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2,271 results for “transporte”
Data set for "Electrical control of hybrid exciton transport in a van der Waals heterostructure"
<p>Data set for "Electrical control of hybrid exciton transport in a van der Waals heterostructure"</p>
Simulations for: The Energetics and Ion Coupling of Cholesterol Transport Through Patched1
<p><strong>Free energy profiles:</strong></p> <p>Coarse-grained (CG) potential of mean force (PMF) free energy and histogram outputs, obtained via the gromacs weighted-histogram analysis method (WHAM). PMF profile numbers match those described in the accompanying manuscript for cholesterol movement between the:</p> <p>- PTCH1-molA ECD base and the sterol binding domain (SBD) (PMF_1a_PTCH1_molA-SHH_cholesterol)</p> <p>- PTCH1-molB ECD base and the SBD (PMF_1a_PTCH1_molB-free_cholesterol) </p> <p>- PTCH1-molA ECD base and the sterol sensing domain (SSD) (PMF_1b_PTCH1_molA-SHH_cholesterol)</p> <p>- PTCH1-molA SSD and the membrane (PMF_2_PTCH1_molA-SSD_cholesterol_OHup)</p> <p>- PTCH1-molB SSD and the membrane (PMF_2_PTCH1_molB-SSD_cholesterol_OHup)</p> <p>- PTCH1-molB SSD and the membrane in a flipped conformation (PMF_2_PTCH1_molB-SSD_cholesterol_OHdown)</p> <p>- Membrane and solvent (PMF_3_Membrane_cholesterol)</p> <p>- PTCH1-molA SBD and the solvent (PMF_4_PTCH1_molA-SSH_cholesterol)</p> <p>- PTCH1-molB SBD and the solvent (PMF_4_PTCH1_molB-free_cholesterol)</p> <p>2000 rounds of Bayesian Bootstrapping were performed.</p> <p><strong>File description for each system:</strong></p> <p>- histo.xvg: umbrella window histograms</p> <p>- bsres.xvg: Average free energy profile and computed bootstrapping error. </p> <p> </p> <p><strong>Atomistic simulations:</strong></p> <p>Subset of atomistic molecular dynamics simulations of wild-type (WT) Patched1 (PTCH1) and Dispatched1 (DISP1) in distinct ion-bound states:</p> <p>- PTCH1 with Na+ bound at Site 1 initially (PTCH1_WT_Na_Site1)</p> <p>- PTCH1 apo in 0.15 M NaCl (PTCH1_WT_apo_inNaCl)</p> <p>- PTCH1 apo in 0.15 M KCl (PTCH1_WT_apo_inKCl)</p> <p>- PTCH1 with 3 x Na+ ions bound to anionic triad residues (PTCH1_WT_3xNa)</p> <p>- PTCH1 with 3 x K+ ions bound to anionic triad residues (PTCH1_WT_3xK)</p> <p>- DISP1 apo in 0.15 M NaCl (DISP1_WT_apo)</p> <p>- DISP1 with 3 x Na+ ions bound to anionic triad residues (DISP1_WT_3xNa)</p> <p>- DISP1 with 2 x Na+ ions bound, generated by sequential ion removal from the end of DISP1_WT_3xNa simulations (DISP1_WT_2xNa)</p> <p>- DISP1 with 1 x Na+ ion bound, generated by sequential ion removal from the end of DISP1_WT_2xNa simulations (DISP1_WT_1xNa)</p> <p>- DISP1 without Na+ bound, generated by sequential ion removal from the end of DISP1_WT_1xNa simulations (DISP1_WT_0xNa)</p> <p>All simulations were run for 3 x 100 ns except for PTCH1_WT_apo_inNaCl which was run for 3 x 50 ns. The PTCH1 and DISP1 conformations were obtained from the Protein Data Bank (PDB IDs: 6DMY, 7RPH). </p> <p><strong>File description for each system:</strong></p> <p>- md_fit_firstframe.pdb : Initial frame used for atomistic simulations (replicate 1, each replicate equilibrated independently). </p> <p>- md_fit_<em>X</em>.xtc : Gromacs trajectory file for each replicate (X=replicate number). </p>
Dataset for the Figure 2 in manuscript "Numerical study of coupled water and vapour flow, heat transfer, and solute transport in variably-saturated deformable soil during freeze-thaw cycles"
<p>This dataset includes the gathered experimental measurements of a freezing test by Wu (2017) for the model's verification shown in Figure 2 of the manuscript entitled 'Numerical study of coupled water and vapour flow, heat transfer, and solute transport in variably-saturated deformable soil during freeze-thaw cycles'' by Huang, X., and Rudolph, D.L.</p>
Modeling liquid transport in the Earth's mantle as two-phase flow: Effect of an enforced positive porosity on liquid flow and mass conservation
<p>These data files include the raw data for the figures shown in Lee et al. titled as 'Modeling liquid transport in the Earth’s mantle as two-phase flow: Effect of an enforced positive porosity on liquid flow and mass conservation'. <br> </p>
Expulsion mechanism of the substrate-translocating subunit in ECF transporters
<p>Data for coarse-grained molecular dynamics simulations (final snapshots, cleaned trajectories, starting structure/simulation parameters) described in "Expulsion mechanism of the substrate-translocating subunit in ECF transporters".</p>
Micro-macro model of multicomponent reactive transport in a multimineral system
<p>This SEM image is from this article "Quantification of mineral accessible surface area and flow-dependent fluid-mineral reactivity at the pore scale". https://doi.org/10.1016/j.chemgeo.2020.120042</p>
Tidal Effects on Dynamics and Freshwater Transport of a Medium-scale River Plume with Multiple Outlets
<p>Data for submitted paper "Tidal Effects on Dynamics and Freshwater Transport of a Medium-scale River Plume with Multiple Outlets"</p>
Dataset associated with paper "On the contribution of transient diabatic processes to ocean heat transport and temperature variability"
<p><strong>Data repository for Yung & Holmes (2023) </strong><i><strong>On the contribution of transient diabatic processes to ocean heat transport and temperature variability</strong></i><strong>, submitted to Journal of Physical Oceanography</strong></p><p>This repository contains:</p><p>- processed global ocean model data (including all data required to reproduce figures)</p><p>- analysis scripts to create figures (extra analysis and computation scripts are available at https://github.com/claireyung/Eddy_Diathermal_Code)</p><p>- 1D mixing model code (also available at https://github.com/claireyung/Diff1D/tree/Claire_2022)</p><p>Files: </p><p>- Diff1D.zip contains matlab code, figure code and output data</p><p>- DHT-MHT-Paper_Plots.ipynb contains figure code for most paper figures</p><p>- Seasonal_range_SST_SHF_MLD.ipynb contains figure code for Fig. 6</p><p>- 10Year-025-Monthly_decomp.ipynb, 1Year-025-Daily_decomp.ipynb demonstrate analysis binning process to go from model data to processed data</p><p>Processed data:</p><p>- ocean_grid.nc, output000fwmass_m_copy.nc have grid information</p><p>- ocean_heat_mean.nc, ocean_month_mean.nc, ocean_wmass_mean.nc contain 10 year means of model diagnostics</p><p>- seasonal_climatology_monthly_temp_SF_MX_mld_compress.nc contains monthly climatology used for Fig. 6</p><p>- min_SST_10yr_daily_data.nc and max_SST_10yr_daily_data.nc have the maximum and minimum daily average SST</p><p>- 10day_mean_10year_means.nc, 2mo_mean_10year_means.nc, sc_2mo_mean_10year_means.nc, 1day_mean_10year_means.nc, Mean_10year_means.nc, True_10year_means.nc are processed and binned data at the various timescales for plotting.</p><p>The model used is the 0.25 degree RYF version of ACCESS-OM2 (Kiss et al. 2020, GMD). The configuration used to run the model can be found here: https://github.com/claireyung/025deg_jra55_ryf/tree/norediGM_run_diaT_exdiags_mixingterms_smallterms . The zenodo repository https://zenodo.org/records/10052149 contains the files needed to run the model.</p><p>Contact: claire.yung@anu.edu.au</p>
Characterizing the diversity of enteric neurons using Dopamine Transporter (DAT)-Cre reporter mice
<p>The enteric nervous system (ENS) comprises a complex network of neurons whereby a subset appears to be dopaminergic, although the characteristics, roles, and implications in disease are less understood. Most investigations relating to enteric dopamine (DA) neurons rely on immunoreactivity to tyrosine hydroxylase (TH) - a rate-limiting enzyme in the production of DA. However, TH immunoreactivity is likely to provide an incomplete picture given previous work has showed that some DA neurons contain little if any TH and its levels tend to be decreased in response to cellular stress. The study herein provides a comprehensive characterization of DA neurons in the gut using a well-accepted reporter mouse line, expressing a fluorescent protein under control of the DA transporter (DAT) promoter. Our findings confirm a unique localization of DA neurons in the gut and unveil the discrete subtypes of DA neurons in this organ, which we characterized using both immunofluorescence and single-cell transcriptomics, validated by <em>in situ</em>hybridization. We observed distinct subtypes of DAT neurons expressing co-transmitters and modulators across both plexuses; some of them likely co-releasing acetylcholine, and a smaller population likely releasing nitric oxide; while others were positive for a slew of canonical DA markers. Interestingly, we uncovered a seemingly novel population of DA neurons unique to the ENS which were ChAT/DAT-positive neurons and characterised by the expression of <em>Th</em>, <em>Grp</em>,<em>Calcb</em> and<em> Sst</em>. Given the clear heterogeneity of DAergic gut neurons, further investigation is warranted to define their functional signatures and discover any inherent vulnerabilities in disease. </p>
Datasets for "Time-evolving effective dispersion (TED) model for1 transport in porous media"
<p>Temporal evolution of <span class="math-tex">\(D^{\mathrm{eff}}_{\mathrm L}(t)\)</span> simulated by particle tracking. Ensemble of 100 realisations. var: <span class="math-tex">\(\sigma^2_f\)</span>.</p>
PqiC assembles an octameric toroid that stabilises the outer membrane interaction of a putative inter-membrane transport system.
<p>Neutron reflectometry data and custom models used to analyze this data for the article:</p> <p>"PqiC assembles an octameric toroid that stabilises the outer membrane interaction of a putative inter-membrane transport system."</p> <p>The NR data files and the custom models used to fit these using the RasCAL software are provided. </p>
OMaraLab/OCT1_2023: Structural Basis of Promiscuous Substrate Transport in Organic Cation Transporter 1 - MD DATA
<p>Molecular dynamics trajectory data relating to <strong>Structural Basis of Promiscuous Substrate Transport in Organic Cation Transporter 1</strong>, by Yi C. Zeng, Meghna Sobti, Ada Quinn, Nicola J. Smith, Simon H. J. Brown, Jamie I. Vandenberg, Renae M. Ryan, Megan L. O'Mara & Alastair G. Stewart.</p>
Data files for Axonal transport of autophagosomes is regulated by dynein activators JIP3/JIP4 and ARF/RAB GTPases
<p>Supporting data files for <strong>Axonal transport of autophagosomes is regulated by dynein activators JIP3/JIP4 and ARF/RAB GTPases</strong></p>
Airflow dynamics and aeolian sand transport across a beach-climbing dune-clifftop dune system
<p>This study presents an analysis of wind flow and sediment transport from the beach, up a 50m high, long (130m), steep (mean slope 26°) climbing dune and across a 1.5 m high max, 85 m long and 17.5 m wide clifftop dune 30km south of Dakhla in Morocco, NW Africa during highly oblique incident wind conditions. Multiple 2D sonic and cup/vane anemometers and sand traps were utilised for measurements. Flow steering was significant on the upper climbing dune. Flow deceleration occurred near the dune toe, and topographic forcing of flow was considerable on the upper slopes of the climbing dune. Near-surface flow steadiness (CV<sub>U1</sub>, CV<sub>U0.25</sub>) on the climbing dune straight slope segment was low and constant The distance upslope over which the airflow reached the speed comparable to that on the beach increases as the incident wind speed increases. The greatest flow acceleration and speed-up was observed at the cliff edge reaching 250% at 1m height and 220% at 0.25m height for the lowest incident wind speed class (4-5 m/s). The sand transport rate declined from the beach to the climbing dune toe and lower slope, but at the uppermost section of the climbing dune was 4 times higher than at the beach for the 7-8m/s incident wind speed. Sand in aeolian transport was generally finer than surface sand with mean grain size increasing up the slope. A comparison of the sand transport data collected with sand transport models, and the effects of slope on aeolian transport are also examined.</p>
Microscopic insights to spin transport–driven ultrafast magnetization dynamics in a Gd/Fe bilayer
<p>Datasets for the publication "Microscopic insights to spin transport–driven ultrafast magnetization dynamics in a Gd/Fe bilayer" published in Sci. Adv. 9,eade0286 (2023).</p>
Musée de La Cour d'Or - transport d'un tonneau
STÈLE FUNÉRAIRE D'UN COUPLE AVEC SCÈNE DE CARROYAGE Musée de la Cour d'Or à Metz (n° d'inventaire 75.38.34). hauteur 1098 cm, largeur 60 cm, épaisseur 53 cm Découvert lors de la construction du centre Saint Jacques en 1975 Source: Objaverse 1.0 / Sketchfab
Near InfraRed Fluorescence Using Indocyanine Green and Magnetic Resonance Lymphography of Lymphatic Transport
ClinicalTrials.gov study NCT04046146. IPD Sharing: YES. Countries: 1. Publications: 1.
Diet Treatment Glucose Transporter Type 1 Deficiency (G1D)
ClinicalTrials.gov study NCT03181399. IPD Sharing: NO. Countries: 1. Publications: 3.
Treatment Development for Glucose Transporter Type I Deficiency Syndrome (G1D)
ClinicalTrials.gov study NCT02018315. IPD Sharing: Not stated. Countries: 1. Publications: 18.
Advancing Understanding of Transportation Options
ClinicalTrials.gov study NCT04141891. IPD Sharing: NO. Countries: 1. Publications: 3.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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