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FIGURES 113–118 in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 113–118. Male genitalia of Schaffnerocoris spp. S. fuscotibialis, n. sp.: 113, right paramere. 114, left paramere. S. pallipes, n. sp.: 115, left paramere. 116, right paramere. S. tibiopallidus, n. sp.: 117, left paramere. 118, right paramere.
FIGURES 119–128 in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 119–128. Male genital tubercles of Agaveocoris spp. 119, A. agavis. 120, A. barberi. 121, A. barrerai, n. sp. 122, A. bimaculatus, n. sp. 123, A. dimidiatus, n. sp. 124, A. distanti. 125, A. roseus, n. sp. 126, A. rostratus, n. sp. 127, A. schaffneri, n. sp. 128, A. scutellatus, n. sp.
FIGURES 94–103 in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 94–103. Male genitalia of Agaveocoris and Laterospinocoris spp. A. schaffneri, n. sp.: 94, endosoma. 95, right paramere. 96, left paramere. A. scutellatus, n. sp.: 97, endosoma. 98, left paramere. 99, right paramere. L. cyaneipennis: 100, right paramere. 101, left paramere. L. mexicanus, n. sp.: 102, left paramere. 103, right paramere.
FIGURES 104–99 in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 104–99. Male genitalia of Nigrotomocoris spp. N. keltoni, n. sp.: 104, endosoma. 105, left paramere. 106, right paramere. N. longirostris, n. sp. 107, left paramere. 108, right paramere. N. nigrus: 109, left paramere. 110, right paramere. N. tibiopallidus: 111, left paramere. 112, right paramere.
FIGURES 80–93 in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 80–93. Male genitalia of Agaveocoris spp. A. dimidiata, n. sp.: 80, endosoma. 81, left paramere. 82, right paramere. A. distanti, n. sp.: 83, endosoma. 84, left paramere. 85, right paramere. A. marginalis, n. sp.: 86, endosoma. 87, left paramere. 88, right paramere. A. roseus, n. sp.: 89, right paramere. 90, left paramere. A. rostratus, n. sp.: 91, endosoma. 92, left paramere. 93, right paramere.
FIGURES 67–77 in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 67–77. Male genitalia of Caulotops and Agaveocoris spp. Caulotops platensis: 67, genital capsule. 68, left paramere. 69, right paramere. Agaveocoris agavis: 70, endosoma. 71, left paramere. 72, right paramere. A. barberi: 73, left paramere. 74, right paramere. A. barrerai, n. sp.: 75, left paramere. 76, right paramere. A. bimaculatus, n. sp.: 77, endosoma. 78, left paramere. 79, right paramere.
FIGURES 43–54. Laterospinocoris and Nigrotomocoris spp. 43, L in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 43–54. Laterospinocoris and Nigrotomocoris spp. 43, L. cyaneipennis (Reuter), male (dorsal aspect). 44, L. cyaneipennis, male (lateral aspect). 45, L. cyaneipennis, female (dorsal aspect). 46, L. mexicanus, n. sp., male (dorsal aspect). 47, L. mexicanus, n. sp., male (lateral aspect). 48, L. mexicanus, n. sp., female (dorsal aspect). 49, N. keltoni, n. sp., male (dorsal aspect). 50, N. keltoni, n. sp., male (lateral aspect). 51, N. keltoni, n. sp., female (dorsal aspect). 52, N. longirostris, n. sp., male (dorsal aspect). 53, N. longirostris, n. sp., male (lateral aspect). 54, N. longirostris, n. sp., female (dorsal aspect).
FIGURES 32–42. Agaveocoris spp. 32, A. roseus, n in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 32–42. Agaveocoris spp. 32, A. roseus, n. sp., male (dorsal aspect). 33, A. roseus, n. sp., male (lateral aspect). 34, A. roseus, female (dorsal aspect). 35, A. rostratus, n. sp., male (dorsal aspect). 36, A. rostratus, n. sp., male (lateral aspect). 37, A. rostratus, n. sp., female (dorsal aspect). 38, A. schaffneri, n. sp., male (dorsal aspect). 39, A. schaffneri, n. sp., male (lateral aspect). 40, A. schaffneri n. sp., female (dorsal aspect). 41, A. scutellatus n. sp., male (dorsal aspect). 42, A. scutellatus, n. sp., female (dorsal aspect).
FIGURE 1 in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURE 1. Strict consensus tree of three equally parsimonious New Technology, 1000 Random Addition Search trees of 143 steps.
FIGURES 21–31. Agaveocoris spp. 21, A. dimidiatus, n in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 21–31. Agaveocoris spp. 21, A. dimidiatus, n. sp., male (dorsal aspect). 22, A. dimidiatus, n. sp., male (lateral aspect). 23, A. dimidiatus, n. sp., female (dorsal aspect). 24, A. distanti (Reuter), male (brown color form, dorsal aspect). 25, A. distanti (Reuter), male (brown color form, lateral aspect). 26, A. distanti, female (brown color form, dorsal aspect). 27, A. distanti, male (reddish-orange color form, dorsal aspect). 28, A. distanti, female (reddish-orange color form, dorsal aspect). 29, A. marginalis, n. sp., male (dorsal aspect). 30, A. marginalis, n. sp., male (lateral aspect). 31, A. roseus, n. sp., female (dorsal aspect).
FIGURES 2–7 in Revision and Phylogeny of the Eccritotarsine Plant Bug Genus Caulotops Bergroth, with Descriptions of Four New Genera and 14 New Species (Hemiptera Heteroptera: Miridae: Bryocorinae) Associated with Agave (Agavoideae Asparagaceae) and Related Plant Genera
FIGURES 2–7. Scanning electron microscope (SEM) micrographs of Agaveocoris agavis. 2, head and pronotum, dorsal aspect. 3, head and pronotum, lateral aspect. 4, head, frontal aspect. 5, metathoracic scent gland opening and ostiolar evaporative area. 6, genital capsule, showing right and left paramere and tubercle, caudal aspect. 7, genital capsule, showing right paramere and tubercle, lateral aspect.
III Average nucleotide distances (%) based on the Kimura 2-parameter (K2P) model between Aselliscus spp., and associated outgroups based on complete mitochondrial Cytb (1,140 bp, below the diagonal) and COI (657 bp, above the diagonal) gene sequences in Description of a new species of the genus Aselliscus (Chiroptera, Hipposideridae) from Vietnam
III Average nucleotide distances (%) based on the Kimura 2-parameter (K2P) model between Aselliscus spp., and associated outgroups based on complete mitochondrial Cytb (1,140 bp, below the diagonal) and COI (657 bp, above the diagonal) gene sequences
Supplementary dataset to "A new genome allows the identification of genes associated with natural variation in aluminium tolerance in Brachiaria grasses"
<p>SUPPLEMENTARY DATASETS TO:</p> <p><strong>A new genome allows the identification of genes associated with natural variation in aluminium tolerance in <em>Brachiaria </em>grasses</strong></p> <ul> <li><strong>Supplementary File 1:</strong> Cumulative root length (RL), root biomass (RB), and root tip diameter (RD) during Al<sup>3+</sup> stress (A) and control (C) conditions, and the ratio (R) between stress and control values, in the interspecific progeny between CIAT 606 and BXR 44-02.</li> <li><strong>Supplementary File 2: </strong>Gene annotation in GFF3 format.</li> <li><strong>Supplementary File 3: </strong>Functional annotation of the genes, including GO terms and homologous proteins in NCBI nr database, Uniprot, <em>A. thaliana</em>, rice, <em>P. halli</em>, <em>S. italica</em> and <em>S. viridis</em><em>.</em></li> <li><strong>Supplementary File 4: </strong>Assignment of the proteins in the Poaceae family to eggNOG orthologous groups to identify shared clusters of proteins among these species.</li> <li><strong>Supplementary File 5:</strong> Anchoring 21,145 <em>Brachiaria ruziziensis</em> scaffolds longer than 10 Kbp or with at least one annotated gene (533.9 Mbp) in <em>S. italica </em>nine chromosomes.</li> <li><strong>Supplementary File 6:</strong> Chromosomal position of the 41,974 transcripts in <em>Brachiaria ruziziensis</em> based on the synteny with the <em>S. italica</em> genome. In BED5 format.</li> <li><strong>Supplementary File 7: </strong>Genetic map with 4,427 markers placed at LOD 10 in 18 linkage groups, including the position of each marker in the genetic map and genome assembly.</li> <li><strong>Supplementary File 8:</strong> Functional annotation of the 84 DE genes within QTLs.</li> <li><strong>Supplementary File 9:</strong> Enrichment analysis of the GO terms (full ontology) over-represented among DE genes in each species with the biological processes (BP) and molecular functions (MF).</li> <li><strong>Supplementary File 10:</strong> Enrichment analysis of the GO SLIM terms (reduced ontology) over-represented among DE genes in each species with the biological processes (BP) and molecular functions (MF).</li> </ul> <p> </p> <ul> </ul> <p>Margaret Worthington<sup>1#</sup>, Juan Guillermo Perez<sup>1</sup>, Saule Mussurova<sup>2</sup>, Alexander Silva-Cordoba<sup>1</sup>, Valheria Castiblanco<sup>1</sup>, Juan Andres Cardoso Arango<sup>1</sup>, Charlotte Jones<sup>3</sup>, Narcis Fernandez-Fuentes<sup>3</sup>, Leif Skot<sup>3</sup>, Sarah Dyer<sup>2&</sup>, Joe Tohme<sup>1</sup>, Federica Di Palma<sup>2</sup>, Jacobo Arango<sup>1</sup>, Ian Armstead<sup>3</sup>, Jose J De Vega<sup>2</sup></p> <p> </p> <p>1. International Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.</p> <p>2. Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.</p> <p>3. Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, UK.</p> <p> </p> <p> </p>
FIGURE 7 in Two new species of Cryptopontius Giesbrecht, 1899 (Copepoda, Siphonostomatoida Artotrogidae) associated with invertebrates from Northeastern Brazil
FIGURE 7. Cryptopontius pentadikos sp. nov. male (holotype: UFBA 3332). A, leg 1; B, leg 2; C, leg 3; D, leg 4; E, leg 5. Scale bars: A–D = 50 µm; E = 25 µm.
Data from: De novo gene birth, horizontal gene transfer and gene duplication as sources of new gene families associated with the origin of a symbiosis in Amanita
<p>By introducing novel capacities and functions, new genes and gene families may play a crucial role in ecological transitions. Mechanisms generating new gene families include <i>de novo</i> gene birth, horizontal gene transfer and neofunctionalization following a duplication event. The ectomycorrhizal (ECM) symbiosis is a ubiquitous mutualism and the association has evolved repeatedly and independently many times among the fungi, but the molecular dynamics enabling its emergence remain elusive. We developed a phylogenetic workflow to first understand if gene families unique to ECM <i>Amanita</i> fungi and absent from closely related asymbiotic species are functionally relevant to the symbiosis, and then to systematically infer their origins. We identified 109 gene families unique to ECM <i>Amanita </i>species. Genes belonging to unique gene families are under strong purifying selection and are upregulated during symbiosis, compared to genes of conserved or orphan gene families. The origins of seven of the unique gene families are strongly supported as either <i>de novo</i> gene birth (two gene families), horizontal gene transfer (four), and gene duplication (one). An additional 34 families appear new because of their selective retention within symbiotic species. Among the 109 unique gene families, the most upregulated gene in symbiotic cultures encodes an ACC deaminase, an enzyme capable of downregulating the synthesis of the plant hormone ethylene. Ethylene is a common negative regulator of plant-microbial mutualisms.</p>
Supplementary material 1 from: Abram PK, McPherson AE, Kula R, Hueppelsheuser T, Thiessen J, Perlman SJ, Curtis CI, Fraser JL, Tam J, Carrillo J, Gates M, Scheffer S, Lewis M, Buffington M (2020) New records of Leptopilina, Ganaspis, and Asobara species associated with Drosophila suzukii in North America, including detections of L. japonica and G. brasiliensis. Journal of Hymenoptera Research 78: 1-17. https://doi.org/10.3897/jhr.78.55026
Collection information for specimens reported in: New records of Leptopilina, Ganaspis, and Asobara species associated with Drosophila suzukii in North America, including detections of L. japonica and G. brasiliensis
FIGURES 40–45 in Two new genera of Nearctic Chamaemyiidae (Diptera: Lauxanioidea) associated with Cinara aphids (Hemiptera: Aphididae) on Pinus
FIGURES 40–45. Vitaleucopis scopulus sp. nov., holotype ♂, genitalia. 40. Epandrial complex, lateral view. 41. Epandrial complex, posterior view. 42. Epandrial complex, posterior view tilted ventrally (showing dorsum of epandrium). 43. Hypandrial complex, dorsal view (phallus reflexed downward). 44. Phallic complex, lateral view. 45. Phallus, dorsal view. Abbreviations: c = cercus, e = epandrium, h = hypandrium, pa = phallapodeme, pg = postgonite, ph = phallus, pr = pregonite, ss = surstylus. Scale bar = 0.1 mm.
FIGURES 46–47 in Two new genera of Nearctic Chamaemyiidae (Diptera: Lauxanioidea) associated with Cinara aphids (Hemiptera: Aphididae) on Pinus
FIGURES 46–47. Vitaleucopis (undescribed species from La Crescenta, California), ♀. 46. Head and thorax, anterolateral view. 47. Abdomen, dorsal view.
FIGURES 35–39 in Two new genera of Nearctic Chamaemyiidae (Diptera: Lauxanioidea) associated with Cinara aphids (Hemiptera: Aphididae) on Pinus
FIGURES 35–39. Vitaleucopis scopulus sp. nov., holotype ♂. 35. Habitus, lateral view. 36. Head and thorax, dorsal view. 37. Head, dorsal view. 38. Head, dorsal oblique view. 39. Abdomen, dorsal view.
FIGURES 32–34 in Two new genera of Nearctic Chamaemyiidae (Diptera: Lauxanioidea) associated with Cinara aphids (Hemiptera: Aphididae) on Pinus
FIGURES 32–34. Vitaleucopis nidolkah sp. nov., paratype ♂, puparium. 32. Habitus, dorsal view. 33. Head segments, lateral view. 34. Posterior spiracles, dorsal view.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.