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2,744 results for “restoration.”

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Data from: Effects of water level and grassland management on alpha and beta diversity of wet grassland birds in restored wetlands

Nearly 60% of European wetlands have been lost to drainage or to the cessation of grassland management. Large amounts of resources are put into wetland restoration with the aim to recover biodiversity. However, few studies have simultaneously evaluated effects of management, wetness and flooding dynamics on biodiversity of restored wetlands such as seasonally flooded wet grasslands. We inventoried bird communities over 4 years at 137 sites (each 3·1 ha) within five restored wet grassland areas in Sweden to investigate whether species richness and occurrence of 12 common wet grassland species were related to (i) local conditions such as management (grazing, mowing and unmanaged areas), basic wetness and spring flooding dynamics. Further, we investigated whether (ii) the composition of the adjacent landscape (20 ha) related to local bird diversity and (iii) species turnover (i.e. beta diversity) differed between sites characterized by their basic wetness, degree of flooding and predominant management regime. Local species richness was positively linked to degree of flooding and basic wetness of grasslands but not to type of grassland management. Species richness tended also to be negatively linked to proportion of forest at the landscape scale. Although variable, the same results were also true concerning the probability of the occurrence of a single species at the local scale. Species turnover between sites, and thus total species richness, was distinctly higher in (i) grazed as compared to mowed grasslands except in dry non-flooded grasslands and (ii) flooded as compared to non-flooded sites. Similar patterns held for the subset of 12 red-listed species. We suggest that the high beta diversity in grazed and flooded grasslands is driven by the heterogeneous vegetation structure, resulting in good conditions for foraging and nesting for several wet grassland bird species. Synthesis and applications. The selection of wetlands for conserving wet grassland birds should prioritize temporary flooded grasslands of moderate wetness, preferably far from forest edges. Restoration and management of wet grasslands should include water level management, removal of shrubs and trees, and low-intensity grazing, whereas mowing could be used in non-flooded grasslands of low basic wetness.

opencc-zeroDec 2014View details →
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Data from: Forest restoration and parasitoid wasp communities in montane Hawai'i

Globally, most restoration efforts focus on re-creating the physical structure (flora or physical features) of a target ecosystem with the assumption that other ecosystem components will follow. Here we investigate that assumption by documenting biogeographical patterns in an important invertebrate taxon, the parasitoid wasp family Ichneumonidae, in a recently reforested Hawaiian landscape. Specifically, we test the influence of (1) planting configurations (corridors versus patches), (2) vegetation age, (3) distance from mature native forest, (4) surrounding tree cover, and (5) plant community composition on ichneumonid richness, abundance, and composition. We sampled over 7,000 wasps, 96.5% of which were not native to Hawai'i. We found greater relative richness and abundance of ichneumonids, and substantially different communities, in restored areas compared to mature forest and abandoned pasturelands. Non-native ichneumonids drive these differences; restored areas and native forest did not differ in native ichneumonid abundance. Among restored areas, ichneumonid communities did not differ by planting age or configuration. As tree cover increased within 120 m of a sampling point, ichneumonid community composition increasingly resembled that found in native forest. Similarly, native ichneumonid abundance increased with proximity to native forest. Our results suggest that restoration plantings, if situated near target forest ecosystems and in areas with higher local tree cover, can facilitate restoration of native fauna even in a highly invaded system.

opencc-zeroDec 2012View details →
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Data from: Strong natural selection during plant restoration favors an unexpected suite of plant traits

Restoration is an opportunity to study natural selection: one can measure the distribution of traits in source propagules used to found populations, compare this with the distribution of traits in successful recruits, and determine the strength and direction of selection on potentially adaptive traits. We asked if natural selection influenced seedling establishment during post-fire restoration in the Great Basin, an area where large-scale restoration occurs with a few widely available cultivars planted over a large range of environmental conditions. We collected seeds from established plants of the perennial grass Elymus elymoides ssp. californicus (squirreltail) at two restoration sites, and compared the distribution of phenotypic traits of surviving plants with the original pool of restoration seeds. Seeds were planted in common gardens for two generations. Plants grown from seeds that established in the field were a non-random subset of the original seeds, with directional selection consistently favoring a correlated suite of traits in both field sites: small plant and seed size, and earlier flowering phenology. These results demonstrate that natural selection can affect restoration establishment in strong and predictable ways, and that adaptive traits in these sites were opposite of the current criteria used for selection of restoration material in this system.

opencc-zeroDec 2011View details →
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Data from: Restoration and management for plant diversity enhances the rate of belowground ecosystem recovery

The positive relationship between plant diversity and ecosystem functioning has been criticized for its applicability at large scales and in less controlled environments that are relevant to land management. To inform this gap between ecological theory and application, we compared recovery rates of belowground properties using two chronosequences consisting of continuously cultivated and independently restored fields with contrasting diversity management strategies: grasslands restored with high plant richness and managed for diversity with frequent burning (n=20) and grasslands restored with fewer species that were infrequently burned (n=15). Restoration and management for plant diversity resulted in 250% higher plant richness. Greater recovery of roots and more predictable recovery of the active microbial biomass across the high diversity management strategy chronosequence corresponded with faster recovery of soil structure. The high diversity grasslands also had greater nutrient conservation indicated by lower available inorganic nitrogen. Thus, mesic grasslands restored with more species and managed for high plant diversity with frequent burning enhances the rate of belowground ecosystem recovery from long-term disturbance at a scale relevant to conservation practices on the landscape.

opencc-zeroDec 2016View details →
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Data from: Co-introduction of native mycorrhizal fungi and plant seeds accelerates restoration of post-mining landscapes

<p>1. Grasslands are among the most threatened terrestrial biomes, and habitat conservation alone will be insufficient to meet biodiversity goals. While restoration of indigenous grasslands is a priority, conflict with economic objectives means that incorporation of alternative habitats is necessary to offset grassland loss. With up to 800,000 km² of land affected by mining globally, there is an opportunity to create additional grassland habitat in post-mining landscapes.</p> <p>2. We aimed to assess whether co-introduction of native arbuscular mycorrhizal (AM) fungi and plants is an efficient means of initializing species rich vegetation recovery in barren post-mining landscapes. We established an experiment in three post-mining areas in Estonia, where we seeded plots with native plant seeds and inoculated them with trap cultured native AM fungi from a similar habitat. We measured the abundance and composition of soil AM fungal and aboveground plant communities in two consecutive years using relevés, high-throughput sequencing and fatty acid profiling.</p> <p>3. Our results demonstrate that co-introduction of native plants and AM fungi is an effective way to establish species rich vegetation in post-mining areas. Co-introduction of symbiotic partners resulted in higher richness, diversity and abundance of plants and AM fungi than when either partner was introduced individually. However, the plant and AM fungal communities in sown and inoculated plots were not distinct from those in uninoculated treatments; they rather formed a subset of all taxa present on the sites but exhibited higher diversity than uninoculated plots.</p> <p>4. Synthesis and applications: This study shows that managing the below-ground microbiome is an essential part of vegetation restoration. The availability of symbiotic partners can be considered a key aspect determining the diversity of restored vegetation. Targeted inoculations with native and habitat-specific AM fungi could therefore increase restoration success.28-Apr-2020</p>

opencc-zeroMay 2020View details →
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Data from: Time for recovery of riparian plants in restored northern Swedish streams: a chronosequence study

A lack of ecological responses in stream restoration projects has been prevalent throughout recent literature with many studies reporting insufficient time for recovery. We assessed the relative importance of time, site variables, and landscape setting for understanding how plant species richness and understory productivity recover over time in riparian zones of northern Swedish streams. We used a space-for-time substitution consisting of 13 stream reaches restored 5–25 years ago, as well as five unrestored channelized reference reaches. We inventoried the riparian zone for all vascular plant species along 60-m study reaches and quantified cover and biomass in plots. We found that while species richness increased with time, understory biomass decreased. Forbs made up the majority of the species added, while the biomass of graminoids decreased the most over time, suggesting that the reduced dominance of graminoids favored less productive forbs. Species richness and density patterns could be attributed to dispersal limitation, with anemochorous species being more associated with time after restoration than hydrochorous, zoochorous, or vegetatively reproducing species. Using multiple linear regression, we found that time along with riparian slope and riparian buffer width (e.g., distance to logging activities) explained the most variability in species richness, but that variability in total understory biomass was explained primarily by time. The plant community composition of restored reaches differed from that of channelized references, but the difference did not increase over time. Rather, different time categories had different successional trajectories that seemed to converge on a unique climax community for that time period. Given our results, timelines for achieving species richness objectives should be extended to 25 years or longer if recovery is defined as a saturation of the accumulation of species over time. Other recommendations include making riparian slopes as gentle as possible given the landscape context and expanding riparian buffer width for restoration to have as much impact as possible.

opencc-zeroDec 2014View details →
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Data from: Habitat restoration promotes pollinator persistence and colonization in intensively managed agriculture

Widespread evidence of pollinator declines has led to policies supporting habitat restoration including in agricultural landscapes. Yet, little is yet known about the effectiveness of these restoration techniques for promoting stable populations and communities of pollinators, especially in intensively managed agricultural landscapes. Introducing floral resources, such as flowering hedgerows, to enhance intensively cultivated agricultural landscapes is known to increase the abundances of native insect pollinators in and around restored areas. Whether this is a result of local short-term concentration at flowers or indicative of true increases in the persistence and species richness of these communities remains unclear. It is also unknown whether this practice supports species of conservation concern (e.g., those with more specialized dietary requirements). Analyzing occupancies of native bees and syrphid flies from 330 surveys across 15 sites over eight years, we found that hedgerow restoration promotes rates of between-season persistence and colonization as compared with unrestored field edges. Enhanced persistence and colonization, in turn, led to the formation of more species-rich communities. We also find that hedgerows benefit floral resource specialists more than generalists, emphasizing the value of this restoration technique for conservation in agricultural landscapes.

opencc-zeroDec 2014View details →
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Data from: Windows of opportunity for germination of riparian species after restoring water level fluctuations: a field experiment with controlled seed banks

1. Restoration activities aiming at increasing vegetation diversity often try to stimulate both dispersal and germination. In wetlands, dispersal and germination are coupled as water and water level fluctuations (WLF) simultaneously influence seed transport and germination conditions (soil moisture). Water regime shifts have been shown to affect vegetation composition. However, the interactions between WLF, dispersal and subsequent germination as drivers of such changes are still poorly understood, especially within the complexity of a field situation. 2. We tested the effect of soil moisture on ten riparian species in the greenhouse and sowed these species on 135 field locations in nine wetlands with recently restored WLF. We used quantile regressions to test the effects of WLF on the window of opportunity for germination from sown seeds and other seeds naturally dispersed to our plots, as well as on community diversity. 3. Soil moisture significantly affected germination both in the greenhouse and in the field. In the complexity of a field situation, a flooding depth just below the soil level, an intermediate flooding duration and a high flooding frequency provided the best opportunities for maximal germination. This was because these conditions enhanced germination from the seed bank as well as increasing germination from dispersed seeds. Seedling diversity showed identical patterns. 4. Other known (i.e., light conditions) and unknown factors played a role as we found low and variable germination, even under optimal conditions. We found evidence that WLF can affect vegetation zonation as flooded seedling communities contained more species with high moisture affinity. 5. Synthesis and applications. Water level fluctuations provide clear windows of opportunity for germination both from the seed bank and from dispersed seeds. Water regime changes are therefore likely to strongly affect recruitment opportunities and subsequent community assembly in riparian ecosystems, for instance through climate change or management. Water level fluctuations can be used as management tool to stimulate plant recruitment and seedling diversity in riparian wetlands.

opencc-zeroDec 2013View details →
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Data from: Passive restoration of sub-tropical grassland after abandonment of cultivation

Passive restoration of grasslands after the abandonment of cultivation may be a viable restoration option where seed sources from remnant grasslands are available, and if the risk of deflected succession is low. Passive restoration of subtropical grassland in Queensland, Australia was evaluated along a chronosequence of abandoned cultivation (fallow) paddocks. Plant communities in fallow paddocks were compared with nearby remnant grassland. On average, species richness recovers after 60 years of abandonment and floristic composition shows affinities with nearby remnant grassland (Bray-Curtis ˜ 0·6). The risk of deflected succession, such as dominance by exotic grasses, has apparently been low in this ecosystem. Annual grasses and forbs are rapid colonizers of the abandoned fields, and richness of perennial forbs exhibits near-linear recovery. Perennial grasses are relatively slow to establish but all except two species have statistically insignificant differences in abundance between remnant grassland and fallow fields after 20 years. The perennial grasses that recover most rapidly in fallow paddocks have disseminules that are adorned with appendages for wind dispersal including the most important dominant grass, Dichanthium sericeum. The perennial grasses that are slowest to recover are probably less effective dispersers. Synthesis and applications. Passive restoration of grasslands after the abandonment of cultivation can be a viable contribution to grassland conservation where there is an adequate matrix of remnant grasslands in the vicinity of fallows, perennial exotic species do not monopolize fallows and the dominant native grasses are well dispersed.

opencc-zeroDec 2014View details →
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Data from: Genetic differentiation within multiple common grassland plants supports seed transfer zones for ecological restoration

Ecological restoration of grasslands is increasingly based on regional seeds derived from predefined seed transfer zones. However, the degree and spatial pattern of genetic differentiation among provenances of different seed transfer zones is largely unknown. We assessed the genetic differentiation among eight out of 22 German seed transfer zones for seven common grassland species (Arrhenatherum elatius, Centaurea jacea, Daucus carota, Galium album, Hypochaeris radicata, Knautia arvensis and Lychnis flos-cuculi) using AFLP markers. We analysed genetic population structure with AMOVA and Bayesian cluster analysis and tested for isolation by distance and isolation by environment. In all of the investigated species, almost all pairs of provenances were genetically differentiated. Bayesian cluster analysis revealed species-specific numbers and spatial patterns of gene pools, with between two (Arrhenatherum) and eight clusters (Lychnis). Most investigated seed transfer zones represented a unique gene pool in the majority of the species. We found isolation by distance in four species, isolation by environment, driven by climatic seasonality, in three species, and a lack of both in three species. Thus, the observed genetic differentiation appears to be caused by both neutral and adaptive processes. Synthesis and applications. Our study shows that grassland plants are indeed strongly genetically differentiated across Germany supporting the strategy of seed transfer zones for ecological restoration. Although the predefined seed transfer zones are unlikely to match the exact genetic structure of many species, they serve their purpose by capturing a substantial amount of intraspecific genetic variation across species.

opencc-zeroDec 2015View details →
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Data from: Using metagenomics to show the efficacy of forest restoration in the New Jersey Pine Barrens

The Franklin Parker Preserve within the New Jersey Pine Barrens contains 5,000 acres of wetlands habitat, including old-growth Atlantic White Cedar (or AWC; Chamaecyparis thyoides) swamps, cranberry bogs, and former cranberry bogs undergoing restoration into AWC forests. This study showed that the C-use efficiency was greater in the old-growth AWC soils than in soils from 8-year old mid-stage restored AWC stands, which were greater than found in soil from 4-year old AWC stands—the latter two stands being restored from long-term cranberry bogs. A metagenomic analysis of eDNA extracted from these soils showed that the C-cycle trends were associated with increases in the relative numbers of DNA sequences from several copiotrophic bacterial groups (Bacteroidetes, and Proteobacteria), complex C decomposing fungal groups ( Sordiomycetes, Mortierellales, and Thelephorales), and collembolan and formicid invertebrates. All groups are indicators of successionally more advanced soils, and critical for soil C-cycle activities. These data suggest that the restoration activities studied are enhancing critical guilds of soil biota, and increasing C-use efficiency in the soils of restored habitats, and that the use of metagenomic analysis of soil eDNA can be used in the development of assessment models for soil recovery of wetlands following restoration.

opencc-zeroDec 2016View details →
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Data from: Restoration as mitigation: analysis of stream mitigation for coal mining impacts in southern Appalachia

Compensatory mitigation is commonly used to replace aquatic natural resources being lost or degraded but little is known about the success of stream mitigation. This article presents a synthesis of information about 434 stream mitigation projects from 117 permits for surface mining in Appalachia. Data from annual monitoring reports indicate that the ratio of lengths of stream impacted to lengths of stream mitigation projects were &lt; 1 for many projects, and most mitigation was implemented on perennial streams while most impacts were to ephemeral and intermittent streams. Regulatory requirements for assessing project outcome were minimal; visual assessments were the most common and 97% of the projects reported suboptimal or marginal habitat even after 5 years of monitoring. Less than a third of the projects provided biotic or chemical data; most of these were impaired with biotic indices below state standards and stream conductivity exceeding federal water quality criteria. Levels of selenium known to impair aquatic life were reported in 7 of the 11 projects that provided Se data. Overall, the data show that mitigation efforts being implemented in southern Appalachia for coal mining are not meeting the objectives of the Clean Water Act to replace lost or degraded streams ecosystems and their functions.

opencc-zeroDec 2013View details →
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Data from: The robustness and restoration of a network of ecological networks

Understanding species' interactions and the robustness of interaction networks to species loss is essential to understand the effects of species' declines and extinctions. In most studies, different types of networks (such as food webs, parasitoid webs, seed dispersal networks, and pollination networks) have been studied separately. We sampled such multiple networks simultaneously in an agroecosystem. We show that the networks varied in their robustness; networks including pollinators appeared to be particularly fragile. We show that, overall, networks did not strongly covary in their robustness, which suggests that ecological restoration (for example, through agri-environment schemes) benefitting one functional group will not inevitably benefit others. Some individual plant species were disproportionately well linked to many other species. This type of information can be used in restoration management, because it identifies the plant taxa that can potentially lead to disproportionate gains in biodiversity.

opencc-zeroDec 2011View details →
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Data from: Time-lag in responses of birds to Atlantic Forest fragmentation: restoration opportunity and urgency

There are few opportunities to evaluate the relative importance of landscape structure and dynamics upon biodiversity, especially in highly fragmented tropical landscapes. Conservation strategies and species risk evaluations often rely exclusively on current aspects of landscape structure, although such limited assumptions are known to be misleading when time-lag responses occur. By relating bird functional-group richness to forest patch size and isolation in ten-year intervals (1956, 1965, 1978, 1984, 1993 and 2003), we revealed that birds with different sensitivity to fragmentation display contrasting responses to landscape dynamics in the Brazilian Atlantic Forest. For non-sensitive groups, there was no time-lag in response: the recent degree of isolation best explains their variation in richness, which likely relates to these species' flexibility to adapt to changes in landscape structure. However, for sensitive bird groups, the 1978 patch area was the best explanatory variable, providing evidence for a 25-year time-lag in response to habitat reduction. Time-lag was more likely in landscapes that encompass large patches, which can support temporarily the presence of some sensitive species, even when habitat cover is relatively low. These landscapes potentially support the most threatened populations and should be priorities for restoration efforts to avoid further species loss. Although time-lags provide an opportunity to counteract the negative consequences of fragmentation, it also reinforces the urgency of restoration actions. Fragmented landscapes will be depleted of biodiversity if landscape structure is only maintained, and not improved. The urgency of restoration action may be even higher in landscapes where habitat loss and fragmentation history is older and where no large fragment remained to act temporarily as a refuge.

opencc-zeroDec 2015View details →
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Data from: Which landscape size best predicts the influence of forest cover on restoration success? – A global meta-analysis on the scale of effect

Landscape context is a strong predictor of species persistence, abundance and distribution, yet its influence on the success of ecological restoration remains unclear. Thus, a primary question arises: which landscape size best predicts the effects of forest cover on restoration success? To answer this question, we conducted a global meta-analysis for biodiversity (mammals, birds, invertebrates, herpetofauna and plants) and measures of vegetation structure (cover, density, height, biomass and litter). Response ratios were calculated for comparisons between reference (e.g. old-growth forest) and disturbed sites (degraded or restored). Using an information-theoretic approach, mean response ratio (restoration success) and response ratio variance (restoration predictability) within each study landscape were regressed against the percentage of overall (summed forest cover) and contiguous (summed pixels of ≥60% forest cover) forest within eight different buffer sizes of radius 5–200 km (at 1-km resolution). We included 247 studies encompassing 196 study landscapes and 4360 quantitative comparisons. The best buffer (landscape) size varied for the following: (i) overall and contiguous forest cover, (ii) biodiversity and vegetation structure and (iii) mean response ratio and response ratio variance. Only plant biodiversity was influenced by overall forest cover (buffer size of 5, 10 and 200 km radii), while plants (10 and 200 km radii), mammals (5, 10 and 50–200 km radii), invertebrates (5 and 10 km radii), cover (5 km radii), height (5 km radii) and litter (100 km radii) were influenced by contiguous forest cover. Overall, mean response ratio and response ratio variance were positively and negatively nonlinearly related with both overall and contiguous forest cover, respectively. We reveal for the first time a clear pattern of increasing restoration success and decreasing uncertainty as contiguous forest cover increases. We also indicate preliminary recommended buffer sizes for investigating landscape restoration effects on biodiversity and vegetation structure. However, the coarse grain and variability in the data mean the optimal landscape size may not have been detected; thus, further research is needed. Synthesis and applications. When setting targets for ecological restoration, policymakers and restoration practitioners should account for the following: (i) the landscape context, particularly the amount of contiguous habitat up to 10 km around a disturbed site, and (ii) the uncertainty in restoration success, as it increases when contiguous forest cover falls below about 50%.

opencc-zeroDec 2014View details →
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Data from: Population history provides foundational knowledge for utilizing and developing native plant restoration materials

A species' population structure and history are critical pieces of information that can help guide the use of available native plant materials in restoration treatments and decide what new native plant materials should be developed to meet future restoration needs. In the western United States, Pseudoroegneria spicata (bluebunch wheatgrass; Poaceae) is an important component of grassland and shrubland plant communities and commonly used for restoration due to its drought resistance and competitiveness with exotic weeds. We used next-generation sequencing data to investigate the processes that shaped P. spicata's geographic pattern of genetic variation across the Intermountain West. Pseudoroegneria spicata's genetic diversity is partitioned into populations that likely differentiated since the Last Glacial Maximum. Adjacent populations display varying magnitudes of historical gene flow, with migration rates ranging from multiple migrants per generation to multiple generations per migrant. When considering the commercial germplasm sources available for restoration, genetic identities remain representative of the wildland localities from which germplasm sources were originally developed, and they maintain high levels of heterozygosity and nucleotide diversity. However, the commercial germplasm sources represent a small fraction of the overall genetic diversity of P. spicata in the Intermountain West. Given the low migration rates and long divergence times between some pairs of P. spicata populations, using commercial germplasm sources could facilitate undesirable restoration outcomes when used in certain geographic areas, even if the environment in which the commercial materials thrive is similar to that of the restoration site. As such, population structure and history can be used to provide guidance on what geographic areas may need additional native plant materials so that restoration efforts support species and community resilience and improve outcomes.

opencc-zeroDec 2017View details →
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Data from: Using filter-based community assembly models to improve restoration outcomes

1. Ecological filter models derived from community assembly theory can inform restoration planning by highlighting management actions most likely to affect community composition. Despite growing interest in these models, many restoration studies solely manipulate a single filter—the biotic filter by altering interspecific competition in studies—while ignoring abiotic and dispersal filters that may also influence restoration success. 2. To examine how manipulating all three filters (biotic, abiotic, dispersal) affected restoration in an annual-type grassland, we seeded native forbs from the same functional group as a target invader to increase biotic resistance to invasion (biotic filter), cut standing biomass and either removed it or returned it to plots as litter to alter light conditions (abiotic filter), and added native forbs at different seeding rates to alter density of establishing native populations (dispersal filter). We measured restoration success by recording native species and invader cover in plots. 3. The addition of native species with phenological and morphological traits similar to the target invader reduced invasion and increased native populations, but only in litter-free plots when high-densities of native seed were added. 4. Seeding two species with functional traits similar to the invader was more effective at reaching restoration goals than seeding just one functionally similar species. As such, trait differences among restoration species, even species belonging to the same functional group, may increase biotic resistance to invasion in restored communities. 5. Litter removal altered native-invader interactions. When litter was kept, added natives did not reduce invader cover. However, when litter was removed, added natives led to declines in invader cover. 6. Increasing native seeding rates led to larger native populations and increased invasion resistance. 7. Synthesis and applications. In this study, simultaneously manipulating biotic, abiotic and dispersal filters was necessary to optimize restoration outcomes. In particular, the biotic filter only contributed to successful restoration outcomes under abiotic and dispersal conditions that were created through management actions specifically targeting these two additional filters. Restoration planning based on filter models should incorporate actions that target all three filters, rather than solely focusing on the biotic filter.

opencc-zeroDec 2013View details →
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Data from: Rapid adaptive phenotypic change following colonization of a newly restored habitat

Real-time observation of adaptive evolution in the wild is rare and limited to cases of marked, often anthropogenic, environmental change. Here we present the case of a small population of reed warblers (Acrocephalus scirpaceus) over a period of 19 years (1996–2014) after colonizing a restored wetland habitat in Malta. Our data show a population decrease in body mass, following a trajectory consistent with a population ascending an adaptive peak, a so-called Ornstein–Uhlenbeck process. We corroborate these findings with genetic and ecological data, revealing that individual survival is correlated with body mass, and more than half of the variation in mean population fitness is explained by variation in body mass. Despite a small effective population size, an adaptive response has taken place within a decade. A founder event from a large, genetically variable source population to the southern range margin of the reed warbler distribution likely facilitated this process.

opencc-zeroDec 2016View details →
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Data from: A test of the umbrella species approach in restored floodplain ponds.

1.The umbrella species approach, where conservation actions targeted for one or a group of species should benefit the broader community, may provide an effective framework to guide habitat restoration. This requires congruence in the response of umbrella and co-occurring species to environmental stress and recovery, and the identification of potential mechanisms by which co-occurring species benefit from conservation of an umbrella species. 2.Past evaluations of this approach have considered only the presence/absence of umbrella species. In addition to presence/absence, we quantified abundance and biomass of both umbrella and co-occurring species to support a more quantitative evaluation of species co-occurrence. Floodplain ponds are restored in British Columbia and the Pacific Northwest to benefit coho salmon Oncorhynchus kisutch, a presumptive umbrella species. To test its effectiveness as an umbrella species, we assessed the relationships between species richness, abundance and biomass of aquatic vertebrates, including vertebrates of conservation concern ("listed"), and benthic invertebrates and the abundance and biomass of juvenile coho. We used ordination to evaluate relationships between species' abundance and biomass and environmental attributes. 3.Positive relationships were identified between coho abundance and biomass and species richness, abundance and biomass of fish and listed species. These relationships were negative for benthic invertebrates. Listed species were located close to coho in ordinations, suggesting they respond to similar environmental features while benthic invertebrates clustered away from coho. 4.Synthesis and applications. We found that where our umbrella species coho is most productive, so are other listed species and fish in general, a relationship that would not have been evident had we evaluated species richness alone. We also reported strong relationships between some environmental features manipulated in the habitat restoration and the presence and productivity of coho and co-occurring species. Our study demonstrates the umbrella species approach has potential to guide habitat restoration when there is congruence in the response of umbrella and co-occurring species to environmental attributes that can be manipulated in the restoration. Where this is possible, one can use restoration designed for one or several umbrella species and successfully restore habitats that are viable for other species, including listed species.

opencc-zeroDec 2013View details →
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Data from: Ants as ecological indicators of rainforest restoration: community convergence and the development of an Ant Forest Indicator Index in the Australian wet tropics

Ecosystem restoration can help reverse biodiversity loss, but whether faunal communities of forests undergoing restoration converge with those of primary forest over time remains contentious. There is a need to develop faunal indicators of restoration success that more comprehensively reflect changes in biodiversity and ecosystem function. Ants are an ecologically dominant faunal group and are widely advocated as ecological indicators. We examine ant species and functional group responses on a chronosequence of rainforest restoration in northern Australia, and develop a novel method for selecting and using indicator species. Four sampling techniques were used to survey ants at 48 sites, from grassland, through various ages (1–24 years) of restoration plantings, to mature forest. From principal components analysis of seven vegetation metrics, we derived a Forest Development Index (FDI) of vegetation change along the chronosequence. A novel Ant Forest Indicator Index (AFII), based on the occurrences of ten key indicator species associated with either grassland or mature forest, was used to assess ant community change with forest restoration. Grasslands and mature forests supported compositionally distinct ant communities at both species and functional levels. The AFII was strongly correlated with forest development (FDI). At forest restoration sites older than 5–10 years that had a relatively closed canopy, ant communities converged on those of mature rainforest, indicating a promising restoration trajectory for fauna as well as plants. Our findings reinforce the utility of ants as ecological indicators and emphasize the importance of restoration methods that achieve rapid closed-canopy conditions. The novel AFII assessed restoration status from diverse and patchily distributed species, closely tracking ant community succession using comprehensive species-level data. It has wide applicability for assessing forest restoration in a way that is relatively independent of sampling methodology and intensity, and without a need for new comparative data from reference sites.

opencc-zeroDec 2016View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record