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Supplemental Material to "The Small-Amplitude Dynamics of Spontaneous Tropical Cyclogenesis. Part II: Linear Stability Analysis"
<p>This is the supplemental material to the manuscript "The Small-Amplitude Dynamics of Spontaneous Tropical Cyclogenesis. Part II: Linear Stability Analysis". It deposits:</p> <p>(1) A handwritten math derivation note (math_derivation_note.pdf).</p> <p>(2) A movie version of Figure 1 (Part_II_movie.avi).</p> <p>(3) The Fortran code for amplifying the longwave radiative feedback in CM1 (Radiation_amplification_RAD_parameter_in CM1.txt).</p> <p>(4) The MATLAB postprocessing codes for generating data figures (postprocessing_code.zip).</p> <p>(5) The MATLAB solver of the four-layer QG model (four_layer_QG_solver.m).</p> <p>(6) Supplemental figures (supplement_figures.pdf). </p> <p>Please contact Dr. Hao Fu (haofu@uchicago.edu or haofu736@gmail.com) if you have any questions. </p>
FIGURE 5 in Diversity, seasonal and diel distribution of snappers (Lutjanidae: Perciformes) in a tropical coastal inlet in the southwestern Gulf of Mexico
FIGURE 5 | Number of individuals captured of the two most abundant species, Lutjanus griseus and L. synagris, according to a salinity gradient.
FIGURE 4 in Diversity, seasonal and diel distribution of snappers (Lutjanidae: Perciformes) in a tropical coastal inlet in the southwestern Gulf of Mexico
FIGURE 4 | Canonical Correspondence Analysis tri-plot of species, samples (months represented by numbers; letters "a" and "b" represent night and twilight samples, respectively, and the absence of letter represents daytime samples) and environmental variables (arrows). Diel periods were considered to be in a light-dark gradient in an ordinal scale with values of 2 (day), 1 (twilight), and 0 (night).
FIGURE 3 in Diversity, seasonal and diel distribution of snappers (Lutjanidae: Perciformes) in a tropical coastal inlet in the southwestern Gulf of Mexico
FIGURE 3 | Mean number and standard error of Lutjanus griseus abundance by hour of day at the inlet of La Mancha lagoon.
FIGURE 2 in Diversity, seasonal and diel distribution of snappers (Lutjanidae: Perciformes) in a tropical coastal inlet in the southwestern Gulf of Mexico
FIGURE 2 | Monthly variation of: A. Mean and standard error values of the three most abundant lutjanid species, and B. Values of the main environmental conditions studied in the study area.
FIGURE 4 in Fish biodiversity of a tropical estuary under severe anthropic pressure (Doce River, Brazil)
FIGURE 4 | Main human-driven impacts after the 19th century and their consequences on the Doce River basin. Photos by A. Villela (Exotic species) and E. Nascimento (Mining dam collapse); the other pictures belong to the public domain (Tab. S2).
FIGURE 2 in Fish biodiversity of a tropical estuary under severe anthropic pressure (Doce River, Brazil)
FIGURE 2 | Number of species, genera and families for fish orders in the Doce River estuary. The following orders were represented by a single species and were omitted in the figure: Anguilliformes, Atheriniformes, Aulopiformes, Beloniformes, Blenniiformes, Centrarchiformes, Cyprinodontiformes, Elopiformes, Scombriformes, Spariformes, Symbranchiformes and Syngnathiformes (illustrative taxa images from Phylopic.org).
FIGURE 1 in Fish biodiversity of a tropical estuary under severe anthropic pressure (Doce River, Brazil)
FIGURE 1 | Location of the study area in Eastern Brazil with some features detailed: A. Sandy banks; B. Marginal creek; and C. Main channel of the Doce River estuary (DRE). Photos: Helder C. Guabiroba (A; C), Alexandre Villela (B). Aerial image source: (GEOBASES, 2015).
FIGURE 3 in Fish biodiversity of a tropical estuary under severe anthropic pressure (Doce River, Brazil)
FIGURE 3 | Examples of fishes recorded for the first time in the Doce River estuary. A. Cichlasoma dimerus; B. Pygocentrus nattereri; C. Coptodon rendalli; D. Butis koilomatodon; E. Lutjanus cyanopterus; F. Genidens barbus; G. Pimelodus maculatus; H. Catathyridium garmani. Photos: Helder C. Guabiroba (A, B, C, E, H), Flávio T. Szablak (D, F, G).
FIGURE 1 in Variation in patterns of fish assemblage and their environmental correlates in a tropical river basin from the Gulf of Mexico slope
FIGURE 1 | Study area and sampling sites in the Usumacinta River basin (shaded area in figure box), Mexico. Site number and names of the main rivers in the region are enclosed in boxes (see Tab. 1 for names of watercourses). Black arrow indicates flow direction.
FIGURE 2 in Variation in patterns of fish assemblage and their environmental correlates in a tropical river basin from the Gulf of Mexico slope
FIGURE 2 | Relative contribution of common species to total fish abundance by seasons (left panel) and years (right panel). Species shown had a contribution above the 50% quantile for abundance. Refer to Tab. 1 for species acronyms.
FIGURE 5 in Variation in patterns of fish assemblage and their environmental correlates in a tropical river basin from the Gulf of Mexico slope
FIGURE 5 | Plots for the redundancy analysis of fish communities and environmental data, displaying weighted averages of species scores (A), fitted site scores (B), and species scores of significant species (C). Centroids of factor "ORD" are indicated by a "×". Convex hulls (A, C) and point shape (A, B) show cluster affiliation. DO, dissolved oxygen; DU, distance to the confluence with the Usumacinta River; FC, forest cover; ORD, stream order; TC, water temperature.
FIGURE 8 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific
FIGURE 8 | Mantel test of correlation between genetic (y-axis) and geographic distances (x-axis) among sampled locations. The black line represents the central tendency among the dots in the scatterplot.
FIGURE 7 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific
FIGURE 7 | STRUCTURE-like plot illustrating cluster membership for all admixed individuals having <0.5 probability of membership to any group. Sampled locations include La Paz (LAP), Colima (COL), Oaxaca (OAX), Chiriquí (CHI), and Port of Panama (PP).
FIGURE 2 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific
FIGURE 2 | Genetic diversity in Lutjanus guttatus from five sampled locations. Numbers of alleles (NA), effective alleles (NEA), and private alleles (NPA) and observed (HO) and unbiased expected heterozygosities (uHE).
FIGURE 1 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific
FIGURE 1 | Sampling sites for adult Lutjanus guttatus along the Tropical Eastern Pacific. La Paz (PAZ), Colima (COL), and Oaxaca (OAX) are in Mexican waters and Chiriquí (CHI) and Panama Port (PAN) are in Panama.
FIGURE 5 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific
FIGURE 5 | Discriminant Analysis of Principal Components (DAPC) of Lutjanus guttatus from five sampled sites based on 12 microsatellite loci, 80 PCs, and four DA eigenvalues. Sampled locations include La Paz (LAP), Colima (COL), Oaxaca (OAX), Chiriquí (CHI), and Port of Panamá (PP).
FIGURE 4 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific
FIGURE 4 | UPGMA dendrogram of Lutjanus guttatus from five sampled locations along the Pacific coast of Mexico (La Paz, Colima, Oaxaca) and Panama (Chiriquí, Port of Panama) based on Nei's genetic distance (1972). Numbers on the nodes indicate the percent of times the illustrated topology was found with 10,000 bootstrap replicates.
FIGURE 4 in Variation in patterns of fish assemblage and their environmental correlates in a tropical river basin from the Gulf of Mexico slope
FIGURE 4 | Multivariate regression tree of transformed species abundances and environmental data. Percentage of improvement in the model is shown under each node; discriminating environmental variables and threshold values are shown at each split. DO, dissolved oxygen; ORD, stream order; n, number of samples.
FIGURE 3 in Variation in patterns of fish assemblage and their environmental correlates in a tropical river basin from the Gulf of Mexico slope
FIGURE 3 | Principal component analysis plot of environmental data. DO, dissolved oxygen; DU, distance to the confluence with the Usumacinta River; EC, electric conductivity; FC, forest cover; ORD, stream order.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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