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Fig. 2 in First report of the nematode Cruzia tentaculata using molluscs as natural intermediate hosts, based on morphology and genetic markers
Fig. 2. Photomicrographs of the Cruzia tentaculata larvae recovered from A. fulica; A) Anterior extremity, showing the excretory pore (ep), bulb, and pre-bulbar dilatation; (a) details of the excretory pore in lateral view; B) Cephalic extremity showing the labial papillae and the teeth (t), apical view; b) Trilabial mouth, apical view; C) Pre-bulbar dilatation (pb) and well developed bulb; D) Lateral lines (arrows), transversal section; E) Posterior extremity, lateral view; (e) detail of the extremity of the tail; F) anus (a), with prominent opening lateral view and a pair of anal glands (arrow).
Fig. 1 in First report of the nematode Cruzia tentaculata using molluscs as natural intermediate hosts, based on morphology and genetic markers
Fig. 1. Line drawings of Cruzia tentaculata recovered from the molluscs in the present study, based on light microscopy. A) side view of the anterior region of a nematode recovered from Achatina fulica; B) side view of the posterior region of a nematode from A. fulica; C) Lateral view of a whole specimen recovered from Latipes erinaceus. Scale bar = 100 μm.
Fig. 1 in Genetic characterisation of cercarial stages of Choanocotyle Jue Sue and Platt, 1998 (Digenea: Choanocotylidae) in a native Australian freshwater snail, Isidorella hainesii (Tryon)
Fig. 1. Cercaria of Choanocotyle hobbsii. A. Ventral view of whole mount. Scale bar 100 μm. B. Stylet. Scale bar 10 μm.
Fig. 1 in Prevalence and genetic diversity of Enterocytozoon bieneusi in nonhuman primates in Northern and Central China
Fig. 1. Phylogenetic tree of E. bieneusi genotypes identified in this study and known genotypes based on the Neighbor-Joining analysis of the internal transcribed spacer of the rRNA gene. The numbers on the branches represent percent bootstrapping values from 500 replicates, with values of>70.0% shown in the tree. The genotypes identified in this study were marked, with △ for known genotypes and ▴ for the novel genotypes.
Fig. 2 in Genetic characterisation of Echinocephalus spp. (Nematoda: Gnathostomatidae) from marine hosts in Australia
Fig. 2. Genetic relationship based on Bayesian Inference analysis of the small subunit nuclear ribosomal DNA (SSU) sequences of Echinocephalus spp. collected form sea snake, stingray and octopus in Australia determined in this study (bold). Nodal support is given as a posterior probability for BI analysis followed by bootstrap values for NJ analysis on this tree. Gnathostoma lamothei (Bertoni-Ruiz et al., 2011) was used as the outgroup, however the GenBank entry for this parasite is with its old name, Gnathostoma neoprocyonis Z96947. The scale bar indicates the number of inferred substitutions per nucleotide site.
Fig. 1. A in Genetic characterisation of Echinocephalus spp. (Nematoda: Gnathostomatidae) from marine hosts in Australia
Fig. 1. A, Anterior end of Echinocephalus larva from Octopus djinda (formerly Octopus O. aff. tetricus), showing six rows of hooks on the cephalic inflation; B, Apical view of the spiniform papillae on the larva from O. djinda, showing a posterior row of three papillae; C, Apical view of the spiniform papillae on the larva from Codakia paytenorum, showing posterior row of three papillae joined by irregular areas of sclerotization. Scale bars: Fig. 1A and 40 μm; Fig. 1B and C, 10 μm.
Fig. 2 in Genetic characterisation of Tanqua (von Linstow, 1879) (Nematoda: Gnathostomatidae) larval forms including new host and locality records
Fig. 2. Larval nematodes identified as Tanqua sp. 2A specimen 674-1 anterior tip (20x); 2B specimen 678-1 showing tooth like projections of pseudolabia (tl) and lateral pseudolabium (lp) (40x); 2C specimen 674-1 posterior trunk (4x) showing annulations (an). and 2D specimen 678-9 tail (20x) respectively showing annulations (an) and anus (as). The circled area in Fig. 2A is indicative of the damage to internal structures which precluded detailed morphological examination.
Fig. 1 in Genetic characterisation of Tanqua (von Linstow, 1879) (Nematoda: Gnathostomatidae) larval forms including new host and locality records
Fig. 1. Phylogenetic tree (of 18S sequences of nematodes) inferred using the Maximum Likelihood Method. The bootstrap values higher than 80 are indicated next to the branches. The new sequences generated from this study are indicated with asterisks.
Fig. 1 in An assessment of ectoparasites across highland and lowland populations of Leadbeater's possum (Gymnobelideus leadbeateri): Implications for genetic rescue translocations
Fig. 1. Fleas detected on the Leadbeater's possum (Gymnobelideus leadbeateri); Stephanocircus domrowi (panel A), Choristopsylla tristis (panel B), Wurunjerria warnekei (panel C), Acanthopsylla rothschildii rothschildii (panel D).
Fig. 1 in Baseline study of the morphological and genetic characteristics of Haemoproteus parasites in wild pigeons (Columba livia) from paddy fields in Thailand
Fig. 1. Haemoproteus columbae from the blood of wild pigeons (Columba livia); cytochrome b lineage HAECOL1 (a–d), COLIV03 (e–f) and COQUI05 (i–l); macrogametocytes (a–b; e–f; i–j) and microgametocytes (c–d; g–h; k–l); simple arrows: nuclei of erythrocytes; short triangle-head arrows: volutin granules; long trianglehead arrows: pigment granules; scale bar = 10 μm.
Fig. 2 in Baseline study of the morphological and genetic characteristics of Haemoproteus parasites in wild pigeons (Columba livia) from paddy fields in Thailand
Fig. 2. Haplotype network of partial cyt b sequence (479 bp) of Haemoproteus columbae from wild pigeons (Columba livia); (A) the three common haplotypes (HAECOL1, COLIV03 and COQUI05) found in this study and proportions between study sites; (B) proportions of each haplotype reported worldwide and in the two study sites; Nakhon Sawan (purple), Phitsanulok (pink), and previous reports (gray); number of sequences shown in a pie chart of the network, without number inside indicates one sequence. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 4 in Co-infection of Echinococcus equinus and Echinococcus canadensis (G6/7) in a gray wolf in Turkey: First report and genetic variability of the isolates
Fig. 4. The haplotype network for the mt-CO1 gene (815 bp) of E. canadensis (G6/7). The size of the circles is proportional to the frequency of each haplotype. The number of mutations separating haplotypes is indicated by dash marks. The host diversity of haplotypes is shown in different colors. Hap: Haplotype.
Fig. 2 in Co-infection of Echinococcus equinus and Echinococcus canadensis (G6/7) in a gray wolf in Turkey: First report and genetic variability of the isolates
Fig. 2. Phylogenetic tree of Echinococcus granulosus s.l. isolates generated using mt-CO1 gene sequences (815 bp). The phylogenetic tree was constructed using the Maximum Likelihood method and TN93 + G model. Evolutionary analyses were conducted in MEGA X. For each reference sequence, the GenBank accession number and species name are listed below: MN787562 (E. equinus), KY766905 (E. equinus), KP161210 (E. equinus) AB786665 (E. equinus) AF346403 (E. equinus), KX010854 (E. canadensis) MK321260 (E. canadensis) KX010856 (E. canadensis), AB893263 (E. canadensis), AB777923 (E. canadensis), MK165232 (E. ortleppi), MT072979 (E. granulosus s.s.), NC_044548 (E. granulosus s.s.), MG672293 (E. granulosus s.s.), KT001423 (E. multilocularis), AY684274 (T. saginata). ■: E. canadensis (G6/7) isolates; ▴: E. equinus isolates.
Fig. 1 in Genetic characterization of Strongyloides fuelleborni infecting free-roaming African vervets (Chlorocebus aethiops sabaeus) on the Caribbean island of St. Kitts
Fig. 1. Schematic of the Strongyloides genotyping scheme referenced here Graphical representation a Strongyloides sp. genotyping scheme after the description of Barratt et al. (Barratt et al., 2019a; Barratt and Sapp, 2020). This scheme was expanded here to include haplotypes XVI and XVII of 18S HVR-I (indicated by a star) identified here from feral vervet monkeys living on the island of St Kitts (GenBank accessions in Table 3). Haplotype names shown in blue belong to S. fuelleborni and those shown in black belong to other Strongyloides species in accordance with this typing scheme. Haplotype sequences are provided in File S1. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 3 in Genetic characterization of Strongyloides fuelleborni infecting free-roaming African vervets (Chlorocebus aethiops sabaeus) on the Caribbean island of St. Kitts
Fig. 3. Neighbor-Joining tree generated from St Kitts S. fuelleborni genotypes and other Strongyloides types This tree was generated by applying the Neighbor-Joining clustering method (Saitou and Nei, 1987) to a pairwise distance matrix computed using Barratt's heuristic from 285 Strongyloides genotypes, including 48 from St. Kitts vervets. Branches are colored according to their cluster membership (A through H) as defined by Ko et al. (2022). We also introduce S. fuelleborni type H (light pink) from St. Kitts vervets, noting that an H-type isolate was found previously in a human from Guinea-Bissau (pink triangle). Divergent S. fuelleborni types described by Ko et al. (2022) were also analyzed (bright green branches without a cluster letter) from Siamang, Douc, and Francois' langur housed in zoological parks in Japan. A version of this same tree with isolate names shown on the branch tips is provided in File S3; Tree B. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 3 in Co-infection of Echinococcus equinus and Echinococcus canadensis (G6/7) in a gray wolf in Turkey: First report and genetic variability of the isolates
Fig. 3. The haplotype network for the mt-CO1 gene (815 bp) of E. equinus. The size of the circles is proportional to the frequency of each haplotype. The number of mutations separating haplotypes is indicated by dash marks. The host diversity of haplotypes is shown in different colors. Hap: Haplotype.
Fig. 2 in Genetic characterization of Strongyloides fuelleborni infecting free-roaming African vervets (Chlorocebus aethiops sabaeus) on the Caribbean island of St. Kitts
Fig. 2. Hierarchical tree of clustered distances generated from genotyped S. fuelleborni from St Kitts vervets and other Strongyloides sp. genotypes This unrooted tree was generated using Wards method (Ward, 1963) to cluster a pairwise distance matrix computed from 285 Strongyloides genotypes, including 48 from St. Kitts vervets. Branches are colored according to their cluster membership (A through H). We introduce S. fuelleborni type H (pink star) identified from St. Kitts vervets, noting that an H-type isolate was found previously in a human from Guinea-Bissau. Colored peripheral bars reflect the host species from which isolates were derived; dog (Do), human (Hu), chimpanzee (Ch), lorises (Lo), long-tailed macaques (Lt), pig-tailed macaques (Pt), Japanese macaques (Jm), proboscis monkeys (Pr), silvered leaf monkeys (Sl), orangutans (Or), Rhesus macaques (Rh), St Kitts (white star) vervets (Ve), gorilla (Go), and baboon (Ba). Divergent S. fuelleborni types described by Ko et al. (2023) were also clustered (green circle and branches) from Siamang (Si), Douc (Do), and Francois' langur (Fr) housed in zoological parks in Japan. The black bar and black star indicate S. stercoralis reference strain PV001. Strongyloides stercoralis types A and B, are shown with red and blue branches respectively. The loris clade is shown in light blue. The S. stercoralis and loris clades clustered here for comparison are shaded in a gray background. A version of this same tree with isolate names shown on the branch tips is provided in File S3; Tree A. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
FIGURE 2 in Development of microsatellite loci and population genetics of the catfish Pimelodus yuma (Siluriformes: Pimelodidae)
FIGURE 2 | Discriminant analysis of principal components for nine microsatellite loci and 138 individuals of Pimelodus yuma in three sections (S4/5, S6 and S7/8) of the Cauca River.
FIGURE 1 in Development of microsatellite loci and population genetics of the catfish Pimelodus yuma (Siluriformes: Pimelodidae)
FIGURE 1 | Studied sampling sites of Pimelodus yuma along the lower sections (S4–S8) of the Cauca River. The pentagons indicate sampling sites in floodplain lakes and the stars indicate sites along the main channel of the river.
FIGURE 2 in Population genetics of the endangered catfish Pseudoplatystoma magdaleniatum (Siluriformes: Pimelodidae) based on species-specific microsatellite loci
FIGURE 2 | Results of Structure (A, B) and Discriminant analysis of principal components (C) for Pseudoplatystoma magdaleniatum. A: K = 1; B: K = 2; M: Margento, PC: Punta Cartagena, PB: Puerto Berrío, SN: Samaná Norte.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.