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1,048 results for “interpreting”
Data from: A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data
Our understanding of macroevolutionary patterns of adaptive evolution has greatly increased with the advent of large-scale phylogenetic comparative methods. Widely used Ornstein-Uhlenbeck (OU) models can describe an adaptive process of divergence and selection. However, inference of the dynamics of adaptive landscapes from comparative data is complicated by interpretational difficulties, lack of identifiability among parameter values and the common requirement that adaptive hypotheses must be assigned a priori. Here we develop a reversible-jump Bayesian method of fitting multi-optima OU models to phylogenetic comparative data that estimates the placement and magnitude of adaptive shifts directly from the data. We show how biologically informed hypotheses can be tested against this inferred posterior of shift locations using Bayes Factors to establish whether our a priori models adequately describe the dynamics of adaptive peak shifts. Furthermore, we show how the inclusion of informative priors can be used to restrict models to biologically realistic parameter space and test particular biological interpretations of evolutionary models. We argue that Bayesian model-fitting of OU models to comparative data provides a framework for integrating of multiple sources of biological data–such as microevolutionary estimates of selection parameters and paleontological timeseries–allowing inference of adaptive landscape dynamics with explicit, process-based biological interpretations.
Replication Data for: Interpretable machine learning prediction of fire emission and comparison with FireMIP process-based models
<p>The target and predictor variables used in the developed ML model.</p>
Artifact for the paper "Abstract Interpretation of LLVM with a Region-Based Memory Model"
<p>Contain all scripts necessary to reproduce the results (Table 1) in the paper.</p>
Figure 4 in Microstructures and nanostructures of high Andean Penaincisalia lycaenid butterfly scales (Lepidoptera: Lycaenidae): descriptions and interpretations
Figure 4. Scanning electron micrographs of Penaincisalia culminicola scale microstructures. (A) Tile-shaped scales with dentate anterior margins; (B) low longitudinal ridges, straight cross ribs, widely opening microcells, pepperpot layers; (C) moderate longitudinal ridges, curved cross ribs with layers of wispy material; (D) high longitudinal ridges with flutes, closely set v-shaped cross ribs, rectangular and almost closed microcells.
FIGURE 3 in The long-tongued Cretaceous scorpionfly Parapolycentropus Grimaldi and Rasnitsyn (Mecoptera: Pseudopolycentropodidae): New data and interpretations
FIGURE 3. Photomicrographs of Parapolycentropus sp., a small, possibly new species. A. Small aggregation (swarm?) of 3 males, JZC Bu433; B. Detail of one male in aggregation. C. Female, JZC Bu1329.
Fig. 27 in Jaws of Late Cretaceous Placenticeratid Ammonites: How Preservation Affects the Interpretation of Morphology
Fig. 27. Drawing of the left wing of the lower jaw of UMUT MM28896 (see fig. 26E–H), showing pieces of the outer calcitic layer (dotted area). Texture as defined in figure 4.
Fig. 16 in Jaws of Late Cretaceous Placenticeratid Ammonites: How Preservation Affects the Interpretation of Morphology
Fig. 16. Drawing of BHMNH 5041 (see fig. 15) showing the thickened area of black material on each side of the midline slit. Texture as defined in figure 4.
Figure 1 in The holotypes of the upper Pleistocene Crocuta crocuta spelaea (Goldfuss, 1823: Hyaenidae) and Panthera leo spelaea (Goldfuss, 1810: Felidae) of the Zoolithen Cave hyena den (South Germany) and their palaeo-ecological interpretation
Figure 1. Geographical position of the Zoolithen Cave (Bavaria, southern Germany) with both originals and compared regions with Ice Age spotted hyena den sites, at which Late Pleistocene lion remains were found in northern Germany and central Czech Republic.
Figure 7 in Developmental patterns of the crocodilian and avian columella auris: reappraisal of interpretations of the derivation of the dorsal hyoid arch in archosaurian tetrapods
Figure 7. Development of the columella auris and surrounding tissues in Struthio camelus. A–F, day-13 embryo, transverse sections through the external and middle ear region. G, day-15 embryo, postero-left lateral view. H, day-16 embryo, right lateral view. For abbreviations see the Appendix. A–F, histological sections; G and H, whole mounts.
FIGURE 6 in A new species of Euprox (Cervidae, Artiodactyla) from the upper Miocene of the Linxia Basin, Gansu Province, China, with interpretation of its paleoenvironment
FIGURE 6. Dentition of Euprox grandis sp. nov. (V 20080.1, holotype). Scale bar equals 2 cm.
Figure 7 from: Matalin A, Makarov M (2011) Using demographic data to better interpret pitfall trap catches. ZooKeys 100: 223-254. https://doi.org/10.3897/zookeys.100.1530
Figure 7 - Numbers of the 10 most abundantly collected carabid species in reedbeds with regards to migrants (A) and residents only (B). Dominant species are in bold text, combined data for 2006/07; N (ex.) – number of specimens (after Makarov and Matalin 2009).
Figure 6 from: Matalin A, Makarov M (2011) Using demographic data to better interpret pitfall trap catches. ZooKeys 100: 223-254. https://doi.org/10.3897/zookeys.100.1530
Figure 6 - Species diversity and the share of labile/stable components in particular habitats in the Lake Elton region, combined data for 2006/07 (black bars – labile component, white bars – stable component, line – number of species; N (sp.) – number of species).
Figure 4 from: Matalin A, Makarov M (2011) Using demographic data to better interpret pitfall trap catches. ZooKeys 100: 223-254. https://doi.org/10.3897/zookeys.100.1530
Figure 4 - Seasonal dynamics of activity, as well as the age structure of the populations of Harpalus rufipes from reedbeds along the River Khara (A) and Pseudotaphoxenus rufitarsis major from the lakeside salt-marsh (B), in 2006 (see Figure 2 for further explanations).
Figure 3 from: Matalin A, Makarov M (2011) Using demographic data to better interpret pitfall trap catches. ZooKeys 100: 223-254. https://doi.org/10.3897/zookeys.100.1530
Figure 3 - Seasonal dynamics of activity, as well as the age structure of the populations of Calathus ambiguus from grass-forb steppe with Amygdalus nana (A) and Pseudotaphoxenus rufitarsis major from sagebrush-grassland desert steppe on the northern slope of Ulagan Mountain (B), in 2006 (breaks in the periods of activity of immature specimens correspond to the time of aestivation parapause; see Figure 2 for further explanations).
Figure 2 from: Matalin A, Makarov M (2011) Using demographic data to better interpret pitfall trap catches. ZooKeys 100: 223-254. https://doi.org/10.3897/zookeys.100.1530
Figure 2 - Seasonal dynamics of activity, as well as the age structure of the populations of Pogonus transfuga (A) and Brachinus hamatus (B) from reedbeds along the River Khara, combined data for 2006/07 (T – teneral, Im – immature, M – mature, Sp – spent beetles; solid lines below graphs parental generation, dashed lines below graphs – new generation; N (ex.) – number of specimens; 1, 2, 3 – first, second and third ten-day periods per month, respectively).
Figure 1 from: Matalin A, Makarov M (2011) Using demographic data to better interpret pitfall trap catches. ZooKeys 100: 223-254. https://doi.org/10.3897/zookeys.100.1530
Figure 1 - Chronology of changes in periods of activity of individual 'age' groups, characterised by female gonad condition, in 'spring' (A) and 'autumn' (B) breeding carabid beetles (T – teneral, Im – immature, M – mature, Sp – spent beetles).
Figure 5 from: Matalin A, Makarov M (2011) Using demographic data to better interpret pitfall trap catches. ZooKeys 100: 223-254. https://doi.org/10.3897/zookeys.100.1530
Figure 5 - Seasonal variation in abundance curves and reproduction aspects in four resident carabid species coupled with abundance of a migrant-species Harpalus rufipes from reedbeds, combined data for 2006/07 (R and L right and left Y axis, respectively; N (ex.) – number of specimens).
Figure 2 from: Mossakowski D, Dormann W (2011) A plea for using qualitative aspects in the interpretation of ecological field data as revealed by carabid beetle assemblages of a pristine salt marsh. ZooKeys 100: 273-286. https://doi.org/10.3897/zookeys.100.1532
Figure 2 - IndVals at different levels in the UPGMA tree. Result for a single species, Dicheirotrichus gustavii, calculated by the original IndVal program. Eight values of the nine levels are significant. Data: abundance/frequency data. 7/4: a total of seven specimens were found in four of the five traps. Sites 102 and 103 are omitted.
Figure 1 from: Mossakowski D, Dormann W (2011) A plea for using qualitative aspects in the interpretation of ecological field data as revealed by carabid beetle assemblages of a pristine salt marsh. ZooKeys 100: 273-286. https://doi.org/10.3897/zookeys.100.1532
Figure 1 - Result of a cluster analysis using Relative Euclidean distances and Ward's method. Most traps of the site at the lowest elevation (-20 cm below MHW) cluster with those of 100 cm above MHW. Arrow: One trap of -20 behaves differently.
Figure 3 from: Mossakowski D, Dormann W (2011) A plea for using qualitative aspects in the interpretation of ecological field data as revealed by carabid beetle assemblages of a pristine salt marsh. ZooKeys 100: 273-286. https://doi.org/10.3897/zookeys.100.1532
Figure 3 - Results of the IndVal procedure depend on the tree used. Data: abundance/frequency of Cillenus lateralis along the elevation gradient. 3/3: a total of three specimens was found in three of the five traps. Sites 102 and 103 are omitted.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.