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865
datasets available to search
ShareScore release 0.7.1
Dataset results
865 results for “mitochondrial genome”
Implication of G-quadruplexes in mitochondrial gene expression and genome replication
GEO Series GSE103116. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Mitochondrial Genetic Background Modulates Phenotype and Nuclear-Mitochondrial Genome Expression in Isolated Adult Cardiomyocytes of Volume Overload
GEO Series GSE218640. Mus musculus. 48 samples. Type: Expression profiling by high throughput sequencing.
Kazak mitochondrial genomes provide insights into the human population history of Central Eurasia
GEO Series GSE208402. Homo sapiens. 80 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Differential prognostic roles of mitochondrial and genomic tRNA-derived fragments in colorectal liver metastases: A retrospective cohort study
GEO Series GSE293849. Homo sapiens. 40 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Whole Sequencing Of The Mitochondrial Genome Of Breast Tumor Tissue In Mexican-Mestizo Postmenopausal Women, With Different Body Mass Index
GEO Series GSE125801. Homo sapiens. 12 samples. Type: Genome variation profiling by genome tiling array.
Transfer of mitochondrial DNA into the nuclear genome during induced DNA breaks
GEO Series GSE226884. Homo sapiens; Mus musculus. 120 samples. Type: Other.
Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_clones_scATAC]
GEO Series GSE115211. Homo sapiens. 96 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Figure 1 from: Wu Y-A, Gao J-W, Cheng X-F, Xie M, Yuan X-P, Liu D, Song R (2020) Characterization and comparative analysis of the complete mitochondrial genome of Azygia hwangtsiyui Tsin, 1933 (Digenea), the first for a member of the family Azygiidae. ZooKeys 945: 1-16. https://doi.org/10.3897/zookeys.945.49681
Figure 1 An annular diagram of the Azygia hwangtsiyui mitochondrial genome.
Figure 5 from: Zhongying Q, Huihui C, Hao Y, Yuan H, Huimeng L, Xia L, Xingchun G (2020) Comparative mitochondrial genomes of four species of Sinopodisma and phylogenetic implications (Orthoptera, Melanoplinae). ZooKeys 969: 23-42. https://doi.org/10.3897/zookeys.969.49278
Figure 5 The phylogenetic tree based on 37 mitochondrial genes. (A) ML tree; (B) BI tree.
Figure 2 from: Zhongying Q, Huihui C, Hao Y, Yuan H, Huimeng L, Xia L, Xingchun G (2020) Comparative mitochondrial genomes of four species of Sinopodisma and phylogenetic implications (Orthoptera, Melanoplinae). ZooKeys 969: 23-42. https://doi.org/10.3897/zookeys.969.49278
Figure 2 The relative synonymous codon frequencies from the four species.
Figure 4 from: Zhongying Q, Huihui C, Hao Y, Yuan H, Huimeng L, Xia L, Xingchun G (2020) Comparative mitochondrial genomes of four species of Sinopodisma and phylogenetic implications (Orthoptera, Melanoplinae). ZooKeys 969: 23-42. https://doi.org/10.3897/zookeys.969.49278
Figure 4 The main repeat elements in A+T-rich regions from four species.
Figure 1 from: Zhongying Q, Huihui C, Hao Y, Yuan H, Huimeng L, Xia L, Xingchun G (2020) Comparative mitochondrial genomes of four species of Sinopodisma and phylogenetic implications (Orthoptera, Melanoplinae). ZooKeys 969: 23-42. https://doi.org/10.3897/zookeys.969.49278
Figure 1 Circular map of the mitogenome from four species.
The complete mitochondrial genome of the tropical oyster Saccostrea echinata (Bivalvia: Ostreidae) from the South China Sea
<p><strong>Complete mitogenome of the tropical oyster <em>Saccostrea echinata</em> as fasta file.</strong></p>
Figure 2 from: Qi L, Kong L, Li Q (2020) Redescription of Stenothyra glabra A. Adam, 1861 (Truncatelloidea, Stenothyridae), with the first complete mitochondrial genome in the family Stenothyridae. ZooKeys 991: 69-83. https://doi.org/10.3897/zookeys.991.51408
Figure 2 Map of the complete mitochondrial genome of Stenothyra glabra.
Figure 3 from: Sun G, Zhao C, Xia T, Wei Q, Yang X, Feng S, Sha W, Zhang H (2020) Sequence and organisation of the mitochondrial genome of Japanese Grosbeak (Eophona personata), and the phylogenetic relationships of Fringillidae. ZooKeys 995: 67-80. https://doi.org/10.3897/zookeys.995.34432
Figure 3 Codon distribution in the mitochondrial genome of Eophona personata.
Figure 2 from: Sun G, Zhao C, Xia T, Wei Q, Yang X, Feng S, Sha W, Zhang H (2020) Sequence and organisation of the mitochondrial genome of Japanese Grosbeak (Eophona personata), and the phylogenetic relationships of Fringillidae. ZooKeys 995: 67-80. https://doi.org/10.3897/zookeys.995.34432
Figure 2 Predicted secondary structures for the 22 tRNAs in Eophona personata.
Figure 4 from: Sun G, Zhao C, Xia T, Wei Q, Yang X, Feng S, Sha W, Zhang H (2020) Sequence and organisation of the mitochondrial genome of Japanese Grosbeak (Eophona personata), and the phylogenetic relationships of Fringillidae. ZooKeys 995: 67-80. https://doi.org/10.3897/zookeys.995.34432
Figure 4 Mitochondrial gene order and arrangement in Eophona personata.
Figure 3 from: Shan W, Tursun M, Zhou S, Zhang Y, Dai H (2021) Complete mitochondrial genome sequence of Lepus yarkandensis Günther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis. ZooKeys 1012: 135-150. https://doi.org/10.3897/zookeys.1012.59035
Figure 3 Evolutionary rates of the Lepus yarkandensis mitogenome by Ka/Ks.
Figure 2 from: Shan W, Tursun M, Zhou S, Zhang Y, Dai H (2021) Complete mitochondrial genome sequence of Lepus yarkandensis Günther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis. ZooKeys 1012: 135-150. https://doi.org/10.3897/zookeys.1012.59035
Figure 2 GC and AT skews for mitochondrial PCGs in Lepus yarkandensis.
Data from: Mitochondrial genomes of domestic animals need scrutiny
More than 1000 complete or near-complete mitochondrial DNA (mtDNA) sequences have been deposited in GenBank for eight common domestic animals (cattle, dog, goat, horse, pig, sheep, yak and chicken) and their close wild ancestors or relatives, as well. Nevertheless, few efforts have been performed to evaluate the sequence data quality. Herein, we conducted a phylogenetic survey of these complete or near-complete mtDNA sequences based on mtDNA haplogroup trees for the eight animals. We show that errors due to artificial recombination, surplus of mutations, and phantom mutations, do exist in 14.5% (194/1342) of mtDNA sequences and all of them should be treated with wide caution. We propose some caveats for future mtDNA studies of domestic animals.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.