Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
13,587
datasets available to search
ShareScore release 0.9.0
Dataset results
13,587 results for “specification”
Data S1. Human PGBD5 DNA transposase promotes site-specific oncogenic mutations in rhabdoid tumors
<p>Supplementary data S1 for Henssen et al. "</p> <p>Human PGBD5 DNA transposase promotes site-specific oncogenic mutations in rhabdoid tumors"</p>
Data Release: A Domain Specific Language for Performance Portable Molecular Dynamics Algorithms
<p>The archive contains the supporting data for the results described in the paper titled "A Domain Specific Language for Performance Portable Molecular Dynamics Algorithms".</p> <p>For more information see either the individual README files or consult the project git repository:</p> <p>https://bitbucket.org/wrs20/ppmd</p> <p> </p> <p>Copyright W.R.Saunders 2017</p>
Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions
<p><strong>Summary</strong></p> <p>Resource data across the 76 cell types from FANTOM5 analysed in our paper titled "Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions".</p> <p><strong>Project abstract</strong></p> <p>Gene transcription is influenced by favourable chromosome positioning and chromatin architectures bringing regulatory elements in close proximity. However, it is unclear to what extent transcription is attributable to topological organisation or to gene-specific regulatory programs. Here, we develop a strategy to transcriptionally decompose expression data into two main components reflecting the positional relationship of neighbouring transcriptional units and effects independent from their positioning. </p> <p>We demonstrate that the positionally dependent component is highly informative of topological domain activity and organisation, revealing boundaries and chromatin compartments. Furthermore, features derived from transcriptional components can accurately predict individual chromatin interactions. We systematically investigate regulatory interactions and observe different transcriptional attributes governing long- and short-range interactions. Finally, we assess differences in regulatory organisations across 76 human cell types. In all, we demonstrate a close relationship between transcription and topological chromatin architecture and provide an unprecedented resource for investigations of regulatory organisations across cell types.</p> <p><strong>Included files</strong></p> <p>PD_component_76_cell_types.tar.gz - Contains the positionally dependent (PD) components for 76 human cell types.</p> <p>PD_sd_component_76_cell_types.tar.gz - Contains the standard deviations of the positionally dependent (PD_sd) components for 76 human cell types.</p> <p>PI_component_76_cell_types.tar.gz - Contains the positionally independent (PI) components for 76 human cell types.</p> <p>PI_sd_component_76_cell_types.tar.gz - Contains the standard deviations of the positionally independent (PI_sd) components for 76 human cell types.</p> <p>predicted_EP_interactions_76_cell_types.tar.gz - Contains predicted enhancer-promoter interactions for 76 human cell types.</p> <p>predicted_boundaries_76CT.txt - Matrix with 76 columns representing human cell types and 10kb genome-wide bins as rows, coded as 0 or 1 according to whether a XAD boundary was predicted in the bin for a given cell type.</p>
Database specific for the pesticide active substance and their metabolites, comprising the main genotoxicity endpoints
<p>In 2014, EFSA has commissioned the compilation of a database specific for the pesticide residues including active substances and their metabolites, which comprises different genotoxicity endpoints, i.e. point mutations, structural and numerical chromosome aberrations, and DNA damage.</p> <p>Data collection on individual genotoxicity studies has been retrieved from regulatory toxicological reports (Draft or Renewal Assessment Reports, i.e. DARs or RARs, respectively) as provided by the Rapporteur Member State (RMS) during the pesticide peer review process at European Level. The final EFSA conclusion on the overall genotoxic potential of active substance or metabolites taking into account all available information is not included in the database. </p> <p>The database contains identity and genotoxicity information on more than 290 active substances and some of their metabolites.</p> <p>The database represents a practical tool to complement in-silico tools i.e. QSAR (Quantitative structure–activity relationship models), grouping and read across for prediction of the genotoxicity hazard of the pesticides residues, and it supposes to enlarge the chemical domains for their application.</p> <p><strong>Format: xls; contact: data.collection@efsa.europa.eu, pesticides.ppr@efsa.europa.eu </strong></p> <p><br> <strong>DISCLAIMER</strong><br> Without prejudice to the legal notice applicable to EFSA's website available here, the following legal notice applies to the Pesticide genotoxicity database and any documents, data or information contained therein. Users are advised to read this legal notice carefully before accessing, using or reading any document, data or information made available in this context, or making any other use of the Database.<br> The Pesticide genotoxicity database is a compilation of chemical and genotoxicity information on active substances and some of their metabolites. The database contains the results of individual studies as initially assessed by the Rapporteur member state (RMS) and reported in the respective Draft assessment reports (DARs) or Renewal Assessment Reports (RARs). The final EFSA Conclusions on the respective active substances are available to the public on the EFSA Journal. The database includes the data that was available at the moment of compilation of the database (December 2016) and will be updated on a regular basis by including or deleting of information as a result of renewal procedure of active substances (Regulation (EU) No 1107/2009). <br> EFSA makes no representations or warranties about the accuracy or suitability of any document, information, data provided in the Database. In case of discrepancy between the data provided in the original scientific output (DARs/RARs) and that in this database, preference shall be given to the former.<br> This database does not disclose any commercially sensitive or otherwise confidential information. Unless otherwise stated, the owners of the data compiled in this database are the applicants under Regulation (EU) No 1107/2009, and by acceiding the Database you acknowledge that agreement for reuse of these data should be sought from them.<br> The information provided in the Database and related materials are not intended to constitute advice of any kind or the rendering of consulting, or other professional services of any kind. Acceding the Database does not establish any contractual relationship with EFSA. Users are advised to consult with an attorney, food consultant or other professional to determine what may be best for your individual needs.<br> By acceding the Database, you also acknowledge that the documents, data or information made available by EFSA may contain inaccuracies or errors. The content of the information provided is for your information and use only. It may be subject to change at any time and without prior notice by EFSA.</p>
ROS-specific Huntingtin Interactions: Crosslinking Optimization
<p>Optimization step in the lead up to mass spec identification of ROS-specific huntingtin protein-protein interactions.</p>
ROS-specific Huntingtin Interactions: Fractionation Optimization
<p>Optimization step in the lead up to mass spec identification of ROS-specific huntingtin protein-protein interactions.</p>
ROS-specific Huntingtin Interactions: Oxidative Stress Optimization H2O2
<p>Optimization step in the lead up to mass spec identification of ROS-specific huntingtin protein-protein interactions.</p>
ROS-Specific Huntingtin Interactions: IP Optimization in Patient-Derived Cells
<p>Optimization step in the lead up to mass spec identification of ROS-specific huntingtin protein-protein interactions.</p>
Education- and age-specific fertility rates for 50 African and Latin American countries between 1970 and 2020
<p><strong>Version 2</strong></p> <p>Education- and age-specific fertility rates for 50 African and Latin American countries between 1970 and 2020 as published in<strong> <a href="https://www.demographic-research.org/articles/volume/49/31/">Durowaa-Boateng et. al (2023</a></strong><a href="10.4054/DemRes.2023.49.31">)</a>. </p> <p>The data and figures can be accessed and downloaded from <strong><a href="https://populationafrica.org/">https://populationafrica.org/</a>.</strong></p> <p> </p> <p><strong>Education- and age-specific fertility rates for 50 African and Latin American countries between 1970 and 2020</strong>.</p> <p>The fertility rates are consistent with the United Nation's World Population Prospects (UN WPP) 2022 fertility rates.</p> <p>The Bayesian model developed to reconstruct the fertility rates using Demographic and Health Surveys and the UN WPP is published in a <a href="https://pure.iiasa.ac.at/id/eprint/18890/">working paper</a>.</p> <p><strong>Abstract:</strong></p> <p>Consistent and reliable time series of education- and age-specific fertility rates for the past are difficult to obtain in developing countries, although they are needed to evaluate the impact of women’s education on fertility along periods and cohorts. In this paper, we propose a Bayesian framework to reconstruct age-specific fertility rates by level of education using prior information from the birth history module of the Demographic and Health Surveys (DHS) and the UN World Population Prospects. In our case study regions, we reconstruct age- and education-specific fertility rates which are consistent with the UN age specific fertility rates by four levels of education for 50 African and Latin American countries from 1970 to 2020 in five-year steps. Our results show that the Bayesian approach allows for estimating reliable education- and age-specific fertility rates using multiple rounds of the DHS surveys. The time series obtained confirm the main findings of the literature on fertility trends, and age and education specific differentials.</p> <p><strong>Funding:</strong></p> <p>These data sets are part of the <a href="https://www.oeaw.ac.at/vid/research/research-projects/bayesedu">BayesEdu Project </a>at Wittgenstein Centre for Demography and Global Human Capital (IIASA, OeAW, University of Vienna) funded from the “Innovation Fund Research, Science and Society” by the Austrian Academy of Sciences (ÖAW).</p> <p><strong>Variables:</strong></p> <p>Country: Country names</p> <p>Education: Four education levels, No Education, Primary Education, Secondary Education and Higher Education.</p> <p>Age group: Five-year age groups between 15-19 and 45-49. </p> <p>Year: Five-year periods between 1970 and 2020.</p> <p>Median: Median education and age-specific fertility rate estimate </p> <p>Upper_CI: 95% Upper Credible Interval</p> <p>Lower_CI: 95% Lower Credible Interval</p> <p> </p> <p><strong>List of countries:</strong></p> <table> <tbody> <tr> <td> <p>Angola</p> </td> </tr> <tr> <td> <p>Benin</p> </td> </tr> <tr> <td> <p>Brazil</p> </td> </tr> <tr> <td> <p>Burkina Faso</p> </td> </tr> <tr> <td> <p>Burundi</p> </td> </tr> <tr> <td> <p>Cameroon</p> </td> </tr> <tr> <td> <p>Central African Republic</p> </td> </tr> <tr> <td> <p>Chad</p> </td> </tr> <tr> <td> <p>Colombia</p> </td> </tr> <tr> <td> <p>Comoros</p> </td> </tr> <tr> <td> <p>Congo</p> </td> </tr> <tr> <td> <p>Côte D'Ivoire</p> </td> </tr> <tr> <td> <p>DR Congo</p> </td> </tr> <tr> <td> <p>Ecuador</p> </td> </tr> <tr> <td> <p>Egypt</p> </td> </tr> <tr> <td> <p>Eswatini</p> </td> </tr> <tr> <td> <p>Ethiopia</p> </td> </tr> <tr> <td> <p>Gabon</p> </td> </tr> <tr> <td> <p>Gambia</p> </td> </tr> <tr> <td> <p>Ghana</p> </td> </tr> <tr> <td> <p>Guatemala</p> </td> </tr> <tr> <td> <p>Guinea</p> </td> </tr> <tr> <td> <p>Honduras</p> </td> </tr> <tr> <td> <p>Kenya</p> </td> </tr> <tr> <td> <p>Lesotho</p> </td> </tr> <tr> <td> <p>Liberia</p> </td> </tr> <tr> <td> <p>Madagascar</p> </td> </tr> <tr> <td> <p>Malawi</p> </td> </tr> <tr> <td> <p>Mali</p> </td> </tr> <tr> <td> <p>Mexico</p> </td> </tr> <tr> <td> <p>Morocco</p> </td> </tr> <tr> <td> <p>Mozambique</p> </td> </tr> <tr> <td> <p>Namibia</p> </td> </tr> <tr> <td> <p>Nicaragua</p> </td> </tr> <tr> <td> <p>Niger</p> </td> </tr> <tr> <td> <p>Nigeria</p> </td> </tr> <tr> <td> <p>Paraguay</p> </td> </tr> <tr> <td> <p>Peru</p> </td> </tr> <tr> <td> <p>Rwanda</p> </td> </tr> <tr> <td> <p>Sao Tome and Principe</p> </td> </tr> <tr> <td> <p>Senegal</p> </td> </tr> <tr> <td> <p>Sierra Leone</p> </td> </tr> <tr> <td> <p>South Africa</p> </td> </tr> <tr> <td> <p>Sudan</p> </td> </tr> <tr> <td> <p>Tanzania</p> </td> </tr> <tr> <td> <p>Togo</p> </td> </tr> <tr> <td> <p>Tunisia</p> </td> </tr> <tr> <td> <p>Uganda</p> </td> </tr> <tr> <td> <p>Zambia</p> </td> </tr> <tr> <td> <p>Zimbabwe</p> </td> </tr> </tbody> </table>
Data for: Genetic and context-specific effects on individual inhibitory control performance in the guppy (Poecilia reticulata)
<p>Among-individual variation in cognitive traits, widely assumed to have evolved under adaptive processes, is increasingly being demonstrated across animal taxa. As variation among individuals is required for natural selection, characterising individual differences and their heritability is important to understand how cognitive traits evolve. Here we use a quantitative genetic study of wild-type guppies repeatedly exposed to a 'detour task' to test for genetic variance in the cognitive trait of inhibitory control. We also test for genotype-by-environment interactions (GxE) by testing related fish under alternative experimental treatments (transparent vs. semi-transparent barrier in the detour-task). We find among-individual variation in detour task performance, consistent with differences in inhibitory control. However, analysis of GxE reveals that heritable factors only contribute to performance variation in one treatment. This suggests that the adaptive evolutionary potential of inhibitory control (and/or other latent variables contributing to task performance) may be highly sensitive to environmental conditions. The presence of GxE also implies that the plastic response of detour task performance to treatment environment is genetically variable. Our results are consistent with a scenario where variation in individual inhibitory control stems from complex interactions between heritable and plastic components.</p>
Environmental, sex-specific, and genetic determinants of infant social behavior in a wild primate
<p>Affiliative social bonds are linked to fitness components in many social mammals. However, despite their importance, little is known about how the tendency to form social bonds develops in young animals, or if the timing of development is heritable and thus can evolve. Using four decades of longitudinal observational data from a wild baboon population, we assessed the environmental determinants of an important social developmental milestone in baboons—the age at which a young animal first grooms a conspecific—and we assessed how the rates at which offspring groom their mothers develops during the juvenile period. We found that grooming development differs between the sexes: female infants groom at an earlier age and reach equal rates of grooming with their mother earlier than males. We also found that age at first grooming for both sexes is weakly heritable (h<sup>2</sup> = 0.043, 95% CI: 0.002 – 0.110). These results show that sex differences in grooming emerge at a young age; that strong, equitable social relationships between mothers and daughters begin very early in life; and that age at first grooming is heritable and therefore can be shaped by natural selection.</p>
Molecular Dynamics Simulations and associated data for: Mechanistic and evolutionary insights into isoform-specific 'supercharging' in DCLK family kinases
<p>Catalytic signaling outputs of protein kinases are dynamically regulated by an array of structural mechanisms, including allosteric interactions mediated by intrinsically disordered segments flanking the conserved catalytic domain. The Doublecortin Like Kinases (DCLKs) are a family of microtubule-associated proteins characterized by a flexible C-terminal autoregulatory 'tail' segment that varies in length across the various human DCLK isoforms. However, the mechanism whereby these isoform-specific variations contribute to unique modes of autoregulation is not well understood. Here, we employ a combination of statistical sequence analysis, molecular dynamics simulations and in vitro mutational analysis to define hallmarks of DCLK family evolutionary divergence, including analysis of splice variants within the DCLK1 sub-family, which arise through alternative codon usage and serve to 'supercharge' the inhibitory potential of the DCLK1 C-tail. We identify co-conserved motifs that readily distinguish DCLKs from all other Calcium Calmodulin Kinases (CAMKs), and a 'Swiss-army' assembly of distinct motifs that tether the C-terminal tail to conserved ATP and substrate-binding regions of the catalytic domain to generate a scaffold for auto-regulation through C-tail dynamics. Consistently, deletions and mutations that alter C-terminal tail length or interfere with co-conserved interactions within the catalytic domain alter intrinsic protein stability, nucleotide/inhibitor-binding, and catalytic activity, suggesting isoform-specific regulation of activity through alternative splicing. Our studies provide a detailed framework for investigating kinome–wide regulation of catalytic output through cis-regulatory events mediated by intrinsically disordered segments, opening new avenues for the design of mechanistically-divergent DCLK1 modulators, stabilizers or degraders.</p>
Host-specificity in Scelionid parasitoids: Arrestment, competition, and egg electrophysiology results
<p>This archive contains the raw data from a series of experiments with Trissolcus basalis and Trissolcus oenone to better understand the chemical basis mediating differences in host-specificity between these parasitoids. First, we compared the searching behaviour of T. basalis and T. oenone in open arena arrestment bioassays contaminated with footprint compounds from Nezara viridula and Cuspicona simplex. Trissolcus basalis spent four times longer searching for N. viridula than C. simplex, while T. oenone spent four times longer searching for C. simplex than N. viridula. We then conducted competition experiments to assess factors important to determining the outcomes of extrinsic and intrinsic contests between these parasitoids when they are simultaneously exposed to C. simplex egg masses. Trissolcus oenone, was the superior competitor in extrinsic and intrinsic contests. Finally, we recorded the antennal responses of T. basalis to egg extracts of N. viridula to tentatively identify potential contact kairomones used by this parasitoid to recognise and accept hosts.</p>
Platform-Specific APIs
<p>This dataset was utilized in the research paper titled "Availability and Usage of Platform-Specific APIs: A First Empirical Study" for publication in Mining Software Repositories (MSR). Herein, we present a concise abstract of the study.</p> <p>A platform-specific API is an API implemented for a particular platform (e.g., operating system), therefore, it may not work on other platforms than the target one. In this paper, we propose a first empirical study to assess the availability and usage of platform-specific APIs. We analyze the platform-specific APIs provided by the Python Standard Library and mine their usage in 100 popular systems. We find that 21% of the Python Standard Library APIs are platform-specific and that 15% of the modules contain at least one. The platforms with the most availability restrictions are WASI (43.69%), Emscripten (43.64%), Unix (6,76%), and Windows (2.12%). Moreover, we find that platform-specific APIs are largely used in Python. We detect over 19K API usages in all 100 projects, in both production (52.6%) and test code (47.4%). We conclude by discussing practical implications for practitioners and researchers.</p> <p> </p> <p>For more information: <a href="https://dl.acm.org/doi/10.1145/3643991.3644925">https://dl.acm.org/doi/10.1145/3643991.3644925</a></p>
OS-Specific Tests
<p>This dataset was utilized in the research paper titled "How and Why Developers Implement OS-Specific Tests" in review for publication in The Journal Empirical Software Engineering. Herein, we present a concise abstract of the study.</p> <p>Real-world software systems are often tested in multiple operating systems (OSs). Consequently, developers may need to handle specific OS requirements in tests. For example, different OSs have distinct file path name conventions (e.g., between Windows and Unix), thus, the tests should be adapted to run differently depending on whether the OS is Windows or Unix. <br>In this context, an OS-specific test is a test that identifies the OS it will be executed. OS-specific tests may execute different lines of code of the application depending on the OS they are running. <br>In this paper, we provide the first empirical study to assess OS-specific tests, exploring how and why developers implement this kind of test. This knowledge can be used to understand OS-specific tests and the challenges faced by developers when testing for multiple operating systems. <br>We mine 100 popular Python systems and assess their OS-specific tests both quantitatively and qualitatively. We propose five research questions to assess the frequency, location, target, operations, and reasons. Results: (1) We find that OS-specific tests are common in the Python ecosystem: 56% of the analyzed projects have OS-specific tests and Windows is the most targeted OS. (2) We detect that OS verification happens more frequently in test decorators (65%) than in test code (35%). (3) OS-specific tests target a diversity of code, including file/directory, network, and permission/privilege. (4) Developers may perform multiple operations in OS-specific tests, including call OS-specific API, mock OS-specific object, and suspend execution. (5) We find that OS-specific tests are implemented mostly to overcome unavailable external resources, unsupported standard libraries, and flaky tests. <br>Finally, based on our findings, we discuss practical implications for practitioners and researchers, including the relation of OS-specific tests with test smells, technical debt, and flaky tests. We also discuss the efforts to test on Windows properly and propose a novel refactoring to improve some instances of OS-specific tests.</p>
Community and species-specific responses of coastal birds to COVID-19 "anthropause" in the largest hypersaline lagoon of South America
Open the record for dataset details and reuse information.
Wind energy development can lead to guild-specific habitat loss in boreal forest bats
<p>Forest management rarely considers protecting bats in Fennoscandian regions although all species rely on forest habitat at some point in their annual cycle. This issue is especially evident as wind parks have increasingly been developed inside Fennoscandian forests, against the advice of international bat conservation guidelines. In this study, we aimed to describe and explain bat community dynamics at a Norwegian wind park located in a boreal forest, especially to understand potential avoidance or attraction effects. The bat community was sampled acoustically and described using foraging guilds (short, medium, and long-range echolocators; SRE, MRE, LRE) as well as behavior (commuting, feeding and social calls). Sampling was undertaken at two locations per turbine: (i) the turbine pad and (ii) a paired natural habitat at ground level, as well as from a meteorological tower. We used a recently developed method for camera trapping nocturnal flying insects synchronously with bat acoustic activity. Our results reveal trends in feeding and general bat activity across foraging guilds in relation to insect availability, habitat type, wind, temperature, and seasonality. We show how seasonal patterns in behavior across guilds were affected by habitat type, temperature, and wind. We found that SRE commuting and especially feeding activity was highest in natural habitats, whereas LRE overall activity at habitats more season dependent. We found that nocturnal insect availability was positively correlated with total bat feeding activity throughout the night. Our results provide evidence for both direct and indirect risks to bat communities by wind parks: SRE bat habitat is lost to wind energy infrastructure and LRE bat may have an increased risk of fatality. Our findings provide important insights on seasonal and spatial variability in bat activity, which can inform standardizing monitoring of bats acoustically in boreal forests, at wind parks, and in combination with non-invasive insect monitoring.</p>
High specificity of symbiont-conferred resistance in an aphid-parasitoid field community
<p class="MsoNormal"><span>Host-parasite coevolution is mediated by genetic interactions between the antagonists and may lead to reciprocal adaptation. In the black bean aphid, <em>Aphis fabae fabae</em>, resistance to parasitoids can be conferred by the heritable bacterial endosymbiont <em>Hamiltonella defensa</em>. <em>H. defensa</em> has been shown to be variably protective against different parasitoid species, and different genotypes of the black bean aphid's main parasitoid <em>Lysiphlebus fabarum</em>.<em> </em>However, these results were obtained using haphazard combinations of laboratory-reared insect lines with different origins, making it unclear how representative they are of natural, locally (co)adapted communities. We therefore comprehensively sampled the parasitoids of a natural <em>A. f. fabae</em> population and measured the ability of the five most abundant species to parasitize aphids carrying the locally prevalent <em>H. defensa</em> haplotypes. <em>H. defensa</em> provided resistance only against the dominant parasitoid <em>L. fabarum</em> (70% of all parasitoids), but not against less abundant parasitoids, and resistance to <em>L. fabarum</em> acted in a genotype-specific manner (G × G interactions between <em>H. defensa</em> and <em>L. fabarum</em>). These results confirm that strong species- and genotype-specificity of symbiont-conferred resistance is indeed a hallmark of wild <em>A. f. fabae</em> populations, and they are consistent with symbiont-mediated local adaptation of aphids to parasitoids.</span></p>
Accompanying Data - Nitrogenous Compound Utilization and Production of Volatile Organic Compounds among Commercial Wine Yeasts Highlight Strain-Specific Metabolic Diversity
<p>This repository contains all the data and some of the performed statistical analysis from all the measurements in the following paper: Scott Jr WT, Van Mastrigt O, Block DE, Notebaart RA, Smid EJ. Nitrogenous compound utilization and production of volatile organic compounds among commercial wine yeasts highlight strain-specific metabolic diversity. Microbiology spectrum. 2021 Aug 31;9(1):10-128.</p><p>Please cite: Scott Jr WT, Van Mastrigt O, Block DE, Notebaart RA, Smid EJ. Nitrogenous compound utilization and production of volatile organic compounds among commercial wine yeasts highlight strain-specific metabolic diversity. Microbiology spectrum. 2021 Aug 31;9(1):10-128.</p><p>Contact: Dr. William T. Scott (william.scott@wur.nl) or Dr. Eddy J. Smid (eddy.smid@wur.nl) for more information</p>
Gleaning Euglenozoa-specific DNA polymerases in public single-cell transcriptome data
<p><span>Multiple genes encoding family A DNA polymerases (famA DNAPs), which are evolutionary relatives of DNA polymerase </span><span>I</span><span> (Pol</span><span>I</span><span>) in bacteria and phages, have been found in eukaryotic genomes, and many of these proteins are used mainly in organelles. Among members of the phylum Euglenozoa, distinct types of famA DNAP, Pol</span><span>I</span><span>A, Pol</span><span>I</span><span>BCD+, POP, and eugPolA, have been found. It is intriguing how the suite of famA DNAPs had been established during the evolution of Euglenozoa, but the DNAP data have not been sampled from the taxa that sufficiently represent the diversity of this phylum. In particular, little sequence data were available for basal branching species in Euglenozoa until recently. Thanks to the single-cell transcriptome data from symbiontids and phagotrophic euglenids, we have an opportunity to cover the "hole" in the repertory of famA DNAPs in the deep branches in Euglenozoa. The current study identified 16 new famA DNAP sequences in the transcriptome data from 33 phagotrophic euglenids and two symbiontids, respectively. Based on the new famA DNAP sequences, the updated diversity and evolution of famA DNAPs in Euglenozoa are discussed.</span></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.