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1,048 results for “interpreting”
An Interpretable 3D Multi-Hierarchical Molecular Hybrid Representation for Environmental, Health, and Safety Properties Prediction
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PhagoStat a scalable and interpretable end to end framework for efficient quantification of cell phagocytosis in neurodegenerative disease studies
<p>This study presents a comprehensive dataset that captures the phagocytosis process in wild-type and FTD microglial cells, with each acquisition comprising 20 distinct scenes and seven hours of time-lapse video microscopy. The dataset has undergone rigorous validation and data quality correction techniques, ensuring its reliability for further analysis. The dataset includes 36,496 normalized cell and aggregate images, 1,306,131 individual instance masks for cells, 1,553,036 for aggregates, and 36,496 registered aggregates, all generated using the PhagoStat algorithm. The dataset also provides extensive biological features such as area, position, and speed, presented frame-by-frame for in-depth analysis. To enhance its value, 226 manually annotated images containing 6,430 individual cell masks were incorporated, covering different conditions and scenes. In total, the dataset comprises 235,288 files (94GB), offering researchers a valuable resource for investigating various cellular and aggregate properties.</p> <p>By providing this comprehensive dataset, the study aims to facilitate the development and application of novel methodologies in bioinformatics, computational modeling, and cellular biology. This initiative promotes innovation and collaboration among researchers in these interconnected disciplines, ultimately contributing to the understanding of cellular dynamics and the development of novel therapeutic strategies for neurodegenerative diseases like FTD.</p> <p>For more infomration please check:</p> <p>GitHub: <a href="https://github.com/ounissimehdi/PhagoStat">https://github.com/ounissimehdi/PhagoStat</a></p> <p>Paper: <a href="https://www.nature.com/articles/s41598-024-56081-7">https://www.nature.com/articles/s41598-024-56081-7</a></p> <p>DOI: 10.1038/s41598-024-56081-7</p>
Accurate Spatial Heterogeneity Dissection and Gene Regulation Interpretation for Spatial Transcriptomics using Dual Graph Contrastive Learning
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Driving factors of HONO and their synergy in Hohhot, a semi-arid city in northern China: Insights from interpretable machine learning approaches
<p>Research data includes air pollutants observation data and meteorological parameters data.</p>
FIG. 2 in Review of Paradiscocyrtus Mello-Leitão, 1927 (Gonyleptidae, Opiliones), with the transfer of Paradiscocyrtus cerayanus Roewer, 1929 to Discocyrtus Holmberg, 1878 and a new interpretation of its type locality
FIG. 2. — The most frequent tree (k-values = 5, 6, 10, 15 and 20; 311 steps, consistency index = 52, retention index = 72) obtained by the protocol applied. Clade support values are indicated above the branches (absolute Bremer support values/absolute symmetric frequencies). Clade stability is indicated below the branches by the sensitivity plots ('Navajo rugs'), which indicate different concavity values (k) tested (black squares indicate monophyly; white squares indicate non-monophyly). Main groups have colored branches: Pachylinae s. str. (magenta), Roeweriinae (green), Neopachylinae (red), Mitobatinae (blue) and Discocyrtus s. str. (orange). The unmarked groups are not members of either DRMN or Pachylinae s. str. Shaded taxa names (in grey) evidence the representants of Paradiscocyrtus Mello-Leitão, 1927 status quo 2020.
Text-fig. 4. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Transverse (a) and longitudinal (b) sections of flower showing the ovary wall (ow) and numerous ovules (ov) borne on the mushroom-shaped central globose placenta (pl, blue); placenta shown as a voltex rendering added to orthoslices; note the large openings in the floral tissue (asterisks) interpreted as schizogenous secretory cavities. c, d: Longitudinal (c) and transverse (d) sections of flower (c, volume rendering cut between orthoslice yz0970-1005; d, volume rendering cut between orthoslice xy0780-0820) showing semiinferior ovary (ow, ovary wall) with sepals inserted at the rim of the hypanthium, central column (cc) with mushroom-shaped globose placenta (pl) bearing numerous ovules (ov). Specimens, Mira 100-S153146 (a, b), Mira 100-S170155 (c, d, holotype). Scale bars = 600 µm (a–d). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 4. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Transverse (a) and longitudinal (b) sections of flower showing the ovary wall (ow) and numerous ovules (ov) borne on the mushroom-shaped central globose placenta (pl, blue); placenta shown as a voltex rendering added to orthoslices; note the large openings in the floral tissue (asterisks) interpreted as schizogenous secretory cavities. c, d: Longitudinal (c) and transverse (d) sections of flower (c, volume rendering cut between orthoslice yz0970-1005; d, volume rendering cut between orthoslice xy0780-0820) showing semiinferior ovary (ow, ovary wall) with sepals inserted at the rim of the hypanthium, central column (cc) with mushroom-shaped globose placenta (pl) bearing numerous ovules (ov). Specimens, Mira 100-S153146 (a, b), Mira 100-S170155 (c, d, holotype). Scale bars = 600 µm (a–d).
Text-fig. 8. Mhengere Hill fossiliferous localities (1–3). Silicified tree trunks and fragments of wood are abundant in the poorly indurated basal deposits (marly sand and conglomerate) as well as in the silicified lime-rich sandstones that form the hill, which is interpreted to be the remains of a palaeopan. Image modified from Google Earth. in Stratigraphy, Chronology And Palaeontology Of The Tertiary Rocks Of The Cheringoma Plateau, Mozambique
Text-fig. 8. Mhengere Hill fossiliferous localities (1–3). Silicified tree trunks and fragments of wood are abundant in the poorly indurated basal deposits (marly sand and conglomerate) as well as in the silicified lime-rich sandstones that form the hill, which is interpreted to be the remains of a palaeopan. Image modified from Google Earth.
Dataset for Using deep learning interpretability to study the development of drawing behaviour in children
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ORAL HISTORY, FIGURATION AND INTERPRETATION OF THE RUBBER TANKER: AN ANALYSIS OF THE SYMBOLIC REPRESENTATION PRESENT IN THE RUBBER SQUARE SQUARE, IN PORTO VELHO.
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LITERAL INTERPRETATION OF THE ISSUES OF HUMAN AND SOCIETY IN THE WORK "DEVILDOM"
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Shattered Selves: Interpreting Mental Health through Shakespearean Lens
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INTERPRETATION OF MOTIFS AND IMAGES CHARACTERISTIC OF FOLKLORE IN THE STORY
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THE POETIC INTERPRETATION OF SUFISM'S MAKOMS IN "NAZM UL-JAVOHIR"
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PRAGMATICS: FOCUS ON THE STUDY OF HOW CONTEXT INFLUENCES THE INTERPRETATION OF MEANING IN ENGLISH
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FIGURE 4 in Pleistocene record of mammals and pollen from Mexico (Las Tazas, Valsequillo, Puebla) and their paleoenvironmental interpretation
FIGURE 4. Fossil material of bison from Las Tazas, Valsequillo, Puebla. Bison: A–B, cranium fragment (BUAPAL 755); C, molar M2 (BUAPAL 781); D, right mandible (BUAPAL 756); E, right scapula (BUAPAL 761); F, right ulna (BUAPAL 754); G, left metacarpus (BUAPAL 764); H–K, right astragalus (BUAPAL 763); L, cervical vertebra (BUA- PAL 762); M–N, lumbar vertebra (BUAPAL 758); O–P, lumbar vertebrae (BUAPAL 759). Figures A in occipital view; C in occlusal view; I, L, N, and P in anterior view; B, E, and G in dorsal view; D, F, and K in lateral view; J in medial view; H, M, and O in posterior view.
Figure 15 in Albian to Turonian agglutinated foraminiferal assemblages of the Lower Saxony Cretaceous sub-basins - implications for sequence stratigraphy and paleoenvironmental interpretation
Figure 15. Albian, Cenomanian, and Turonian micro-bioevents, their subtypes defined by agglutinated foraminifers, and interpreted bottomwater nutrient regimes in the Lower Saxony Cretaceous as well as in the Subhercynian subbasins. Micro-bioevent subtypes correlate with one or more acmes of specific agglutinated foraminiferal species. Depositional sequences and their stratigraphical relations are from Janetschke et al. (2015: Fig. 6).
Fig. 1 in Observations on flower and fruit anatomy in dioecious species of Cordia (Cordiaceae, Boraginales) with evolutionary interpretations
Fig. 1 Flower and perianth of C. cf. grandicalyx %blue frames) and C. sinensis %pink frames; A–C, L–N: field images; D–K: stack shot images). A, B Inflorescence in bud. C inflorescence at anthesis. D Anthetic flower. E Opening calyx. F Calyx, longitudinally opened. G Bud, calyx partly removed to show the corolla still closed. H Postanthetic corolla, androecium %both turning brown) and gynoecium. J Postanthetic corolla with disrupting corolla tube. K Opened corolla tube with stamen insertion and anthers showing red lines and spots %exemplarily indicated by an arrow). L Shrubby habitus. M, N Inflorescence %abbreviations: a, anther; b, bud; c, calyx; co, corolla; f, filament; fl, flower; g, gynoecium; t, trichomes)
Material length scale of strain gradient plasticity: A physical interpretation
<p>These data are related to our paper "Dabiao Liu*, and D. J. Dunstan. Material Length Scale of Strain Gradient Plasticity: A Physical Interpretation. International Journal of Plasticity, 98 (2017), 156-47." In this work,the length scales in strain gradient plasticity theories in which the plastic work density can be expressed as a function of the gradient-enhanced plastic strain are here derived from known physical quantities via critical thickness theory. A connection between the length scale and the fundamental physical quantities is elucidated. The combination of the strain and strain-gradient terms within the deformation theory of strain gradient plasticity is addressed. It is shown that, compared with the harmonic sum of the strain and strain-gradient terms in Fleck-Hutchinson theory, the linear combination gives a more reasonable value of length scale, several micrometers, which is close to that in the gradient theory of Aifantis. In contrast, the value of length scale in Nix-Gao theory is much larger, in the millimeter range. The length scales determined by critical thickness theory are in good agreement with those obtained by fitting to experimental data of wire torsion.</p>
Fig 2. Sigillaria and Lepidodendron from Dobrudza coalfield. A in Lycophyte Distribution In The Pennsylvannian Of The Dobrudzha Coalfield, Bulgaria And Their Value In Climatic Interpretation
Fig 2. Sigillaria and Lepidodendron from Dobrudza coalfield. A Sigillaria laevigata Brongniart. No. 10614; B Lepidodendron fusiforme (Corda) Unger. No. 15265; C Lepidodendron manabachense Presl sensu Thomas. No. 8647 (Tenchov 1987, pl. 23, fig. 1 as Lepidodendron obovatum).
Fig. 4 in Lycophyte Distribution In The Pennsylvannian Of The Dobrudzha Coalfield, Bulgaria And Their Value In Climatic Interpretation
Fig. 4 Distribution of some genera. A more detail picture that shows species distribution is impractical, because only a few species have a large number of specimens.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.