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6,452 results for “Application”
Data for 'Y2Ti2O5S2 – a promising n-type oxysulphide for thermoelectric applications'
<p>The optimised Y2Ti2O5S2 structures used in the calculations, the AMSET inputs and outputs, including both n- and p-type transport data, and lattice thermal conductivity data.</p>
Fine-mapping gene-based associations via knockoff analysis of biobank-scale data with applications to UK Biobank
<p>The results of BIGKnock analyses of manuscript ''Fine-mapping gene-based associations via knockoff analysis of biobank-scale data with applications to UK Biobank''</p>
Application of inverse theory for high spatial resolution reconstructions of thermospheric vector wind fields from Doppler shifts measured by a ground-based network of all-sky Fabry-Perot interferometers
<p>Several types of all-sky viewing Fabry-Perot Interferometers (FPI) have been developed since the 1990s for ground-based remote sensing of thermospheric winds. The Scanning Doppler Imager (SDI) is one such instrument, which provides temporally simultaneous line-of-sight observations from hundreds of independent look directions per instrument exposure. A geographically distributed network of such instruments increases spatial coverage and, at many locations, also provides overlapping observations along multiple independent lines-of-sight. Together, these characteristics significantly increase the density and fidelity that is possible for reconstructed thermospheric vector wind fields, compared to a traditional narrow-field FPI, but at the cost of complexity and difficulty.<br><br></p> <p>Presently, we describe an application of inverse theory to reconstruct three-component vector thermospheric neutral wind fields using data from multiple SDI instruments. The salient features of the method used here are the ability to reconstruct three-component winds on a dense grid that is sampled regularly in latitude, longitude, and time, without assuming any a-priori underlying structure of the winds. This requires solving an inverse problem that does not in general yield a unique solution unless additional constraints are enforced. We describe this step, also known also as regularization, along with the strategy used to maximize the spatial resolution of the derived wind fields by automatically determining the minimum level of regularization that can produce stable inversions. We present example results obtained from applying this technique to one night of data from a network of SDIs in Alaska, and discuss the implications of these results for current understanding of thermospheric dynamics.</p>
CNN-based Network Application for Petrophysical Parameter Inversion: Sensitivity Analysis of Input-output Parameters and Network Architecture
<p>The uploaded file includes four groups of data. They have original elastic and reservoir parameters data, the k=5 and k=25 (k means the sampling interval in inline and crossline.), and testing dataset.</p>
The application of short and highly polymorphic microhaplotypes based on nonbinary-SNPs in kinship testing of extremely degraded samples
<p>Kinship testing becomes more difficult in extremely degraded samples. But commonly used genetic markers cannot completely solved this problem. Microhaplotype combining the advantages of STR and SNP may be a promising genetic marker for kinship testing in extremely degraded samples. Therefore, in this study, 36 short and highly polymorphism microhaplotype loci with length smaller than 100 bp and Ae greater than 3.0 were developed, of which 29 loci met the Hardy-Weinberg and linkage equilibrium. The CPD and CPE of these 29 loci were 0.99999999999999999999999997036 and 0.9999999945, respectively. Allele dropout of these loci was not observed in extremely degraded samples. Through simulated kinship analysis, the effectiveness of paternity testing reached 98.39% at threshold of 4/-4, and effectiveness of full-sibling testing reached 93.01% at threshold of 2/-2, which were greater than that of 15 STR loci. After combining with other 50 short and highly polymorphic microhaplotype loci, the effectiveness of half-sibling testing also reached 82.42% at the threshold of 2/-2. Our developed short and highly polymorphic microhaplotype loci may be useful for paternity testing and full-sibling testing in extremely degraded samples, and after combining with other short and highly polymorphic microhaplotype loci, may be helpful to analyze the more distant kinship relationship.</p>
Documentation and code for reproducing analyses presented in: vcferr: Development, Validation, and Application of a SNP Genotyping Error Simulation Framework
<p>Documentation and code for reproducing analyses presented in: vcferr: Development, Validation, and Application of a SNP Genotyping Error Simulation Framework. Please see the <strong>README.pdf</strong> for step-by-step instructions for reproducing the entire analysis described in the paper.</p>
Systemic application of the TRPV4 antagonist GSK2193874 induces tail vasodilation in a mouse model of thermoregulation
<p>In humans, skin is a primary thermoregulatory organ, with vasodilation leading to rapid body cooling, whereas in Rodentia the tail performs an analogous function. Many thermodetection mechanisms are likely to be involved including transient receptor potential vanilloid-type 4 (TRPV4), an ion channel with thermosensitive properties. Previous studies have shown that TRPV4 is a vasodilator by local action in blood vessels, so here we investigated whether constitutive TRPV4 activity effects <em>Mus muscularis</em> tail vascular tone and thermoregulation. We measured tail blood flow by pressure plethysmography in lightly sedated Mus muscularis (CD1 strain) at a range of ambient temperatures, with and without intraperitoneal administration of the blood brain barrier crossing TRPV4 antagonist GSK2193874. We also measured heart rate and blood pressure. As expected for a thermoregulatory organ, we found that tail blood flow increased with temperature. However, unexpectedly we found that GSK2193874 increased tail blood flow at all temperatures, and we observed changes in heart rate variability. Since local TRPV4 activation causes vasodilation that would increase tail blood-flow, these data suggest that increases in tail blood flow resulting from the TRPV4 antagonist may arise from a site other than the blood vessels themselves, perhaps in central cardiovascular control centres.</p>
A new tree-based methodological framework to infer the evolutionary history of Mesopolyploid lineages: An application to the Brassiceae tribe (Brassicaceae)
<p>Whole genome duplication events are notably widespread in plants and this poses particular challenges for phylogenetic inference in allopolyploid lineages, i.e. lineages that result from the merging of two or more diverged genomes after interspecific hybridization. The nuclear genomes resulting from allopolyploidization contain homologous gene copies from different evolutionary origins called homoeologs, whose orthologs must be sorted out in order to reconstruct the evolutionary history of polyploid clades. In this study, we propose a methodological approach to resolve the phylogeny of allopolyploid clades focusing on mesopolyploid genomes, which experienced some level of genome reshuffling and gene fractionation across their subgenomes. To illustrate our methodological framework, we applied it to a clade belonging to the model Brassicaceae plant family, the Brassiceae tribe, that experienced a mesohexaploidy event. The dataset analysed consists of both publically available genomic sequences and new transcriptomic data according to taxa. The present methodology requires a well-annotated reference genome, for which the identification of the parental subgenome fragments has been performed (e.g. Brassica rapa and Brassica oleracea). Focusing on fully retained genes (i.e., genes for which all homoeologous gene copies inherited from the parental lineages are still present in the reference genome), the method constructs multilabelled gene trees that allow subsequent assignment of each gene copy to its diploid parental lineage. Once the orthologous copies are identified, genes from the same parental origin are concatenated and tree-building methods are used to reconstruct the species tree. This method allows resolving the phylogenetic relationships (i) among extant species within a mesopolyploid clade, (ii) among the parental lineages of a mesopolyploid lineage, and (iii) between the parental lineages and closely related extant species. We report here the first well-resolved nuclear-based phylogeny of the Brassiceae tribe.</p>
Conjugated polymers for microwave applications: untethered sensing platforms and multifunctional devices
<p>Raw data for the manuscript "Conjugated polymers for microwave applications: untethered sensing platforms and multifunctional devices".</p> <p>In reference to the manuscript, the dataset is organized in three subsets, each related to one of the Figures in the main texts of the article:</p> <ol> <li>The return losses (S11 spectra) from the reconfigurable microwave resonators, in the form of .s1p files, realized with different tuning conjugated polymers;</li> <li>The electrochemical and microwave characterization of an enzymatic reaction cell / microwave resonator assembly;</li> <li>The microwave characterization of a amplitude- and frequency-tunable resonator.</li> </ol>
A modified Beer–Lambert–Bouguer law for nonrandom distributions and its application in gap probability calculations for heterogeneous canopies
<p>This repository contains the data, codes and files required to reproduce the results of the manuscript "A modified Beer–Lambert–Bouguer law for nonrandom distributions and its application in gap probability calculations for heterogeneous canopies" submitted to the Journal of Advances in Modeling Earth Systems (JAMES).</p>
Contaminations on Lidar Sensor Covers: Performance Degradation including Fault Detection and Modeling as Potential Applications
<p><strong>Data description of contamination measurements with lidar sensors RIEGL LD05-A20 and Ouster OS1-64</strong></p> <p><em><strong>Photos of the measurement setup</strong></em></p> <p>We provide photos of the measurement setup and the contaminations applied in the folder "/photos".</p> <p> </p> <p><em><strong>Riegl LD05-A20 data</strong></em></p> <p>The data of the Riegl LD05-A20 can be found in the folder "riegl_LD05-A20_full_waveforms" - one file per experiment. An example notebook for reading the data is provided in "/notebooks/example_riegl_LD05-A20.ipynb". Note that the files contain only the prominent peaks of the full waveform calculated by the V08Wave software provided by RIEGL. If you are interested in the entire full waveforms, please contact the authors.</p> <p> </p> <p><em><strong>Ouster OS1-64</strong></em></p> <p>The data of the Ouster OS1-64 can be found in the folder "ouster_OS1-64_point_clouds" - one folder per experiment. An example notebook for reading the data is provided in "/notebooks/example_ouster_OS1-64.ipynb". The python package <strong><em>pointcloudset</em></strong> (https://github.com/virtual-vehicle/pointcloudset) and its documentation is suggested for further data analytics of the point cloud data.</p> <p> </p>
Aggregated Network and Application Twitch.tv Live Streaming Dataset
<p>This dataset contains application and network measurements of 6,982 individual Twitch.tv streaming sessions of 222 different streamers summing up to more than 1,000h live streaming. The data are aggregated to uplink requests.</p>
Control Treatment/No Fertilizer Application - Amaranthus tricolor - Shoot Systems (mm) and Post-harvest Biomass Weights (g) - ASD_INRAE 2022
<p>Datasets of all raw data measurements for the shoot systems (mm); leaf lengths (mm), leaf widths (mm), heights (mm), stem widths (mm), shoot widths (mm), root lengths (mm), root widths (mm), and the number of leaves. Post-harvest biomass weights (g); fresh and dry weights (g); total weights (g), stem weights (g), shoot weights (g), leaf weights (g), and root weights (g), of the short-term vegetable species Amaranthus tricolor of control treatment/no fertilizer application (project duration for approximately ±56 days). </p>
Tailoring the Emission Wavelength of Color Centers in Hexagonal Boron Nitride for Quantum Applications
<p>Dataset for all studied defects (sorted by type and by wavelength) in terms of electronic transition type, transition energy, wavelength, and lattice deformation.</p>
Additional movies for a manuscript titled 'Leaf epidermal cells respond to application and removal of mechanical force by distinct cytosolic calcium waves'
<p>This repository provides 21 additional videos that highlight the spectrum of mechanically stimulated calcium responses observed in the leaf epidermis of <em>Arabidopsis t</em>. expressing the genetically encoded calcium indicator R-GECO1. These movies correspond to figures in a manuscript entitled 'Leaf epidermal cells respond to application and removal of mechanical force by distinct cytosolic calcium waves'. In each movie, a cantilever exerts approximately 5 mN force to the epidermis (where the cantilever looks like a shadow in the movies). Each movie contains a scale bar and the relative time (hr:min:sec). Placement of the cantilever generally occurs after approximately 1 minute.</p>
Content Analysis on System Dynamics Modelling Application in Agriculture
<p>The data is a compilation of journal articles retrieved from three databases - Scopus, Web of Science, and Science Direct, using this Boolean search string: ("system dynamics" OR "systems thinking" OR "causal loop diagram") AND ("Agri*" OR "Food" OR "Crop" OR "Meat" OR "Animal" OR "Livestock")). </p>
Semi-empirical error ellipsoid clustering for identifying the second-order structural features from a laboratory AE source location cloud—method, validation, and application to a hydraulic fracturing test [DATA]
<p>Data and metadata for the publication "Semi-empirical error ellipsoid clustering for identifying the second-order structural features from a laboratory AE source location cloud—method, validation, and application to a hydraulic fracturing test", published in Earth and Space Science.</p>
Mapping Phyllosilicates on the Asteroid Bennu Using Thermal Emission Spectra and Machine Learning Model Applications Datasets
<p>We provide laboratory spectra of pure minerals and mineral mixtures and the corresponding metadata. Derived from the laboratory data, we include the PLS model through coefficients. Through the application of the model, we provide the prediction values in volume% for Mg-rich serpentine, cronstedtite, and saponite for the BBD1, EQ3, and TAG datasets.</p>
Mapping Phyllosilicates on the Asteroid Bennu Using Thermal Emission Spectra and Machine Learning Model Applications
<p>We provide the laboratory spectra and metadata that was used to construct the PLS model coefficients. Through the application of the model, we provide the prediction values in volume% for Mg-rich serpentine, cronstedtite, and saponite for the BBD1, EQ3, and TAG datasets.</p>
Original data for publications: Direct solution–based synthesis of the Na4(B12H12)(B10H10) solid electrolyte, Experimental investigation of Mg(B3H8)2 dimensionality, materials for energy storage applications, Thermal Conversion of Unsolvated Mg(B3H8)2 to BH4– in the Presence of MgH2
<p>Original data for the following papers (Only part of University of Geneva, synthesis part):</p> <p>Direct solution–based synthesis of the Na4(B12H12)(B10H10) solid electrolyte<br> Gigante, A.; Duchêne, L.; Moury, R.; Pupier, M.; Remhof, A.; Hagemann, H.<br> ChemSusChem 2019, 12, 4832-4837</p> <p>Experimental investigation of Mg(B3H8)2 dimensionality, materials for energy storage applications<br> Romain Moury, Angelina Gigante, Arndt Remhof, Elsa Roedern and Hans Hagemann<br> Dalton Trans., 2020,49, 12168-12173, https://doi.org/10.1039/D0DT02170A</p> <p>Thermal Conversion of Unsolvated Mg(B3H8)2 to BH4– in the Presence of MgH2<br> Angelina Gigante, Noemi Leick, Andrew S. Lipton, Ba Tran, Nicholas A. Strange, Mark Bowden, Madison B. Martinez, Romain Moury, Thomas Gennett, Hans Hagemann, and Tom S. Autrey<br> ACS Appl. Energy Mater. 2021, 4,3737-3747. https://doi.org/10.1021/acsaem.1c00159</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.