Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2,394
datasets available to search
ShareScore release 0.9.0
Dataset results
2,394 results for “ms”
MALDI-TOF-MS reference spectra and sequence data for African bovid collagen for Zooarchaeology by Mass Spectrometry (ZooMS)
<p>MALDI-TOF-MS spectra of extracted collagen from modern African bovids used as reference spectra to develop markers for Zooarchaeology by Mass Spectrometry (ZooMS). Some of this material was also analyzed by LC-MS/MS. That data can be found at MassIVE MSV000084675 (<a href="https://doi.org/doi:10.25345/C5239K">doi:10.25345/C5239K</a>). Information about the species of the samples can be found in Key for Labels.csv file.</p> <p>The sequence data contains annotated alignments of the proteins COL1A1 and COL1A2 and the alignments for the available bovid collagen protein sequences. More information on these files can be found in the corresponding manuscript to this dataset.</p>
Data from: Rapid species level identification of fish eggs by proteome fingerprinting using MALDI-TOF MS
<p>Quantifying spawning biomass of commercially relevant fish species is important to generate fishing quotas. This will mostly rely on the annual or daily production of fish eggs. However, these have to be identified precisely to species level to obtain a reliable estimate of offspring production of the different species. Because morphological identification can be very difficult, recent developments are heading towards application of molecular tools. Methods such as COI barcoding have long handling times and cause high costs for single specimen identifications. In order to test MALDI-TOF MS, a rapid and cost-effective alternative for species identification, we identified fish eggs using COI barcoding and used the same specimens to set up a MALDI-TOF MS reference library. This library, constructed from two different MALDI-TOF MS instruments, was then used to identify unknown eggs from a different sampling occasion. By using a line of evidence from hierarchical clustering and different supervised identification approaches we obtained concordant species identifications for 97.5% of the unknown fish eggs, proving MALDI-TOF MS a good tool for rapid species level identification of fish eggs. At the same time we point out the necessity of adjusting identification scores of supervised methods for identification to optimize identification success.</p>
Figure 2 from: Glushchenko AM, Kociolek JP, Kuznetsova IV, Kulikovskiy MS (2020) Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam. PhytoKeys 162: 13-27. https://doi.org/10.3897/phytokeys.162.57657
Figure 2 A–FAdlafia lamdongiensis Glushch., Kulik. & Kociolek sp. nov. SEM. Sample no 00269 A–C external views D–F internal views A whole valve. The valve face is flat B central area C valve end D whole valve E central area F valve end. Scale bars: 2 μm (A), 1 μm (D), 0.5 μm (B, C, E, F).
Figure 5 from: Glushchenko AM, Kociolek JP, Kuznetsova IV, Kulikovskiy MS (2020) Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam. PhytoKeys 162: 13-27. https://doi.org/10.3897/phytokeys.162.57657
Figure 5 A–KAdlafia vietnamensis Glushch., Kulik. & Kociolek, sp. nov. LM, DIC, size diminution series. Slides no 00325 (B–K) and 04633 (A). Holotype (G). Scale bar: 10 μm.
Figure 8 from: Glushchenko AM, Kociolek JP, Kuznetsova IV, Kulikovskiy MS (2020) Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam. PhytoKeys 162: 13-27. https://doi.org/10.3897/phytokeys.162.57657
Figure 8 A–FAdlafia dauiensis Glushch., Kulik. & Kociolek, sp. nov. SEM, sample no 00321. A–C external views D, E internal views A whole valve B central area C valve end D whole valve E central area F valve end. Scale bars: 5 μm (A, D), 2.5 μm (B), 1 μm (C, F), 0.5 μm (F).
Figure 4 from: Glushchenko AM, Kociolek JP, Kuznetsova IV, Kulikovskiy MS (2020) Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam. PhytoKeys 162: 13-27. https://doi.org/10.3897/phytokeys.162.57657
Figure 4 A–DAdlafia babeiensis Glushch., Kulik. & Kociolek, sp. nov. A–CSEM, external views D internal views. Sample no 02168. Scale bars: 2 μm (A, C), 1 μm (B, D).
Figure 7 from: Glushchenko AM, Kociolek JP, Kuznetsova IV, Kulikovskiy MS (2020) Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam. PhytoKeys 162: 13-27. https://doi.org/10.3897/phytokeys.162.57657
Figure 7 A–KAdlafia dauiensis Glushch., Kulik. & Kociolek, sp. nov. LM, DIC, size diminution series. Slide no 00321. Holotype (C). Scale bar: 10 μm.
Figure 3 from: Glushchenko AM, Kociolek JP, Kuznetsova IV, Kulikovskiy MS (2020) Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam. PhytoKeys 162: 13-27. https://doi.org/10.3897/phytokeys.162.57657
Figure 3 A–LAdlafia babeiensis Glushch., Kulik. & Kociolek, sp. nov. LM, DIC, size diminution series. Slide no 02168. Holotype (A). Scale bar: 10 μm.
Figure 6 from: Glushchenko AM, Kociolek JP, Kuznetsova IV, Kulikovskiy MS (2020) Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam. PhytoKeys 162: 13-27. https://doi.org/10.3897/phytokeys.162.57657
Figure 6 A–FAdlafia vietnamensis Glushch., Kulik. & Kociolek, sp. nov. SEM, sample no 00325 A–C external views. D, E internal views A whole valve B central area C valve end D whole valve E central area F valve end. Scale bars: 2.5 μm (A, D), 1 μm (B, C, E), 0.5 μm (F).
Figure 1 from: Glushchenko AM, Kociolek JP, Kuznetsova IV, Kulikovskiy MS (2020) Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam. PhytoKeys 162: 13-27. https://doi.org/10.3897/phytokeys.162.57657
Figure 1 A–GAdlafia lamdongiensis Glushch., Kulik. & Kociolek sp. nov. LM, DIC, size diminution series. Slides no 00269 (A–C, E–G) and 03593 (D). Holotype (A). Scale bar: 10 μm.
Figure 2 from: Sampaio FAC, Rufino MS, Pompeu PS, Santos HA, Ferreira RL (2020) Hydraulic flow resistance of epigean and hypogean fish of the family Trichomycteridae (Ostariophysi, Siluriformes). Subterranean Biology 35: 97-110. https://doi.org/10.3897/subtbiol.35.55064
Figure 2 Experimental apparatus for testing fish swimming capacity and resistance to flow: A centrifugal pump which creates the water flow B central testing section C connection for fish entrance to and removal from the central testing section D screens to keep fish in the central testing section E flow rate gauge F frequency converter which was used to change pump rotation and, consequently, the flow velocity in the central testing section G water tank and H water cooler.
Figure 3 from: Sampaio FAC, Rufino MS, Pompeu PS, Santos HA, Ferreira RL (2020) Hydraulic flow resistance of epigean and hypogean fish of the family Trichomycteridae (Ostariophysi, Siluriformes). Subterranean Biology 35: 97-110. https://doi.org/10.3897/subtbiol.35.55064
Figure 3 Relationship between absolute critical speed (ln) and total length and standard length, for T. itacarambiensis.
Figure 4 from: Wisitrassameewong K, Park MS, Lee H, Ghosh A, Das K, Buyck B, Looney BP, Caboň M, Adamčík S, Kim C, Kim CS, Lim YW (2020) Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29. https://doi.org/10.3897/mycokeys.75.53673
Figure 4 Basidiospores with scanning electron microscopy images (A, C, E) and drawing images (B, D, F) A, BRussula bella (SFC20170819-05) C, DR. orientipurpurea; (SFC20170821-22b) E, FRussula sp. (SFC20160726-13). Scale bars: 2 µm.
Figure 7 from: Wisitrassameewong K, Park MS, Lee H, Ghosh A, Das K, Buyck B, Looney BP, Caboň M, Adamčík S, Kim C, Kim CS, Lim YW (2020) Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29. https://doi.org/10.3897/mycokeys.75.53673
Figure 7 Microscopic features of Russula sp. (SFC20160726-13) A basidia B basidiola C clavate marginal cells D hymenial cystidia on lamellae sides E subulate marginal cells F hyphal termination at pileus margin G hyphal termination at pileus centre. Scale bars: 10 µm.
Figure 3 from: Wisitrassameewong K, Park MS, Lee H, Ghosh A, Das K, Buyck B, Looney BP, Caboň M, Adamčík S, Kim C, Kim CS, Lim YW (2020) Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29. https://doi.org/10.3897/mycokeys.75.53673
Figure 3 Basidiomes of Korean Amoeninae from this study. A, BRussula bella (A-SFC20170802-03, B-SFC20170819-05) C–ER. orientipurpurea (SFC20170819-08) F, GRussula sp. (SFC20160726-13). Scale bars: 20 mm.
Supplementary material 2 from: Wisitrassameewong K, Park MS, Lee H, Ghosh A, Das K, Buyck B, Looney BP, Caboň M, Adamčík S, Kim C, Kim CS, Lim YW (2020) Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29. https://doi.org/10.3897/mycokeys.75.53673
Table S2. Sequences used for the ITS analyses in this study
Figure 6 from: Wisitrassameewong K, Park MS, Lee H, Ghosh A, Das K, Buyck B, Looney BP, Caboň M, Adamčík S, Kim C, Kim CS, Lim YW (2020) Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29. https://doi.org/10.3897/mycokeys.75.53673
Figure 6 Microscopic features of Russula orientipurpurea (SFC20170725-37) A basidia B basidiola C clavate marginal cells D hymenial cystidia on lamellae sides E subulate marginal cells F hyphal termination at pileus margin G hyphal termination at pileus centre. Scale bars: 10 µm.
Figure 5 from: Wisitrassameewong K, Park MS, Lee H, Ghosh A, Das K, Buyck B, Looney BP, Caboň M, Adamčík S, Kim C, Kim CS, Lim YW (2020) Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29. https://doi.org/10.3897/mycokeys.75.53673
Figure 5 Microscopic features of Russula bella (SFC20170819-05) A basidia B basidiola C clavate marginal cells D hymenial cystidia on lamellae sides E subulate marginal cells F hyphal termination at pileus margin G hyphal termination at pileus centre. Scale bars: 10 µm.
Figure 1 from: Wisitrassameewong K, Park MS, Lee H, Ghosh A, Das K, Buyck B, Looney BP, Caboň M, Adamčík S, Kim C, Kim CS, Lim YW (2020) Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29. https://doi.org/10.3897/mycokeys.75.53673
Figure 1 Maximum Likelihood (ML) tree based on internal transcribed spacer (ITS) sequences of most Russula subsect. Amoeninae and closely related species. Species in boldface are described in this study. ML bootstrap values >70 and Bayesian Inference posterior probability >0.90 are shown. Stars indicate clades with 100 ML bootstrap values and 1.0 Bayesian posterior probabilities.
Figure 2 from: Wisitrassameewong K, Park MS, Lee H, Ghosh A, Das K, Buyck B, Looney BP, Caboň M, Adamčík S, Kim C, Kim CS, Lim YW (2020) Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29. https://doi.org/10.3897/mycokeys.75.53673
Figure 2 Maximum Likelihood (ML) tree based on the second largest subunit of RNA polymerase II (rpb2), mitochondrial small subunit ribosomal DNA region (mtSSU), and the translation elongation factor 1-alpha (tef1α) sequences of Russula subsect. Amoeninae species and representatives from closely related subgenera. Species in boldface are described in this study. ML bootstrap values >70 and Bayesian Inference posterior probability >0.90 are shown. Stars indicate clades with 100 ML bootstrap values and 1.0 Bayesian posterior probabilities.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.