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1,344
datasets available to search
ShareScore release 0.9.0
Dataset results
1,344 results for “ribosome”
Cell type-specific ribosome profiling in vivo.
GEO Series GSE51424. Homo sapiens; Mus musculus. 25 samples. Type: Expression profiling by high throughput sequencing.
Cytosolic Ribosomal Protein Haploinsufficiency affects Mitochondrial Morphology and Respiration
GEO Series GSE280071. Caenorhabditis elegans. 40 samples. Type: Expression profiling by high throughput sequencing; Other.
Activation of GCN2 by Ribosome Stalling Links Translation Elongation with Translation Initiation
GEO Series GSE79930. Mus musculus. 36 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing.
Epigenetic, ribosomal, and immune dysregulation in Paediatric Acute Neuropsychiatric Syndrome [scRNA-Seq]
GEO Series GSE278679. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Codon-specific ribosome stalling reshapes translational dynamics during branched-chain amino acid starvation
GEO Series GSE291653. Mus musculus. 18 samples. Type: Other.
Global analysis of truncated RNA ends reveals novel insights into ribosome stalling in plants
GEO Series GSE77549. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing.
RNA-dependent RNA polymerases-synthesized antisense ribosomal siRNAs silence pre-rRNA via the nuclear RNAi pathway in C. elegans
GEO Series GSE90927. Caenorhabditis elegans. 14 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling
GEO Series GSE186634. Saccharomyces cerevisiae. 33 samples. Type: Expression profiling by high throughput sequencing.
Effect of trans-vaccenic acid(TVA) diet on 16S ribosomal RNA (rRNA) expression of mouse gut microbiome
GEO Series GSE202266. feces metagenome. 14 samples. Type: Other.
Aneuploidy induces premature aging in yeast due to defects in Ribosome Quality Control [MoBYSeqData]
GEO Series GSE269237. Saccharomyces cerevisiae YPS1009. 18 samples. Type: Other.
Ribosome footprinting of wild-type Col-0 and rlmnl3 mutant
GEO Series GSE127146. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Rph1 coordinates transcription of ribosomal protein gene and ribosomal RNA to control cell growth under nutrient stress conditions
GEO Series GSE141034. Saccharomyces cerevisiae. 24 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Using DMS-MaPseq to dissect structural differences of ribosomal RNA in different pre-40S intermediates
GEO Series GSE160161. Saccharomyces cerevisiae. 30 samples. Type: Other.
Ribosome profiling reveals multiple roles of SecA in cotranslational protein export
GEO Series GSE185572. Escherichia coli. 32 samples. Type: Expression profiling by high throughput sequencing.
CLIP-Seq Analysis Enables the Design of Ribosomal RNA Bait Oligonucleotides That Protect Against C9ORF72 ALS/FTD-Associated Poly-GR Pathophysiology
GEO Series GSE182008. Homo sapiens. 5 samples. Type: Other.
Regulation of ribosomal gene expression and senescence by a PML-mTOR-RONIN nuclear complex in triple-negative breast cancer [RNA-seq_shPML]
GEO Series GSE283106. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Data from: Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides
Background: Various bacteria can use non-ribosomal peptide synthesis (NRPS) to produce peptides or other small molecules. Conserved features within the NRPS machinery allow the type, and sometimes even the structure, of the synthesized polypeptide to be predicted. Thus, bacterial genome mining via in silico analyses of NRPS genes offers an attractive opportunity to uncover new bioactive non-ribosomally synthesized peptides. Xanthomonas is a large genus of Gram-negative bacteria that cause disease in hundreds of plant species. To date, the only known small molecule synthesized by NRPS in this genus is albicidin produced by Xanthomonas albilineans. This study aims to estimate the biosynthetic potential of Xanthomonas spp. by in silico analyses of NRPS genes with unknown function recently identified in the sequenced genomes of X. albilineans and related species of Xanthomonas. Results: We performed in silico analyses of NRPS genes present in all published genome sequences of Xanthomonas spp., as well as in unpublished draft genome sequences of Xanthomonas oryzae pv. oryzae strain BAI3 and Xanthomonas spp. strain XaS3. These two latter strains, together with X. albilineans strain GPE PC73 and X. oryzae pv. oryzae strains X8-1A and X11-5A, possess novel NRPS gene clusters and share related NRPS-associated genes such as those required for the biosynthesis of non-proteinogenic amino acids or the secretion of peptides. In silico prediction of peptide structures according to NRPS architecture suggests eight different peptides, each specific to its producing strain. Interestingly, these eight peptides cannot be assigned to any known gene cluster or related to known compounds from natural product databases. PCR screening of a collection of 94 plant pathogenic bacteria indicates that these novel NRPS gene clusters are specific to the genus Xanthomonas and are also present in Xanthomonas translucens and X. oryzae pv. oryzicola. Further genome mining revealed other novel NRPS genes specific to X. oryzae pv. oryzicola or Xanthomonas sacchari. Conclusions: This study revealed the significant potential of the genus Xanthomonas to produce new non-ribosomally synthesized peptides. Interestingly, this biosynthetic potential seems to be specific to strains of Xanthomonas associated with monocotyledonous plants, suggesting a putative involvement of non-ribosomally synthesized peptides in plant-bacteria interactions.
Fig. 1 in Karyotype characterization of Mugil incilis Hancock, 1830 (Mugiliformes: Mugilidae), including a description of an unusual co-localization of major and minor ribosomal genes in the family
Fig. 1. Giemsa-stained karotype of Mugil incilis. Scale bar = 10 micron.
Figure 1 from: Sutton BD, Steck GJ, Norrbom AL, Rodriguez EJ, Srivastava P, Alvarado NN, Colque F, Landa EY, Sánchez JJL, Quisberth E, Peñaranda EA, Clavijo PAR, Alvarez-Baca JK, Zapata TG, Ponce P (2015) Nuclear ribosomal internal transcribed spacer 1 (ITS1) variation in the Anastrepha fraterculus cryptic species complex (Diptera, Tephritidae) of the Andean region. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 175-191. https://doi.org/10.3897/zookeys.540.6147
Figure 1 - Anastrepha fraterculus collection localities.
Figure 4 from: Sutton BD, Steck GJ, Norrbom AL, Rodriguez EJ, Srivastava P, Alvarado NN, Colque F, Landa EY, Sánchez JJL, Quisberth E, Peñaranda EA, Clavijo PAR, Alvarez-Baca JK, Zapata TG, Ponce P (2015) Nuclear ribosomal internal transcribed spacer 1 (ITS1) variation in the Anastrepha fraterculus cryptic species complex (Diptera, Tephritidae) of the Andean region. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 175-191. https://doi.org/10.3897/zookeys.540.6147
Figure 4 - Geographical distribution of Andean Anastrepha fraterculus ITS1 sequence types.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.