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FIGURE 101 in The lace-sheet-weavers—a long story (Araneae: Psechridae: Psechrus)
FIGURE 101. Distribution of Psechrus argentatus in New Guinea and adjacent islands.
FIGURE 95 in The lace-sheet-weavers—a long story (Araneae: Psechridae: Psechrus)
FIGURE 95. Distribution of Psechrus himalayanus and P. marsyandi (both himalayanus-group).
FIGURE 97 in The lace-sheet-weavers—a long story (Araneae: Psechridae: Psechrus)
FIGURE 97. Distribution of Psechrus on Taiwan. All species belong to the sinensis-group.
Hurricane-associated population decrease in a Critically Endangered long-lived reptile
<p><span>Catastrophic events, like hurricanes, bring lethal conditions that can have population-altering effects. The threatened Caribbean dry forest occurs in a region known for its high-intensity hurricane seasons and high species endemism, highlighting the need to better understand hurricane impacts in combination with habitat fragmentation and loss. However, such studies remain rare, and for reptiles are mostly restricted to </span><em>Anolis</em><span>. Here we used single-season occupancy modeling to infer the impact of the intense 2017 Atlantic hurricane season on the critically endangered Lesser Antillean Iguana, </span><em>Iguana delicatissima</em><span>. We surveyed 30 transects across eight habitats on St. Eustatius during 2017–2019, which resulted in 344 individual surveys and 98 iguana observations. Analyses of abundance and site occupancy indicated both measures for 2018 and 2019 were strongly reduced compared to the pre-hurricane 2017 state. Iguanas at higher elevations were affected more profoundly, likely due to higher wind speeds, tree damage and extensive defoliation. Overall, our results indicate a decrease in population estimates (23.3-26.5%) and abundance (22-23.8%) for 2018 and 2019, and a 75% reduction in opportunistic sightings of tagged iguanas between 2017–2018. As only small and isolated </span><em>I</em><span>. </span><em>delicatissima</em><span> populations remain, our study further demonstrates their vulnerability to stochastic events. Considering the frequency and intensity of hurricanes are projected to increase, our results stress the urgent need for population-increasing conservation actions in order to secure the long-term survival of </span><em>I</em><span>. </span><em>delicatissima</em><span> throughout its range. Given the projected increase and poleward shift of hurricanes, our study provides important insights from a non-model species.</span></p>
Long evolutionary history of an emerging fungal pathogen of diverse tree species in eastern Asia, Australia, and the Pacific Islands
<p>Emerging plant pathogens have been increasing exponentially over the last century. To address this issue, it is critical to determine whether these pathogens are native to ecosystems or have been recently introduced. Understanding the ecological and evolutionary processes fostering emergence can help to manage their spread and predict epidemics/epiphytotics. Using restriction site-associated DNA sequencing data, we studied genetic relationships, pathways of spread, and evolutionary history of <em>Phellinus noxius</em>, an emerging root-rotting fungus of unknown origin, in eastern Asia, Australia, and the Pacific Islands. We analyzed patterns of genetic variation using Bayesian inference, maximum likelihood phylogeny, populations splits and mixtures measuring correlations in allele frequencies and genetic drift, and finally applied coalescent based theory using Approximate Bayesian computation (ABC) with supervised machine learning. Population structure analyses revealed five genetic groups with signatures of complex recent and ancient migration histories. The most probable scenario of ancient pathogen spread is movement from an unsampled population to Malaysia and the Pacific Islands, with subsequent spread to Taiwan and Australia. Furthermore, ABC analyses indicate <em>P. noxius</em> spread occurred thousands of generations ago, contradicting previous assumptions that this pathogen was recently introduced to multiple geographic regions. Our results suggest that recent emergence of <em>P. noxius</em>in eastern Asia, Australia, and the Pacific Islands is likely driven by anthropogenic and natural disturbances, such as deforestation, land-use change, severe weather events, and/or introduction of exotic plants. This study provides a novel example of applying genome-wide allele frequency data to unravel dynamics of pathogen emergence under changing ecosystem conditions.</p>
MeadoWatch: a long-term community-science database of wildflower phenology in Mount Rainier National Park
<p>We present a long-term and high-resolution phenological dataset from 17 wildflower species collected in Mt. Rainier National Park, as part of the MeadoWatch (MW) community science project. Since 2013, 500+ unique volunteers and scientists have gathered data on the timing of four key reproductive phenophases (budding, flowering, fruiting, and seeding) in 28 plots over two elevational gradients alongside popular park trails. Trained volunteers (87.2%) and UW scientists (12.8%) collected data 3-9 times/week during the growing season, using a standardized method. Taxonomic assessments were highly consistent between scientists and volunteers, with high accuracy and specificity across phenophases and species. Sensitivity, on the other hand, was lower than accuracy and specificity, suggesting that a few species might be challenging to reliably identify in community-science projects. Up to date, the MW database includes 42,000+ individual phenological observations from 17 species, between 2013 and 2019. However, MW is a living dataset that will be updated through continued contributions by volunteers, and made available for its use by the wider ecological community.</p>
Haplotype-phasing of long-read HiFi data to enhance structural variant detection through a Skip-Gram model
<p>Example dataset for DipPAV</p>
England and Wales Counts of Residents with Long-term Health Problems of Disabilities (Lower Layer Super Output Areas)
<p>Counts of residents with long-term health problems or disabilities in each lower layer super output area (LSOA) in England and Wales.</p> <p>Original source: Nomis LC3101EWLS Long term health problem or disability by sex by age (<a href="https://www.nomisweb.co.uk/census/2011/lc3101ewls">https://www.nomisweb.co.uk/census/2011/lc3101ewls</a>)</p> <p>Distributed under Open Government License v3.0: <a href="https://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/">https://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/</a></p> <p> </p> <p><strong>Description from Nomis (source)</strong></p> <p>Long term health problem or disability by sex by age</p> <p>This dataset provides 2011 Census estimates that classify usual residents in households in England and Wales by long-term health problem or disability, by sex and by age. The estimates are as at census day, 27 March 2011.</p> <p>Statistical Disclosure Control</p> <p>In order to protect against disclosure of personal information from the 2011 Census, there has been swapping of records in the Census database between different geographic areas, and so some counts will be affected. In the main, the greatest effects will be at the lowest geographies, since the record swapping is targeted towards those households with unusual characteristics in small areas.<br> <br> More details on the ONS Census disclosure control strategy may be found on the <a href="http://www.ons.gov.uk/ons/guide-method/census/2011/census-data/2011-census-prospectus/new-developments-for-2011-census-results/statistical-disclosure-control/index.html">Statistical Disclosure Control</a> page on the ONS web site.</p> <p>Table ID</p> <p>LC3101EWLS</p> <p>Source</p> <p><a href="https://www.nomisweb.co.uk/census/2011">Census 2011</a></p> <p>Website</p> <p><a href="http://www.ons.gov.uk/census">http://www.ons.gov.uk/census</a></p>
Supplementary material 1 from: Mojžišová M, Svobodová J, Kozubíková-Balcarová E, Štruncová E, Stift R, Bílý M, Kouba A, Petrusek A (2022) Long-term changes in the prevalence of the crayfish plague pathogen and its genotyping in invasive crayfish species in Czechia. NeoBiota 74: 105-127. https://doi.org/10.3897/neobiota.74.79087
Table S1
Distribution. Cat Ba I in Ha Long Bay, off N Vietnam. in Cercopithecidae
Distribution. Cat Ba I in Ha Long Bay, off N Vietnam.
Long-term outcomes and prognostic factors in kidney transplant recipients in Jakarta, Indonesia: a cohort study
<p><strong>Objectives </strong>To determine the long-term survival rates and prognostic factors in kidney transplant (KT) recipients in Jakarta, Indonesia.</p> <p><strong>Design</strong> Retrospective cohort study.</p> <p><strong>Setting</strong> A KT centre in Jakarta.</p> <p><strong>Participants</strong> We enrolled 754 consecutive adult recipients who underwent KT between 2010 and 2020.</p> <p><strong>Main outcome measures </strong>Rates of 10-year patient, all-cause and death-censored graft survival and their prognostic factors in KT recipients.</p> <p><strong>Results </strong>The 10-year patient survival, all-cause survival and death-censored graft survival rates of KT recipients were 74%, 68% and 81%, respectively. The prognostic factors for poor patient survival were a pretransplant dialysis duration>24 months (HR 1.64, 95% CI, 1.08 to 2.49; p=0.02), cardiovascular disease (HR 1.59, 95% CI, 1.11 to 2.31; p=0.01), delayed graft function (DGF) (HR 4.94, 95% CI, 2.76 to 8.82; p<0.001), post-transplant infection (HR 2.63, 95% CI, 1.56 to 4.43; p<0.001) and acute rejection (HR 2.49, 95% CI, 1.20 to 5.15; p=0.01). All-cause graft survival was prognosticated by a pretransplant dialysis duration>24 months (HR 1.74, 95% CI, 1.15 to 2.47; p=0.007), cardiovascular disease (HR 1.65, 95% CI, 1.18 to 2.33; p=0.004), DGF (HR 5.39, 95% CI, 3.13 to 9.28; p<0.001), post-transplant infection (HR 2.46, 95% CI, 1.05 to 4.02; p<0.001) and acute rejection (HR 4.18, 95% CI, 2.23 to 7.84; p<0.001). Factors associated with poor death-censored graft survival were a pretransplant dialysis duration >24 months (HR 2.19, 95% CI, 1.32 to 3.63; p=0.002), cardiovascular disease (HR 1.65, 95% CI, 1.02 to 2.68; p=0.04) and acute rejection (HR 5.52, 95% CI, 2.80 to 10.83; p<0.001).</p> <p><strong>Conclusions </strong>The survival rates of KT recipients are prognosticated by pretransplant dialysis duration, cardiovascular disease, DGF, post-transplant infection and acute rejection. Stricter eligibility criteria for recipients, more sensitive cross-match testing methods and better infection management strategies may be beneficial for improving the survival rates.</p>
Long et al. (2022) JGR submission - shale
<p>Long et al. (2022) JGR submission shale measurement data</p>
Supplementary material 1 from: Zhang J, Mikhailov KG, Koponen S, Long F, Yu H, Li S (2022) Forty-two years of scientific research on eight legs—celebrating the 60th birthday of Dr Yuri M. Marusik. ZooKeys 1100: 87-101. https://doi.org/10.3897/zookeys.1100.85374
Lists 1–3
Figure 1 from: Peruzzi L, Siniscalco C (2016) From Bullettino della Società Botanica Italiana to Italian Botanist, passing through Informatore Botanico Italiano. A 128 years-long story. Italian Botanist 1: 1-4. https://doi.org/10.3897/italianbotanist.1.8646
Figure 1 - Front covers of the first issue of the "Informatore Botanico Italiano", published in 1969 (A) and of the last issue of the "Informatore Botanico Italiano", published in 2015 (B).
Figures 1-6 from: Khalaim AI, Ruíz-Cancino E, Coronado-Blanco JM (2017) Labilochus brevipalpis, a new genus and species with extremely long mouthparts (Hymenoptera, Ichneumonidae, Tersilochinae) from Mexico. Journal of Hymenoptera Research 55: 121-127. https://doi.org/10.3897/jhr.55.11452
Figures 1-6 - Labilochus brevipalpis sp. n., holotype female (1, 2, 6) and paratype male (3–5). 1 antenna 2 head and mesosoma, lateral view 3 fore wing 4 head and mesosoma, dorsal view 5 mesopleuron 6 propodeum and base of metasoma, dorsal view.
Figure 1 from: Pyšková K, Storch D, Horáček I, Kauzál O, Pyšek P (2016) Golden jackal (Canis aureus) in the Czech Republic: the first record of a live animal and its long-term persistence in the colonized habitat. ZooKeys 641: 151-163. https://doi.org/10.3897/zookeys.641.10946
Figure 1 - Location of the study area in central Bohemia, western part of the Czech Republic (black rectangle). Previous records relating to dead animals (solid circles), and the first unconfirmed observation (empty circle) are also shown. The records are given by the year of observation, see details in Table 1.
Figure 2 from: Pyšková K, Storch D, Horáček I, Kauzál O, Pyšek P (2016) Golden jackal (Canis aureus) in the Czech Republic: the first record of a live animal and its long-term persistence in the colonized habitat. ZooKeys 641: 151-163. https://doi.org/10.3897/zookeys.641.10946
Figure 2 - Photographs of a golden jackal (Canis aureus) individual in the summer (A) and winter (B).
Figure 4 from: Pyšková K, Storch D, Horáček I, Kauzál O, Pyšek P (2016) Golden jackal (Canis aureus) in the Czech Republic: the first record of a live animal and its long-term persistence in the colonized habitat. ZooKeys 641: 151-163. https://doi.org/10.3897/zookeys.641.10946
Figure 4 - Distribution of the golden jackal (Canis aureus) individual's circadian activity over the study period. Records from the whole monitoring period were pooled and related to the time of the day in which the photographs were taken.
Figure 3 from: Pyšková K, Storch D, Horáček I, Kauzál O, Pyšek P (2016) Golden jackal (Canis aureus) in the Czech Republic: the first record of a live animal and its long-term persistence in the colonized habitat. ZooKeys 641: 151-163. https://doi.org/10.3897/zookeys.641.10946
Figure 3 - Distribution of the records of golden jackal. The numbers of photographs per week are given.
Figure 8 from: Peneva V, Elshishka M, Lazarova S (2012) Studies of the genus Enchodelus Thorne, 1939 (Nematoda, Nordiidae) from Arctic polar deserts. 1. Species with long odontostyle: E. makarovae sp. n. and E. groenlandicus (Ditlevsen, 1927) Thorne, 1939, with an identification key to the species of the E. macrodorus group. ZooKeys 212: 1-23. https://doi.org/10.3897/zookeys.212.3464
Figure 8 - Enchodelus groenlandicus. A–F Female A, C Vulval region and uterus B Vulval region D Anterior region, lateral view E Amphidial fovea F Anterior region, ventral view. Scale bars: A–F 50 µm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.