Skip to main content
Powered by ShareScore

Find research datasets worth reusing

Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.

1,353

datasets available to search

ShareScore release 0.9.0

Reset

Dataset results

1,353 results for “single-cell transcriptomics”

Learn how ShareScore rates datasets ↗
geo24/100

Integrated Single-Cell and Spatial Transcriptomics Reveal Androgen-Driven Disruptions in PCOS Ovarian Microenvironment

GEO Series GSE268919. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenOct 2024View details →
geo24/100

Integrative single-cell chromatin and transcriptome profiling uncovers cell-type specific regulatory interactions

GEO Series GSE140203. Homo sapiens; Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.

openGEO-OpenOct 2020View details →
geo24/100

Single-cell transcriptomic analysis of tumor-infiltrated immune cells from myeloid-specific Usp18 knockout mice

GEO Series GSE173705. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenFeb 2024View details →
geo24/100

Single-cell transcriptomics of adult gd T-cell lineage commitment highlights its TCR-instructive nature

GEO Series GSE184545. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJan 2022View details →
geo24/100

Single-cell transcriptomic analysis (scRNA-seq) of healthy adult human parietal pleura

GEO Series GSE243446. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenSep 2023View details →
geo24/100

Single-cell transcriptomics reveals transcriptional programs underlying male and female cell fate during Plasmodium falciparum gametocytogenesis

GEO Series GSE226145. Plasmodium falciparum. 8 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenMay 2024View details →
geo24/100

single-cell transcriptomes of meningeal and CP T cells in young and aged mice

GEO Series GSE295632. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJun 2025View details →
geo24/100

Single-cell transcriptomic profiling of TAE684-sensitive, intermediate resistant and fully resistant Kelly cells.

GEO Series GSE115251. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenAug 2019View details →
geo24/100

Single-cell transcriptomic reconstruction of the human hair cycle: Capturing the temporal dynamics of skin tissue remodeling

GEO Series GSE237520. Homo sapiens. 22 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJul 2025View details →
geo24/100

Single-cell transcriptome sequencing of macrophages in acute kidney injury

GEO Series GSE174324. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenFeb 2022View details →
geo24/100

Single-Cell Transcriptomics on Young and Aged Bone Marrow Megakaryocyte Progenitor Cells

GEO Series GSE289417. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenDec 2025View details →
geo24/100

Single-cell simultaneous metabolome and transcriptome profiling revealing metabolite-gene correlation networ

GEO Series GSE270852. Mus musculus. 35 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenSep 2025View details →
geo24/100

Single-cell transcriptomic analysis of PB and BM NK cells from severe aplastic anemia patients

GEO Series GSE214207. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenSep 2022View details →
geo24/100

Single-cell transcriptomics of cultured human amniotic fluid cells from the second trimester reveals their heterogeneity

GEO Series GSE206696. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJul 2023View details →
geo24/100

Single-cell transcriptome analysis in D. discoideum (AX4) in different developmental stages

GEO Series GSE153795. Dictyostelium discoideum AX4. 24 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenApr 2021View details →
geo24/100

Single-cell transcriptomics reveal the dynamic of cancer stem-like cells during cholangiocarcinoma progression

GEO Series GSE233623. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenDec 2023View details →
geo24/100

Single-cell RNA transcriptome reveals embryonic origin of offspring fibrosis due to maternal obesity

GEO Series GSE278631. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenDec 2024View details →
geo24/100

Defining Inflammatory Cell States in Acute and Chronic Pulmonary Infection with Pseudomonas aeruginosa by Single-Cell Transcriptomics

GEO Series GSE192890. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJan 2023View details →
geo24/100

Single-cell transcriptomics reveals widespread heterogeneity in gene regulation and RNA processing in stimulated immune cells

GEO Series GSE41265. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenMay 2013View details →
geo24/100

Single-cell transcriptome and cell-specific network analysis reveal the reparative effect of NT-4 supplementation in preantral follicles grown in vitro

GEO Series GSE177031. Mus musculus. 19 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenSep 2021View details →

ScienceDex guides

Understand access before you commit

These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

ScienceDex for faculty

Your academic CV and NIH biosketch

Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.