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FIG. 15 in Unveiling a hidden diversity: descriptions of nine new species of Ctenorillo Verhoeff, 1942 (Isopoda, Armadillidae) discovered in Brazilian caves and their importance for conservation
FIG. 15. — Ctenorillo cearensis Cardoso & Ferreira, n. sp., paratype (male, 4 mm, ISLA96021): A, uropod, B, pereopod 1; C, pereopod 7; D, pleopod 1 and genital papilla; E, pleopod 2; F, pleopod 3 exopod; G, pleopod 4 exopod; H, pleopod 5 exopod.
FIG. 7 in Unveiling a hidden diversity: descriptions of nine new species of Ctenorillo Verhoeff, 1942 (Isopoda, Armadillidae) discovered in Brazilian caves and their importance for conservation
FIG. 7. — Ctenorillo araguaia Cardoso & Ferreira, n. sp.: A, quartzite outcrops on the Serra das Andorinhas mountain range; B, entrance of the Andorinhas cave, where specimens are found; C, inner portion of the Andorinhas cave; D, habitus in natural condition.
FIG. 27 in Unveiling a hidden diversity: descriptions of nine new species of Ctenorillo Verhoeff, 1942 (Isopoda, Armadillidae) discovered in Brazilian caves and their importance for conservation
FIG. 27. — Habitus of the species of the genus Ctenorillo Verhoeff, 1942 discussed in the present paper: A, Ctenorillo ferrarai Campos-Filho, Araujo & Taiti, 2014; B, Ctenorillo pelado Cardoso & Ferreira, n. sp.; C, Ctenorillo araguaia Cardoso & Ferreira, n. sp.; D, Ctenorillo intertidalis Cardoso & Ferreira, n. sp.; E, Ctenorillo ubajarensis Cardoso & Ferreira, n. sp.; F, Ctenorillo cearensis Cardoso & Ferreira, n. sp.; G, Ctenorillo quiteriensis Cardoso & Ferreira, n. sp.; H, Ctenorillo potiguar Cardoso & Ferreira, n. sp.; I, Ctenorillo iuiuensis n. sp.; J, Ctenorillo jequitinhonha Cardoso & Ferreira, n. sp. Scale bars: 1 mm.
FIG. 14 in Unveiling a hidden diversity: descriptions of nine new species of Ctenorillo Verhoeff, 1942 (Isopoda, Armadillidae) discovered in Brazilian caves and their importance for conservation
FIG. 14. — Ctenorillo cearensis Cardoso & Ferreira, n. sp., holotype (male, 4 mm, ISLA96021): A, habitus, lateral view; B, disposition of dorsal tubercles; C, cephalon, frontal view; D, cephalon, dorsal view; E, epimera 1-3 ventral view; F, pleonites 3-5, uropods and telson, dorsal view; G, antennula; H, antenna; I, right mandible; J, left mandible; K, maxillula; L, maxilla; M, maxilliped. Scale bar: 0.5 mm.
Developmental isoform diversity in the human neocortex informs neuropsychiatric risk mechanisms
<p>RNA splicing is highly prevalent in the brain and has strong links to neuropsychiatric disorders, yet the role of cell-type-specific splicing or transcript-isoform diversity during human brain development has not been systematically investigated. Here, we leveraged single-molecule long-read sequencing to deeply profile the full-length transcriptome of the germinal zone (GZ) and cortical plate (CP) regions of the developing human neocortex at tissue and single-cell resolution. We identified 214,516 unique isoforms, of which 72.6% are novel (unannotated in Gencode-v33), and uncovered a substantial contribution of transcript-isoform diversity, regulated by RNA binding proteins, in defining cellular identity in the developing neocortex. We leveraged this comprehensive isoform-centric gene annotation to re-prioritize thousands of rare de novo risk variants and elucidate genetic risk mechanisms for neuropsychiatric disorders.</p>
FIG. 29 in Unveiling a hidden diversity: descriptions of nine new species of Ctenorillo Verhoeff, 1942 (Isopoda, Armadillidae) discovered in Brazilian caves and their importance for conservation
FIG. 29. — Distribution of Ctenorillo Verhoeff, 1942 species in Brazil, with the delimitation of the plateaus in Carajás Formation. Karstic areas marked in yellow. Abbreviations: BA, Bahia; CE, Ceará; MG, Minas Gerais; PA, Pará; RN, Rio Grande do Norte.
Insights into the genetic diversity of Listeria monocytogenes from bivalves
<p>Fasta files to 30 genomes described in a publication</p>
FIGURE 15 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 15 Light micrographs of Longidorus pini Andrés and Arias, 1988 paratypes from San Martín del Pimpollar, Avila province (A–F), and the population from Nava de Francia, Salamanca province (G–M). A–C, G–I, female anterior regions. D–F, J–K, female tails. L-M, male tail with detail of spicules. Abbreviations: a = anus; gr = guiding ring; sp = spicules; spl = ventromedian supplements. Scale bars = 20 μm
FIGURE 13 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 13 Light micrographs of Longidorus cf. olegi Kankina & Metlitskaya, 1983. (A)–(B) female anterior region. (C)–(F) female lip regions. (G) detail of basal bulb. (H) vulval region. (I)–(L) female tails. (M) and (N), male tail with detail of spicules. (O)–(R) First-, second-, third-, and fourth-stage juvenile (J1–J4) tails, respectively. Abbreviations: a = anus; af = amphidial fovea; gr = guiding ring. Scale bars = 20 μm
FIGURE 14 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 14 Relationship of body length to length of functional and replacement odontostyle (Ost and rOst, respectively) length in all developmental stages from first-stage juveniles (J1) to mature females of Longidorus cf. olegi Kankina & Metlitskaya, 1983
FIGURE 12 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 12 Light micrographs of Longidorus nevesi Macara 1985. (A) female anterior region. (B) female lip region. (C) vulval region. (D) female tail. (E)–(F) male tail with detail of spicules. Abbreviations: a = anus; gr = guiding ring; spl = ventromedian supplements; V = vulva. Scale bars = 20 μm
Figure 11 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
Figure 11 Light micrographs of Longidorus carpetanensis Arias et al., 1986 from Puebla de Sanabria, Zamora (A)–(F), and topotypes from Navalmoral, Avila (G)–(L). A–C, G and H, female anterior regions. D, I, female tails. E and F, J and L, male tail with detail of spicules. Abbreviations: a = anus; gr = guiding ring; spl = ventromedian supplements. Scale bars = 20 µm
FIGURE 9 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 9 Light micrographs of Longidorus pacensis sp. nov. (A)–(G) Anterior regions. (H) Vulval region. (I)–(K) Female tails. (L) Detail of sperm cells. (M) and (N) Male tails. (O)–(R) First-, second-, third-, and fourth-stage juvenile (J1–J4) tails, respectively. Abbreviations: a = anus; af = amphidial fovea; gr = guiding ring; sp = spicules; spl = ventromedian supplements; v = vulva. Scale bars = 20 μm
FIGURE 10 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 10 Light micrographs of Longidorus africanus Merny, 1966. (A) female anterior region. (B) female lip region. (C) vulval region. (D)–(E) female tails. Abbreviations: a = anus; gr = guiding ring; v = vulva. Scale bars = 20 μm
FIGURE 8 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 8 Line drawings of Longidorus pacensis sp. nov. (A) Female neck region. (B) and (C) Female lip regions. (D) and (E) Female tails. (F) Male tail. (G) First-stage juvenile tail
FIGURE 7 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 7 Relationship of body length to length of functional and replacement odontostyle (Ost and rOst, respectively) length in all developmental stages from first-stage juveniles (J1) to mature females of. (A) Longidorus iliturgiensis sp. nov. (B) Longidorus pacensis, sp. nov.
FIGURE 4 Phylogenetic relationships within the genus Longidorus. Bayesian 50 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 4 Phylogenetic relationships within the genus Longidorus. Bayesian 50% majority rule consensus tree as inferred from cytochrome c oxidase subunit I (CoxI) mtDNA gene sequence alignment under the general time-reversible model of sequence evolution with correction for invariable sites and a gammashaped distribution (GTR + I + G). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site.
FIGURE 6 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 6 Light micrographs of Longidorus iliturgiensis, sp. nov. (A)–(D) Anterior regions. (E) Vulval region. (F)–(I) Female tails. (J)–(M) First-, second-, third-, and fourth-stage juvenile (J1–J4) tails, respectively. (N)–(O) Male tail. Abbreviations: a = anus; af = amphidial fovea; spl = ventromedian supplements; v = vulva. Scale bars (A)–(C), (E)–(O) = 20 μm; (D) = 10 μm
FIGURE 5 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 5 Line drawings of Longidorus iliturgiensis, sp. nov. paratypes. (A) Female neck region. (B) and (C) Female lip regions. (D) and (E) Female tails. (F) Male tail. (G) First-stage juvenile tail
FIGURE 3 Phylogenetic relationships within the genus Longidorus. Bayesian 50 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 3 Phylogenetic relationships within the genus Longidorus. Bayesian 50% majority rule consensus tree as inferred from 18S rRNA gene sequence alignment under a transitional model with invariable sites and a gamma correction (TIM 2 + I + G). Posterior probabilities greater Downloaded than 0.70 from are Brill given.comfor08/29/ appropriate 2023 05:44:51PM clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changesvia per site free. access
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.