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788
datasets available to search
ShareScore release 0.9.0
Dataset results
788 results for “genotypic data”
Gene expression and genotype data from human fibroblasts and induced Pluripotent Stem cells from Parkinson's Disease patients
GEO Series GSE53426. Homo sapiens. 14 samples. Type: Expression profiling by array; SNP genotyping by SNP array.
Genotyping data from 120 trios with unexplained mental retardation
GEO Series GSE13117. Homo sapiens. 617 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Expression data from rice genotypes FL478 and IR29
GEO Series GSE13735. Oryza sativa. 11 samples. Type: Expression profiling by array.
Gene expression and SNP genotype data from induced Pluripotent Stem cells from Parkinson's Disease patients harbouring G2019S mutations in the LRRK2 gene
GEO Series GSE77664. Homo sapiens. 12 samples. Type: SNP genotyping by SNP array; Expression profiling by array.
Genome wide genotyping and gene expression data of childhood B-cell precursor ALL without known genetic aberrations
GEO Series GSE10792. Homo sapiens. 160 samples. Type: Expression profiling by array; Genome variation profiling by SNP array; SNP genotyping by SNP array.
Expression data from fully-expanded leaflet of Bambara groundnut genotype (S19-3)
GEO Series GSE72255. Glycine max; Vigna subterranea. 10 samples. Type: Expression profiling by array.
Genotyping data from Phase 2 of the SAMARA study (Supporting a Multi-disciplinary Approach to Researching Atherosclerosis)
GEO Series GSE90073. Homo sapiens. 106 samples. Type: Genome variation profiling by SNP array.
Gene Expression and SNP genotype data from induced Pluripotent Stem cells from healthy control donors
GEO Series GSE99125. Homo sapiens. 6 samples. Type: Expression profiling by array; SNP genotyping by SNP array.
Expression data from Sin3Bp+/-KRaspG12D and Sin3Bp-/-KRaspG12D pancreata and from cultured primary pancreatic duct epithelial cells (PDEC) of the same genotype.
GEO Series GSE54197. Mus musculus. 6 samples. Type: Expression profiling by array.
Tissue specific expression data from maturing wheat seeds (20-50 DAA) of two genotypes
GEO Series GSE83077. Triticum aestivum. 34 samples. Type: Expression profiling by array.
Expression data from Sheep kidney fat (KF) in lambs at 12 weeks of age; comparison of two genotypes, Callipyge (NCpat (CN)) and wild type (NN)
GEO Series GSE58148. Ovis aries; Bos taurus. 8 samples. Type: Expression profiling by array.
Raw ILLUMINA NGS data from study on Mouse virulence of European type III and type II x III-recombinant natural clones of Toxoplasma gondii is not always linked to the ROP18 and ROP5 genotype
<ul> <li>Whole genome sequences of naturally recombinant European type III and type II x III clones were analyzed</li> <li>While two of the type II x III recombinants showed an intermediate mouse virulence, a type III clone was highly virulent </li> <li>Of the three highly virulent clones, only two showed a virulent <em>ROP18</em>-<em>ROP5</em> allele combination</li> <li>The mouse virulent type III clone without virulent <em>ROP18</em>-<em>ROP5</em> allele combination showed the highest level of ROP5 mRNA expression</li> <li>Two genetically similar clones showed apparent differences in virulence and corresponding IL-12 mRNA expression in infected macrophages </li> </ul>
Genotyping data from 54 patients with deficit schizophrenia
GEO Series GSE12714. Homo sapiens. 54 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Expression data from leaflets and roots of the tomato res mutant and its background genotype, wild-type (WT) (Solanum lycopersicum L. cv. Moneymaker), grown in control conditions and salt stress
GEO Series GSE106149. Solanum lycopersicum. 24 samples. Type: Expression profiling by array.
SNP genotype data from induced Pluripotent Stem cells from healthy control donors
GEO Series GSE99124. Homo sapiens. 3 samples. Type: SNP genotyping by SNP array.
Genotype data from induced Pluripotent Stem cells from OPA1 Haploinsufficiency patients
GEO Series GSE94432. Homo sapiens. 8 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Affymetrix SNP array data for cell line and tumor genotype alignment
GEO Series GSE85838. Homo sapiens. 15 samples. Type: Genome variation profiling by genome tiling array; Third-party reanalysis.
SNP genotyping data from human iPSCs and human fibroblast cells
GEO Series GSE61769. Homo sapiens. 4 samples. Type: Genome variation profiling by SNP array.
MASPOT panel GBS genotype data - v6.1 reference
<p>Genotype-by-sequencing data of the MASPOT panel clones (762 clones in total, 755 with phenotypes) generated by Illumina sequencing of leaf tissue cf. (Sverrisdottir et al., 2017). Biallelic variants have been called relative to the v6.1 Phureja double monoploid reference genome. The SNPs have been filtered to root mean square mapping quality of > 30, MAF > 1 %, missing data < 50 %, and minimum reading depth of 5x. This leaves 175435 variants. </p> <p>F1 sample names are in HEADER.SAMPLES, SNP identifyer and coordinates are in FILT3.KEY (both outlined in the new readme.txt. The genotypes are in the SNP_V1.0_DMv6.vcf.FILT3_FINAL.DISC.gz file. The snp_counts.txt is a file of the SNP counts in the full sets of filtration we have computed. For our purpose, we use only the discrete genotypes and the FILT3 filtration in version 1. This has the 175435 variants. </p> <p>The phased MASPOT parent genotypes are in the MASPOT_phased_genome_FILT3_modified_filtered.vcf.gz file. These are the genotype calls for the 18 MASPOT parents, phased to the long read sequencing files using WhatsHap. They are filtered to 1) SNPs passing the quality the FILT3 quality filters, 2) SNPs that are also called for the F1 panel, and 3) SNPs where all parents are phased. The latter, to allow imputation of all offspring. This leaves a subset of 112720 SNPs. </p> <p>Please see the readme.txt file for explanation of the content of each file. </p> <p>For our analysis, we are using the FILT3 filtration settings (outlined above) and discrete scale genotypes. </p>
SNP genotype data from induced Pluripotent Stem cells from Parkinson's Disease patients harboring mutations in the GBA1 gene, and from healthy control donors
GEO Series GSE99471. Homo sapiens. 13 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.