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Figure 45 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 45 - Diagnostic features and terminalia of Minyomerus griseus [JF2015] A aedeagus, dorsal view B aedeagus, lateral view C labial prementum, ventral view D spermatheca E lamina of sternum VIII.
Figure 6 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 6 - Diagnostic features and terminalia of Minyomerus imberbus [JF2015], female A ventral habitus B spermatheca C lamina of sternum VIII.
Figure 50 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 50 - Combined occurrence record and Maxent habitat modeling map for si× species of Minyomerus [JF2015], as indicated in the legend. Increasing saturation indicates an increased probability of successful prediction of presence. Colored circles indicate georeferenced localities for a given species. For some species, only locality data are shown (see Methods section for further detail details).
Figure 51 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 51 - Combined occurrence record and Maxent habitat modeling map for five species of Minyomerus [JF2015], as indicated in the legend. See also Fig. 50.
Figure 22 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 22 - Diagnostic features and terminalia of Minyomerus microps [JF2015] A labial prementum, ventral view B lamina of sternum VIII C spermatheca.
Figure 24 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 24 - Diagnostic features and terminalia of Minyomerus aeriballux [JF2015] A aedeagus, dorsal view B aedeagus, lateral view C apical sclerite of aedeagal flagellum D labial prementum, ventral view E lamina of sternum VIII F spermatheca.
Figure 21 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 21 - Habitus of female holotype of Minyomerus innocuus [JF2015], located in the Harvard University Museum of Comparative Zoology, Cambridge, Massachusetts, USA. Images courtesy of MCZ Type Database, http//insects.oeb.harvard.edu/mcz/Species_record.php?id=4892
Figure 18 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 18 - Diagnostic features and terminalia of Minyomerus languidus [JF2015] A labial prementum, ventral view B lamina of sternum VIII C spermatheca.
Figure 13 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 13 - Diagnostic features and terminalia of Minyomerus conicollis [JF2015] A labial prementum, ventral view B lamina of sternum VIII.
Figure 2 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 2 - Arrangement of input visualizations 10–14 (1948–2015) representing relevant prior taxonomies for the Minyomerus [JF2015] revision. See Fig. 1 and Suppl. material 1 for further explanation. A sec. Blackwelder & Blackwelder (1948) B sec. Sleeper (1960) C sec. Kissinger (1964) D sec. O'Brien & Horn (1876) E sec. Jansen & Franz (2015).
Figure 20 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 20 - Habitus of female holotype of Minyomerus microps [JF2015], located in the Naturhistorika Riksmuseet, Stockholm, Sweden. Images courtesy of Jens Prena.
Figure 17 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 17 - Habitus of female holotype of Minyomerus languidus [JF2015], located in the Harvard University Museum of Comparative Zoology, Cambridge, Massachusetts, USA. Images courtesy of MCZ Type Database, http://insects.oeb.harvard.edu/mcz/Species_record.php?id=286
Figure 10 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 10 - Mouthparts of Minyomerus laticeps [JF2015] A labial prementum, ventral view B left maxilla, ventral view.
Figure 1 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 1 - Arrangement of input visualizations 1–9 (1831–1920) representing relevant prior Taxonomies (concepts and parent/child is_a relationships) for the Minyomerus [JF2015] revision, generated with the Euler/× toolkit for concept taxonomy alignment. Annotation and representation conventions are in accordance with Franz et al. (2015a, 2015b). In particular, taxonomic concept labels such as Thylacites microps sec. Say (1831) are abbreviated as "1831.Thylacites_microps". The succeeding taxonomies are represented cumulatively, i.e., all concepts explicitly and implicitly endorsed at the time of publication are represented. For further detail see Suppl. material 1. A sec. Say (1831) B sec. Boheman (1833) C sec. LeConte (1859) D sec. Horn (1876) E sec. Casey (1888) F sec. Sharp (1891) G sec. Pierce (1909) H sec. Pierce (1913) I sec. Green (1920).
Figure 15 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 15 - Terminalia of Minyomerus conicollis [JF2015], male A aedeagus, dorsal view B aedeagus, lateral view C spiculum gastrale D aedeagal tegmen E sternum VIII.
Figure 14 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 14 - Terminalia of Minyomerus conicollis [JF2015], female A ovipositor, apex, dorsal view B ovipositor, dorsal view C sternum VIII D spermatheca.
Figure 11 from: Jansen MA, Franz NM (2015) Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments. ZooKeys 528: 1-133. https://doi.org/10.3897/zookeys.528.6001
Figure 11 - Terminalia of Minyomerus laticeps [JF2015], female A spermatheca B lamina of sternum VIII C aedeagus, lateral view D aedeagus, dorsal view.
Transcriptome profiling of derived-hepatocyte progenitors from human iPSCs with nanoCAGE - part1 - genomic alignments (hg19 + hg38)
<p>This repository contains genomic alignments (BED files) of paired-end nanoCAGE sequencing data (CAGEscan data) collected from Illumina MiSeq run IDs "170630_M00528_0292_000000000-B9JY8" (aka "NC_LIMMS") and "180221_M00528_0334_000000000-B6PJM" (aka "NC_LIMMS2"). FASTQ files were processed with the MOIRAI pipeline OP-WORKFLOW-CAGEscan-short-reads-v2.1 (Hasegawa et al. BMC Bioinformatics 2014 May 16;15:144. doi: 10.1186/1471-2105-15-144.). Filtered pairs of reads were aligned on the human genome assemblies hg19 and hg38. See tables below for a detailed description of the samples contained in each nanoCAGE library, including barcodes and index sequences used for the demultiplexing of sequencing reads. Corresponding raw sequencing data files (FASTQ files) were deposited at Zenodo under the following Digital Object Identifier: 10.5281/zenodo.1014009.</p> <p> </p> <p><em><strong>"170630_M00528_0292_000000000-B9JY8" ("NC_LIMMS") :</strong></em></p> <p><strong>ID Sample_name Barcode_number Barcode_sequence Index_sequence</strong></p> <p>1 iPSC_control_rep1 4 ACAGAT NNNNNNNN</p> <p>2 iPSC_control_rep2 24 ATCGTG NNNNNNNN</p> <p>3 iPSC_control_rep3 31 CACGAT NNNNNNNN</p> <p>4 S3P1_OK_rep1 36 CACTGA NNNNNNNN</p> <p>5 S3P1_OK_rep2 46 CTGACG NNNNNNNN</p> <p>6 S3P1_OK_rep3 63 GAGTGA NNNNNNNN</p> <p>7 S4P1_OK_rep1 79 GTATAC NNNNNNNN</p> <p>8 S4P1_OK_rep2 92 TCGAGC NNNNNNNN</p> <p>9 S4P1_OK_rep3 9 ACATGA NNNNNNNN</p> <p>10 S4P2_OK_rep1 21 ATCATA NNNNNNNN</p> <p>11 S4P2_OK_rep2 33 CACGTG NNNNNNNN</p> <p>12 S4P2_OK_rep3 45 CGATGA NNNNNNNN</p> <p>13 S1P1_rep1 57 GAGATA NNNNNNNN</p> <p>14 S1P1_rep2 69 GCTCTC NNNNNNNN</p> <p>15 S1P1_rep3 81 GTATGA NNNNNNNN</p> <p>16 S3P1_FAILED_rep1 93 TCGATA NNNNNNNN</p> <p>17 S3P1_FAILED_rep2 11 AGTAGC NNNNNNNN</p> <p>18 S3P1_FAILED_rep3 23 ATCGCA NNNNNNNN</p> <p>19 S4P1_FAILED_rep1 35 CACTCT NNNNNNNN</p> <p>20 S4P1_FAILED_rep2 47 CTGAGC NNNNNNNN</p> <p>21 S4P1_FAILED_rep3 59 GAGCGT NNNNNNNN</p> <p>22 S4P2_FAILED_rep1 71 GCTGCA NNNNNNNN</p> <p>23 S4P2_FAILED_rep2 83 TATAGC NNNNNNNN</p> <p>24 S4P2_FAILED_rep3 95 TCGCGT NNNNNNNN</p> <p> </p> <p><em><strong>"180221_M00528_0334_000000000-B6PJM" ("NC_LIMMS2"):</strong></em></p> <p><strong>ID Sample_name Barcode_number Barcode_sequence Index_sequence</strong></p> <p>25 PETRI_rep1 04 ACAGAT NNNNNNNN</p> <p>26 PETRI_rep2 24 ATCGTG NNNNNNNN</p> <p>27 PETRI_rep3 31 CACGAT NNNNNNNN</p> <p>28 BIOCHIP_E_rep1 6 CACTGA NNNNNNNN</p> <p>29 BIOCHIP_M_rep1 46 CTGACG NNNNNNNN</p> <p>30 BIOCHIP_S_rep1 63 GAGTGA NNNNNNNN</p> <p>31 BIOCHIP_E_rep2 79 GTATAC NNNNNNNN</p> <p>32 BIOCHIP_M_rep2 92 TCGAGC NNNNNNNN</p> <p>33 BIOCHIP_S_rep2 09 ACATGA NNNNNNNN</p> <p>34 BIOCHIP_E_rep3 21 ATCATA NNNNNNNN</p> <p>35 BIOCHIP_M_rep3 33 CACGTG NNNNNNNN</p> <p>36 BIOCHIP_S_rep3 45 CGATGA NNNNNNNN</p> <p>37 HEPATOCYTES_rep1 57 GAGATA NNNNNNNN</p> <p>38 HEPATOCYTES_rep2 69 GCTCTC NNNNNNNN</p> <p>39 iPSC_control_rep1-2 81 GTATGA NNNNNNNN</p> <p>40 BIOCHIP_E_rep2-2 93 TCGATA NNNNNNNN</p> <p>41 BIOCHIP_M_rep1-2 11 AGTAGC NNNNNNNN</p> <p>42 BIOCHIP_S_rep2-2 23 ATCGCA NNNNNNNN</p> <p> </p>
Pain profile during orthodontic levelling and alignment with fixed appliances reported in randomized trials: a systematic review with meta-analyses
<p>Dataset for all analyses</p>
Alignment bHLH domains
<p>alignement used to run the phylogenetic analysis concerning bHLH transcription factors of O. minuta</p>
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