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12,662 results for “linking”
Differences in bee community composition between restored and remnant prairies are more strongly linked to forb community differences than landscape differences
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The nuclear import receptor Kapβ2 modifies neurotoxicity mediated by poly(GR) in C9orf72-linked ALS/FTD
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Data from: Predictive links between petal color and pigment quantities in natural Penstemon hybrids
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Data from: Quantifying and linking mechanism scenarios to invasive species impact
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Linking variation in water democracy to system performance on the human right to water
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Linking anatomical and histological traits of the digestive tract to resource consumption and assimilation of omnivorous tetra fishes
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Data from: Sociality of a threatened ‘solitary’ marsupial before and after population reinforcement: associations and links to breeding success
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Linking spatial variations in life-history traits to environmental conditions across American black bear populations
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Data from: Linking microenvironment modification to species interactions and demography in an alpine plant community
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temporalNEON: Repository containing raw and cleaned-up organismal data from the National Ecological Observatory Network (NEON) useful for evaluating the links between change in biodiversity and ecosystem stability
Organismal data include the following taxonomic groups: small mammals, fish, ground beetles, and aquatic macroinvertebrates. Data were retrieved from the National Ecological Observatory Network (NEON) database in November 2020. We submit both raw data retrieved from NEON as .rds files, R code used to process these data, as well as processed data as .csv files.
Linking Precipitation and C3 - C4 Plant Production to Resource Dynamics in Higher Trophic Level Consumers: Lizard Data (2005-2006)
In many ecosystems, seasonal shifts in temperature and precipitation induce pulses of primary productivity that vary in phenology, abundance and nutritional quality. Â Variation in these resource pulses could strongly influence community composition and ecosystem function, because these pervasive bottom-up forces play a primary role in determining the biomass, life cycles and interactions of organisms across trophic levels. Â The focus of this research is to understand how consumers across trophic levels alter resource use and assimilation over seasonal and inter-annual timescales in response to climatically driven changes in pulses of primary productivity. We measured the carbon isotope ratios (d13C) of plant, arthropod, and lizard tissues in the northern Chihuahuan Desert to quantify the relative importance of primary production from plants using C3 and C4 photosynthesis for consumers. Â Summer monsoonal rains on the Sevilleta LTER in New Mexico support a pulse of C4 plant production that have tissue d13C values distinct from C3 plants. Â During a year when precipitation patterns were relatively normal, d13C measurements showed that consumers used and assimilated significantly more C4 derived carbon over the course of a summer; tracking the seasonal increase in abundance of C4 plants. Â In the following spring, after a failure in winter precipitation and the associated failure of spring C3 plant growth, consumers showed elevated assimilation of C4 derived carbon relative to a normal rainfall regime. These findings provide insight into how climate, pulsed resources and temporal trophic dynamics may interact to shape semi-arid grasslands such as the Chihuahuan Desert in the present and future.
Linking Precipitation and C3 - C4 Plant Production to Resource Dynamics in Higher Trophic Level Consumers: Insect Data (2005-2006)
In many ecosystems, seasonal shifts in temperature and precipitation induce pulses of primary productivity that vary in phenology, abundance and nutritional quality. Â Variation in these resource pulses could strongly influence community composition and ecosystem function, because these pervasive bottom-up forces play a primary role in determining the biomass, life cycles and interactions of organisms across trophic levels. Â The focus of this research is to understand how consumers across trophic levels alter resource use and assimilation over seasonal and inter-annual timescales in response to climatically driven changes in pulses of primary productivity. We measured the carbon isotope ratios (d13C) of plant, arthropod, and lizard tissues in the northern Chihuahuan Desert to quantify the relative importance of primary production from plants using C3 and C4 photosynthesis for consumers. Â Summer monsoonal rains on the Sevilleta LTER in New Mexico support a pulse of C4 plant production that have tissue d13C values distinct from C3 plants. Â During a year when precipitation patterns were relatively normal, d13C measurements showed that consumers used and assimilated significantly more C4 derived carbon over the course of a summer; tracking the seasonal increase in abundance of C4 plants. Â In the following spring, after a failure in winter precipitation and the associated failure of spring C3 plant growth, consumers showed elevated assimilation of C4 derived carbon relative to a normal rainfall regime. These findings provide insight into how climate, pulsed resources and temporal trophic dynamics may interact to shape semi-arid grasslands such as the Chihuahuan Desert in the present and future.
High-density Chemical Cross-linking for Modeling Protein Interactions
<p>Supporting parameters, IMP code and data for Mintseris & Gygi "High-density Chemical Cross-linking for Modeling Protein Interactions" <em>PNAS</em></p> <p><strong>Parameter Files</strong></p> <p>These parameter files were used for running PIXL to produce the data described in the paper</p> <p><strong>Fasta Sequence Databases</strong></p> <p>These sequence databases were used for running PIXL to produce the data described in the paper</p> <p><strong>IMP</strong></p> <p>Code, intermediate data, and final localization densities for IMP proteasome modeling as described in the paper See IMP directory README</p>
Survey data linked to the article "The role of wildlife in driving ecotourism and visitor satisfaction on the Osa Peninsula of Costa Rica: The Lapa Rios case".
<p>Questionnaire responses obtained from 46 visitors of Lapa Rios Ecolodge in the Osa Peninsula, Costa Rica, from Aug 2017 to Aug 2018; also included question key.</p>
CROP: linking code reviews to source code changes
<p>he Code Review Open Platform, a.k.a. CROP, is an open-source dataset of code review data. CROP collects code review information from open-source software systems and links this data to complete versions of the code base for each of these systems. CROP was first designed by <a href="https://mhepaixao.github.io/homepage/">Matheus Paixao</a> as part of his PhD thesis in the <a href="http://crest.cs.ucl.ac.uk/about/">CREST Centre</a> at University College London. <a href="http://www0.cs.ucl.ac.uk/staff/j.krinke/">Dr. Jens Krinke</a>, <a href="https://donggyun.com/">Donggyun Han</a> and <a href="http://www0.cs.ucl.ac.uk/staff/M.Harman/">Prof. Mark Harman</a> have also contributed for the first incarnation of CROP.</p> <p> </p> <p>CROP collects code review information from open-source software systems and links this data to complete versions of the code base for each of these systems.</p> <p> </p> <p>Given a certain software system, CROP contains code review data and versions of the code base for each revision ever submitted for review, including intermediary revisions before merging and revisions that were even abandoned by the system's developers. Each version of the system represents a complete snapshot of the system's code base, in a way that each revision of the system is fully buildable, compilable and testable.</p> <p> </p> <p>By leveraging the data contained in CROP, software engineering researchers and practitioners can perform empirical studies to assess how effective the code review process is for different aspects of software development. Since CROP provides complete snapshots of the software system, these experiments can be enhanced by using a wide range of approaches for static and dynamic analysis.</p> <p> </p> <p>Moreover, during code review, developers are constantly providing reasoning and rationale for the changes they make in the system, both when they submit code for review and when they inspect code from their peers. Thus, the data contained in CROP is a valuable source of knowledge regarding motivation for and explanation of software changes.</p> <p> </p> <p>For more information on the CROP dataset, including its structure, technical details, publication history and so on, please visit its official website in <a href="https://crop-repo.github.io/">crop-repo.github.io</a>.</p>
FoodOntoMap version 2: Linking Food Concepts across different Food Ontologies
<p>A dataset providing food concept normalization using different food ontologies. There are eight data sets which describe the unique food concepts from each ontology, and one main file which provides the mapping between the different ontologies. All files are in two formats (.csv, .xlsx).</p> <p>The prefixes for each dataset are as follows:</p> <ol> <li>"A" - Hansard Corpus</li> <li>"B" - FOODON</li> <li>"C" - SNOMEDCT</li> <li>"D" - OF</li> <li>"E" - RCD</li> <li>"F" - MESH</li> <li>"G" - SNMI</li> <li>"H" - NDDF<br> </li> </ol>
Annotated genes harboring major effect markers (R2 ≥ 15%). Highlighted in green are genes annotated from Rhodes et al. 2014,2017, in orange genes annotated as similar to Peroxidase, in yellow new annotations from sorghum genome in Atlas. In the first three columns start and stop position on the sorghum genome and transcript name, followed by the nearest marker name and the distance of the gene from the nearest marker, then a column where are shown the GWAS methods and target traits for which the linked SNP was significant, the last column shows the category of the genes.
<p><strong>We conducted a comprehensive genomics study to map genomic loci determining the production of antioxidants in sorghum grains. Encouraging results were obtained and published in peer-reviewed article with impact factor (https://doi.org/10.1371/journal.pone.0225979). Annotated genes harboring major effect markers (R<sup>2</sup> ≥ 15%) were identified and will be of worldwide interest. </strong></p>
SKR and QBER calculations for a BB84-QKD link multiplexed with intense classical signal in a WSS-based node
<p>This set will comprise a set of theoretical calculations on the effect of the filtering parameters of the WSS-based node on the quantum layer performance. In more detail, this data set will consist of the calculated QBER and SKR for the phase coding BB84 protocol by considering bandwidth and shape parameters of channel bands for Liquid Crystal on Silicon (LCoS)-based WSS nodes. Critical system requirements such as insertion loss and center frequency drifts are also considered. The obtained ultra-high sensitivity of QKD link performance on the filtering parameters of the WSS-based node, as confirmed by the generated data, can be useful for monitoring and control purposes at classical networks exploiting cascaded ROADMs.</p>
Semantic links between selected CSV datasets harvested by the European Data Portal and the DBpedia knowledge graph
<p>These dataset contains the results of the interlinking process between selected csv datasets harvested by the European DAta Portal and the DBpedia knowledge graph. </p> <p>We aim at answering the following questions:<br> What are the more popular column types? This will provide hindsight about what the datasets hold and how they can be joined. It will also provide hindsight on what specific linking schemes could be applied in future elements.<br> What datasets have columns of the same type? This will suggest datasets that may be similar or related.<br> What entities appear in most datasets (co-referent entities)? This will suggest entities for which more data is published.<br> What datasets share a particular entity? This will suggest datasets that may be joined, or are related through that particular entity</p> <p>Results are provided as augmented tables, that contain the columns of the original csv, plus a metadata file in JSON-LD format. The metadata files can be loaded in an RDF-store and queried.</p> <p>Refer to the accompanying report of activities for more details on the methodolog and how to query the dataset.</p> <p><br> </p>
Oxygen vacancy substitution linked to ferric iron in bridgmanite at 27 GPa
<p>1.1.1 The article file in gold open access publication and supplementary information</p> <p>1.1.2 Data of electron microprobe analysis, Mossbauer spectrscopy and power X-ray diffraction are added</p> <p>1.1.3 SEM images are added</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.