre-training model, MG-BERT.</p>
Datasets for the article "Emerging patterns of CO2:O2 dynamics in rivers and their link to ecosystem carbon processing "
<p>Datasets supporting the article "Emerging patterns of CO2:O2 dynamics in rivers and their link to ecosystem carbon processing". The datasets are analized using the acompanying repository in github (https://github.com/rocher-ros/O2_CO2_rivers).</p> <p> </p> <p>Currently the publication is under review, for further information and details on the analysis visit the github repository or the acompannying article. </p>
Supplementary material for the article "The Crystal Cargo Provides a Chronicle of Pre-Caldera Dynamics in Mafic Volcanic Systems: Insights from Colli Albani"
<p>This repository contains the data and supplementary material associated with the manuscript: Ágreda-López M., Musu A., Jorgenson C., Sǎla M., Giordano G., Caricchi L., Stremtan C., Petrelli M. "<strong>The Crystal Cargo Provides a Chronicle of Pre-Caldera Dynamics in Mafic Volcanic Systems: Insights from Colli Albani</strong>".<em> S</em>ubmitted to the Journal<em> Bulletin of Volcanology.</em></p> <div> </div> <p> </p>
Hindi News Article Text Dataset
<p>The Hindi News Article Dataset (HNAD) comprises over a million meticulously curated news articles in the Hindi language, sourced from diverse online platforms. Covering a wide range of topics, including politics, economics, culture, sports, and more, it offers a comprehensive representation of the Hindi news landscape. </p>
Dataset related to article "Neutrophils mediate protection in colitis and carcinogenesis by controlling bacterial invasion and IL-22 production by gdT cells"
<p>This record contains raw data related to article "<strong>Neutrophils mediate protection in colitis and carcinogenesis by controlling bacterial invasion and IL-22 production by gd T cells"</strong></p><p>Abstract</p><p>Neutrophils are the most abundant leukocytes in human blood and play a primary role in resistance against invading microorganisms and in the acute inflammatory response. However, their role in colitis and colitis-associated colorectal cancer is still under debate. Therefore, this study aims to dissect the role of neutrophils in these pathological contexts by using a rigorous genetic approach. Neutrophil-deficient mice (Csf3r-/- mice) were challenged with classic models of colitis and colitis-associated colorectal cancer and the role of neutrophils was assessed by histological, cellular and molecular analyses coupled with adoptive cell transfer and correlative analyses using human datasets. Csf3r-/- mice showed increased susceptibility to colitis and colitis-associated colorectal cancer compared to control Csf3r+/+ mice and adoptive transfer of neutrophils in Csf3r-/- mice reverted the phenotype. In colitis, Csf3r-/- mice showed increased bacterial invasion and reduced number of healing ulcers in the colon, indicating compromised regenerative capacity of epithelial cells. Neutrophils were essential for T cell polarization and IL-22 production. In patients with ulcerative colitis, the expression of CSF3R was positively correlated with IL-22 and IL-23 expression. Moreover, gene signatures associated with epithelial cell development, proliferation and antimicrobial response were enriched in CSF3Rhigh patients. Our data support a model where neutrophils mediate protection against intestinal inflammation and colitis-associated colorectal cancer by controlling the intestinal microbiota and driving the activation of an IL-22-dependent tissue repair pathway.</p><p> </p>
English-language articles related to petrophysics retrieved from the SSCI sub-database of Web of Science core database (Time: 2000.01.01-2022.12.31)
<p>According to the research content of petrophysics, petrophysics can be divided into eight branches: rock electricity, rock acoustics, rock nuclear physics, rock mechanics, rock thermophysics, rock nuclear magnetic resonance spectroscopy(NMR), rock gravimetry (density), and rock magnetism. This dataset presents the scientific literature retrieved by selecting the "Science Citation Index Expanded(SCI-EXPANDED)-- 1982-present" sub-library from the core collection database of Web of Science. </p>
The raw data from the article "KinomeMETA: meta-learning enhanced kinome-wide polypharmacology profiling"
<p>The raw data from the article "KinomeMETA: meta-learning enhanced kinome-wide polypharmacology profiling"</p>
Raw data for the article "Photocatalyzed [2sigma + 2sigma] and [2sigma + 2pi] cycloadditions for the synthesis of bicyclo[3.1.1]heptanes and 5- or 6-membered carbocycles"
<p>Raw NMR, IR and MS data for the article "Photocatalyzed [2sigma + 2sigma] and [2sigma + 2pi] cycloadditions for the synthesis of bicyclo[3.1.1]heptanes and 5- or 6-membered carbocycles" published in the Journal of the American Chemical Society, DOI: </p><p><a href="https://doi.org/10.1021/jacs.3c09789">https://doi.org/10.1021/jacs.3c09789 </a></p><p>The number of the folders either correspond to compounds numbers in the article or the name of the folder is self-describing. All details concerning conditions and equipment for measurements can be found in the supporting information of the article. For convenience, the word file version of the supporting information can be found on the top of the raw data folder.</p>
Llistat detallat d'articles de moda extrets segons marca, categoria i gender del catàleg de l'empresa de comerç electrònic "Asos"
<p>El dataset presentat (productes.csv) és un llistat detallat d'articles de moda extrets segons marca, categoria i <i>gender</i> del catàleg de l'empresa de comerç electrònic "Asos". Conté les següents columnes:</p><ul><li>Nom del producte</li><li>Categoria</li><li>Gender</li><li>Preu</li><li>Color</li><li>Url</li><li>Qualificació</li><li>Marca</li></ul><p>Alhora d'executar el codi, hi ha tres paràmetres:</p><ul><li>Marca: qualsevol marca real</li><li>Gender: masculi, femeni, unisex</li><li>Categoria: Accessories, Footwear, Outerwear (opcional)</li></ul><p>En aquest csv, no s'ha especificat la categoria, i per tant, s'han seleccionat totes (Accessories, Footwear, Outerwear). És per això, que els valors de l'atribut "Categoria" són "No Categoria". </p>
Companion documents of the article entitled "State of the art of research towards sustainable power electronics" from the workgroup CEPPS, research group SEEDS, CNRS, France.
<p>These documents accompany the article "State of the art of research towards sustainable power electronics", produced by members of the CEPPS working group, part of the SEEDS research group. These documents include: a list of keywords for bibliographic queries; a list of articles extracted; a list of journals, conferences and key players in the field; and a review of indicators.</p>
Dataset for Article: Potential of dynamic wind farm control by axial induction in the case of wind gusts
<p>This is the dataset for the article "Potential of dynamic wind farm control by axial induction in the case of wind gusts". We provide the data as OUT-files from FAST.Farm simulation. Submission of revised manuscript: November 2023.</p>
Raw Data and Codes for the Article "Ultrafast and persistent photoinduced phase transition at room temperature monitored by streaming powder diffraction"
<p>Dataset for the article "Ultrafast and persistent photoinduced phase transition at room temperature monitored by streaming powder diffraction", containing:</p><ul><li>The data and the codes used to generate the figures</li><li>The raw data used for the study, and the codes to analyze it, from raw diffraction images to refinement parameters</li></ul>
Raw data for the article "Synthesis of Fluorescent Cyclic Peptides via Gold(I)-Catalyzed Macrocyclization"
<p>Raw NMR, IR, MS fluorescence and imaging data for the article "Synthesis of Fluorescent Cyclic Peptides via Gold(I)-Catalyzed Macrocyclization" published in the Journal of the American Chemical Society, DOI: </p><p><a href="https://doi.org/10.1021/jacs.3c09261">https://doi.org/10.1021/jacs.3c09261</a></p><p>The number of the folders either correspond to compounds numbers in the article or the name of the folder is self-describing. All details concerning conditions and equipment for measurements can be found in the supporting information of the article. For convenience, the word file version of the supporting information can be found on the top of the raw data folder.</p>
Data file for Massé et al.'s article, "Unraveling the Life History of Past Populations through Hypercementosis: Insights into Cementum Apposition Patterns and Possible Etiologies using Micro-CT and Confocal Microscopy".
<p>This repository provides a supporting data file for the following research article:</p> <p>Massé L., d’Incau E., Souron A., Vanderesse N., Santos F., Maureille B., Le Cabec A. (2024) Unraveling the Life History of Past Populations through Hypercementosis: Insights into Cementum Apposition Patterns and Possible Etiologies Using Micro-CT and Confocal Microscopy. <em>Biology</em>, 13, 43. doi: <span><a href="https://doi.org/10.3390/biology13010043" target="_blank" rel="nofollow noopener noreferrer">10.3390/biology13010043</a></span></p> <p>For the detailed statistical analyses performed using this dataset, see Supporting Information 1 of the article.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.