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2,390 results for “rainforests”
Data from: Persistence in peripheral refugia promotes phenotypic divergence and speciation in a rainforest frog
It is well established from the fossil record and phylogeographic analyses that late Quaternary climate fluctuations led to substantial changes in species' distribution, but whether and how these fluctuations resulted in phenotypic divergence and speciation is less clear. This question can be addressed through detailed analysis of traits relevant to ecology and mating within and among intraspecific lineages that persisted in separate refugia. In a biogeographic system (the Australian Wet Tropics, AWT) with a well-established history of refugial isolation during Pleistocene glacial periods, we test whether climate-mediated changes in distribution drove genetic and phenotypic divergence in the rainforest frog, Cophixalus ornatus. We combine paleomodeling and multilocus genetics to demonstrate long-term persistence within, and isolation among, one central and two peripheral refugia. In contrast to other AWT vertebrates, the three major lineages differ in ecologically relevant morphology and in mating call, reflecting divergent selection and/or genetic drift in the peripheral isolates. Divergence in mating call, and contact zone analyses, suggest that the lineages now represent distinct species. The results show that climate shifts can promote genetic and phenotypic divergence, and potentially speciation, and direct attention towards incorporating adaptive traits into phylogeographic studies to better resolve the mechanisms of speciation.
Data from: Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers
The evolutionary history of the human pygmy phenotype (small body size), a characteristic of African and Southeast Asian rainforest hunter-gatherers, is largely unknown. Here we use a genome-wide admixture mapping analysis to identify 16 genomic regions that are significantly associated with the pygmy phenotype in the Batwa, a rainforest hunter-gatherer population from Uganda (east central Africa). The identified genomic regions have multiple attributes that provide supporting evidence of genuine association with the pygmy phenotype, including enrichments for SNPs previously associated with stature variation in Europeans and for genes with growth hormone receptor and regulation functions. To test adaptive evolutionary hypotheses, we computed the haplotype-based integrated haplotype score (iHS) statistic and the level of population differentiation (FST) between the Batwa and their agricultural neighbors, the Bakiga, for each genomic SNP. Both |iHS| and FST values were significantly higher for SNPs within the Batwa pygmy phenotype-associated regions than the remainder of the genome, a signature of polygenic adaptation. In contrast, when we expanded our analysis to include Baka rainforest hunter-gatherers from Cameroon and Gabon (west central Africa) and Nzebi and Nzime neighboring agriculturalists, we did not observe elevated |iHS| or FST values in these genomic regions. Together, these results suggest adaptive and at least partially convergent origins of the pygmy phenotype even within Africa, supporting the hypothesis that small body size confers a selective advantage for tropical rainforest hunter-gatherers but raising questions about the antiquity of this behavior.
Data from: Persistent anthrax as a major driver of wildlife mortality in a tropical rainforest
Anthrax is a globally significant animal disease and zoonosis. Despite this, current knowledge of anthrax ecology is largely limited to arid ecosystems, where outbreaks are most commonly reported. We reveal cryptic the dynamics of an anthrax causing agent, Bacillus cereus biovar anthracis, in a tropical rainforest with severe consequences for local wildlife communities. Using data and samples collected over three decades we found that rainforest anthrax is a persistent and widespread cause of death for a broad range of mammalian hosts. We predict that this pathogen will accelerate the decline and possibly result in the extirpation of local chimpanzee (Pan troglodytes verus) populations. Our findings illuminate the epidemiology of a cryptic pathogen and have important implications for conservation and public health.
Data from: Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in Southeast Asia
Tropical rainforests in Southeast Asia have been affected by climatic fluctuations during past glacial eras. To examine how the accompanying changes in land areas and temperature have affected the genetic properties of rainforest trees in the region, we investigated the phylogeographic patterns of a widespread dipterocarp species, Shorea leprosula. Two types of DNA markers were used: expressed sequence tag-based simple sequence repeats (EST-SSRs) and chloroplast DNA (cpDNA) sequence variations. Both sets of markers revealed clear genetic differentiation between populations in Borneo and those in the Malay Peninsula and Sumatra (Malay/Sumatra). However, in the southwestern part of Borneo genetic admixture of the lineages was observed in the two marker types. Coalescent simulation based on cpDNA sequence variation suggested that the two lineages arose 0.28 to 0.09 million years before present, and that following their divergence migration from Malay/Sumatra to Borneo strongly exceeded migration in the opposite direction. We conclude that the genetic structure of S. leprosula was largely formed during the middle Pleistocene and was subsequently modified by eastward migration across the subaerially exposed Sunda Shelf.
Data from: Effects of Pleistocene climate change on genetic structure and diversity of Shorea macrophylla in Kalimantan rainforest
The island of Borneo is the diversity center of the Dipterocarpaceae, the most important family of tropical rainforest trees in Southeast Asia. However, changes in land use and climate have affected dipterocarp distributions on the island, raising concerns about the vulnerability (inter alia) of the endemic riparian species Shorea macrophylla. Thus, to aid conservation efforts we have investigated the genetic diversity, structure and demographic history of S. macrophylla. The species' genetic diversity and structure in Kalimantan (part of Indonesia, covering 75% of the island) was explored by examining genotypes of 377 individuals representing 13 populations in three regions (Northeast, Central and West Kalimantan) using 14 newly developed microsatellite loci. Higher genetic diversity was found, at all loci, in samples from Northeast Kalimantan than in samples from the other regions. Moderate genetic differentiation between populations was detected (FST: 0.093). Bayesian clustering, principal coordinate, and neighbor joining tree analysis of the population structure consistently identified two genetically distinct groups, one in the Northeast and the other in the Central and West regions. The higher diversity of the diverged populations in Northeast Kalimantan indicates that the region may have hosted rainforest refugia during the ice age. Accordingly, analysis using DIY ABC software indicated that the Northeast and Central-West Kalimantan groups diverged 194 000 years ago. We conclude that global climate change during the Pleistocene strongly influenced the genetic diversity and structure of S. macrophylla populations in Kalimantan.
Data from: Drivers of tropical rainforest composition and alpha diversity patterns over a 2,520 m altitudinal gradient
We determined the relationship of forest composition and alpha diversity (species diversity of a local assemblage) to altitude, soil and spatial factors over a 440 - 2950 ma.s.l gradient. Altitudinal gradient on the Atlantic slope of the Talamanca Cordillera, Costa Rica. We measured and identified all stems > 10 cm dbh in 32 0.25-ha undisturbed rain forest plots over the gradient. We determined compositional patterns using Non-Metric Multidimensional Scaling (NMS) ordination, and used linear regressions to explore the relationship between four alpha diversity metrics and altitude. With variation partitioning (VARPART) we determined the compositional variation explained by altitude, soil and spatial variables quantified using Principle Components of Neighbour matrices. We identified 425 species. NMS axis 1 separated a lowland zone (440-1120 m asl) from a transitional one dominated by holarctic Oreomunnea mexicana (1400-1600 m asl) and Quercus-dominated forests at altitudes >2100 m asl. The lowland zone was separated into two clusters of plots on NMS axis 2, the first in the 430-620 m asl range and the second at 1000-1120 masl. . Regressions showed that alpha diversity metrics were strongly negatively related to altitude (R2>0.78). Overall adjusted R2 from VARPART was 0.43, with 0.30, 0.21 and 0.17 for altitude, soil and space respectively. The respective adjusted R2 of individual matrices, on controlling for the other two, were 0.06, 0.05 and 0.09 (p<0.001). There are two well-defined forest compositional zones on this gradient – lowlands and montane forests – with a transitional zone at 1400-1600 m asl where lowland tropical and montane holarctic species are found together. Montane forests are very distinct in their composition and low alpha diversity. Vegetation and soil respond to altitude, and therefore temperature, as an integrated system, a model that goes beyond niche assembly as shown by the significant effect of space in the VARPART.
Data from: Two new species of long-fingered frogs of the genus Cardioglossa (Anura: Arthroleptidae) from Central African rainforests
We describe two new frog species of Cardioglossa (Family Arthroleptidae) from Central Africa. The new species are found in the rainforests of western-central Democratic Republic of the Congo and the Republic of the Congo near the Gabonese border, respectively. We demonstrate that these species are morphologically and genetically distinct from each other and all other species of Cardioglossa. Both new species lack the dorsal hour-glass pattern present in many species of the genus, but they can be distinguished from each other and related species by distinctive colour patterns on their lateral surfaces and extremities. Both new species most closely resemble C. gratiosa, which occurs in the Atlantic coastal forests extending from Cameroon through Gabon. The new species can be differentiated from C. gratiosa by the absence of black transverse bars on all limbs or by distinctive lateral colouration. Analysis of mitochondrial ribosomal 16S DNA sequences reveals low to moderate levels (1.9–7.5%) of divergence between these new species and closely related species of Cardioglossa. The floodplains of the Congo and Ubangi Rivers may be important geographic barriers for many of these species. The occurrence of these two new lowland species in the Congo Basin reveals that the distribution and diversity of Cardioglossa in this region was underestimated. In addition, we elevate C. nigromaculata inornata to species-level status, based in part on newly available colour photographs from 1950 of specimens from the only known locality.
Data from: Flying between raindrops: strong seasonal turnover of several Lepidoptera groups in lowland rainforests of Mount Cameroon
1. Although seasonality in the tropics is often less pronounced than in temperate areas, tropical ecosystems show seasonal dynamics as well. Nevertheless, individual tropical insects' phenological patterns are still poorly understood, especially in the Afrotropics. To fill this gap, we investigated biodiversity patterns of Lepidoptera communities at three rainforest localities in the foothills of Mount Cameroon, West Africa, one of the wettest places in the world. 2. Our multi-taxa approach covered six lepidopteran groups (fruit-feeding butterflies and moths, the families Sphingidae, Saturniidae, and Eupterotidae, and the subfamily Arctiinae of Erebidae) with diverse life strategies. We sampled adults of the focal groups in three distinct seasons. Our sampling included standardised bait-trapping (80 traps exposed for ten days per locality and season) and attraction by light (six full nights per locality and season). 3. Altogether, our dataset comprised 20,576 specimens belonging to 559 (morpho)species of the focal groups. The biodiversity of Lepidoptera generally increased in the high-dry season, and either increased (fruit-feeding moths, Arctiinae, Saturniidae) or decreased (butterflies, Sphingidae) in the transition to the wet season in particular groups. Simultaneously, we revealed a strong species turnover of fruit-feeding Lepidoptera and Arctiinae among the seasons, indicating relatively high specialisation of these communities for particular seasons. 4. Such temporal specialisation can make the local communities of butterflies and moths especially sensitive to the expected seasonal perturbations caused by the global change. Because of the key role of Lepidoptera across trophic levels, such changes in their communities could strengthen this impact on entire tropical ecosystems.
Data from: Moving like a model: mimicry of hymenopteran flight trajectories by clearwing moths of Southeast Asian rainforests
Clearwing moths are known for their physical resemblance to hymenopterans, but the extent of their behavioural mimicry is unknown. We describe zigzag flights of sesiid bee mimics which are nearly indistinguishable from those of sympatric bees, whereas sesiid wasp mimics display faster, straighter flights more akin to those of wasps. In particular, the flight of the sesiids Heterosphecia pahangensis, Aschistophleps argentifasciata and Pyrophleps cruentata resembles both Tetragonilla collina and T. atripes stingless bees and, to a lesser extent, dwarf honey bees Apis andreniformis, whereas the sesiid Pyrophleps sp. resembles Tachysphex sp. wasps. These findings represent the first experimental evidence for behavioural mimicry in clearwing moths.
Data from: Distance-decay differs among vertical strata in a tropical rainforest
1. Assemblage similarity decays with geographic distance—a pattern known as the distance-decay relationship. While this pattern has been investigated for a wide range of organisms, ecosystems, and geographical gradients, whether these changes vary more cryptically across different forest strata (from ground to canopy) remains elusive. 2. Here, we investigated the influence of ground vs arboreal assemblages to the general distance-decay relationship observed in forests. We seek to explain differences in distance-decay relationships between strata in the context of the vertical stratification of assemblage composition, richness, and abundance. 3. We surveyed for a climate sensitive model organism, amphibians, across vertical rainforest strata in Madagascar. For each tree, we defined assemblages of ground-dwelling, understory, or canopy species. We calculated horizontal distance-decay in similarity across all trees, and across assemblages of species found in different forest strata (ground, understory, and canopy). 4. We demonstrate that within stratum comparisons exhibit a classic distance-decay relationship for canopy and understory communities but no distance-decay relationships for ground communities. We suggest that differences in horizontal turnover between strata may be due to local scale habitat and resource heterogeneity in the canopy, or the influence of arboreal traits on species dispersal and distribution. 5. Synthesis: Biodiversity patterns in horizontal space were not consistent across vertical space, suggesting that canopy fauna may not play by the same set of 'rules' as their conspecifics living below them on the ground. Our study provides compelling evidence that the above-ground amphibian assemblage of tropical rainforests is the primary driver of the classical distance-decay relationship.
Elevational contrast in predation and parasitism risk to caterpillars in a tropical rainforest
<p>Invertebrate predators and parasitoids are among the most important natural enemies of insect herbivores. Yet, the strength of natural enemy pressure along an altitudinal gradient and interactions between groups of natural enemies (such as predation on parasitized prey) are not well known. Various methods are used to reveal mortality factors of herbivores. Predation pressure is usually assessed through exposure of artificial prey. However, this method cannot provide information about the attacks of parasitoids, or their eventual interactions with predators. Further, artificial or dead prey might not attract predators because they do not show expected host behavior, and this method mostly cannot distinguish between predation and scavenging. For the first time in a tropical rainforest, we quantified mortality factors along an altitudinal gradient using exposure of live caterpillars. We exposed a total of 800 live caterpillars of <i>Talanga excelsalis moresbyensis</i> Strand (Lepidoptera: Crambidae) on saplings of <i>Ficus copiosa</i> Steud. (Moraceae) at two elevations in primary tropical rain forest in Papua New Guinea (200 and 1 200 m a.s.l.). We exposed the caterpillars in two treatments: exposed to and protected from invertebrate predators and parasitoids. Disappearance of caterpillars was significantly higher in the exposed treatment. Further, caterpillar disappearance was significantly higher in lowlands than in highlands (43 vs. 12%). We consider the vast majority of the disappearance to be due to predation, as migration of the caterpillars from the focal trees was not observed (except one caterpillar). This estimate of invertebrate predation rate corresponds with studies which used artificial caterpillar models. No significant difference in parasitism rate between the two elevations was observed (12 vs. 13%). The combination of the disappearance and parasitism rate patterns means that larval parasitoids face stronger pressure from invertebrate predators through higher predation of their hosts in the lowlands than in the highlands.</p>
Data from: Diversity in tropical ecosystems: the species richness and turnover of moths in Malaysian rainforests
As a contribution to accurate estimation of arthropod alpha and beta diversities in tropical forests, we present results of some of the largest moth samples ever collected in the Malaysian region. To estimate alpha diversity, light traps were run at three geographically distinct locations. We generated individual-based and coverage-based rarefaction curves to estimate sampling sufficiency and alpha diversity of the locations. Despite a large number of moths collected (67 282 individuals, from three locations), none of the rarefaction curves reached asymptote. The species accumulation curves based on the Chao1 richness estimator at each location suggested that, even when sampling yielded over 30 000 individuals, Chao1 could not reliably estimate the observed number of species. In one of the three locations, moths were collected systematically by light traps in 1979–1980 and 2000–2001. Despite over 160 trapping nights and 16 500 individuals collected in total, the estimated total number of species (2262) was well below the general collection conducted at the same location over a 35-year period [3921 species (1975–2013)]. Beta diversity was investigated using the samples collected at one location on two occasions over a 20-year period. The faunal composition has changed over the 20-year period, possibly as a result of extensive land-use change around the study location. We estimated the minimum sampling effort required to detect such changes by calculating type II errors. Unlike alpha diversity estimation, we found that only four replicate samples, each with only two trapping nights, would be sufficient to reliably detect changes in assemblage composition.
Data from: Foraging impacts of Asian megafauna on tropical rainforest structure and biodiversity
Megaherbivores are known to influence the structure, composition, and diversity of vegetation. In Central Africa, forest elephants act as ecological filters by breaking tree saplings and stripping them of foliage. Much less is known about impacts of megafauna on Southeast Asian rain forests. Here, we ask whether herbivory by Asian megafauna has impacts analogous to those of African forest elephants. To answer this, we studied forest (1) structure, (2) composition, (3) diversity, and (4) tree scars in Belum and Krau, two protected areas of Peninsular Malaysia, and compared the results with those obtained in African forests. Elephants are abundant in Belum but have been absent in Krau since 1993. We found that stem density and diversity, especially of tree saplings, were higher in Krau than in Belum. Palms and other monocots were also more abundant in Krau. In Belum, however, small monocots (<1 m tall) were very abundant but larger ones (>1 m tall) were virtually absent, suggesting size-selective removal. The frequency of stem-break scars was equal at Belum and Krau but less than in Central Africa and greater than in the Peruvian Amazon where tapirs are the only megafauna. Pigs and tapirs could also contribute to the high frequency of tree scars recorded in Malaysian forests. Forest-dwelling elephants in Asia seem to have a reduced impact on tree saplings compared to African forest elephants, but a very strong impact on monocots.
Data from: Sex-biased dispersal at different geographical scales in a cooperative breeder from fragmented rainforest
Dispersal affects both social behavior and population structure and is therefore a key determinant of long-term population persistence. However, dispersal strategies and responses to spatial habitat alteration may differ between sexes. Here we analyzed spatial and temporal variation in ten polymorphic microsatellite DNA loci of male and female Cabanis's greenbuls (Phyllastrephus cabanisi), a cooperative breeder of Afrotropical rainforest, to quantify rates of gene flow and fine-grained genetic structuring within and among fragmented populations. We found genetic evidence for female-biased dispersal at small spatial scales, but not at the landscape level. Local autocorrelation analysis provided evidence of positive genetic structure within 300 m distance ranges, which is consistent with behavioral observations of short-distance natal dispersal. At a landscape scale, individual-based autocorrelation values decreased over time while levels of admixture increased, possibly indicating increased gene flow over the past decade.
Data from: Primary rainforest amount at the landscape scale mitigates bird biodiversity loss and biotic homogenization
1.Tropical conservation strategies traditionally focus on large tracts of pristine forests, but given rapid primary forest decline, understanding the role of secondary forest remnants for biodiversity maintenance is critical. Until now, the interactive effects of changes in forest amount, configuration and disturbance history (secondary vs. primary forest) on the conservation value of tropical landscapes has remained unknown, hampering the incorporation of these global change drivers into local and global conservation planning. 2.We disentangled effects of landscape wide forest amount, fragment size, and forest age (old growth versus secondary forest) on abundance, α-diversity, β-diversity (biotic homogenisation) and community shifts of bird communities in human-dominated landscapes of southern Costa Rica. Utilizing two complementary methods, yielding 6900 individual detections and 223 species, we characterized bird communities in 49 forest fragments representing independent gradients in fragment size (<5 ha vs >30 ha) and forest amount (5%-80%) in the surrounding landscape (within 1000 m). 3.Abundance and α-diversity of forest specialists and insectivores declined by half in small fragments, but only in landscapes with little old growth forest. Conversely, secondary forest at the landscape scale showed no such compensation effect. Similarly, a null-model approach indicated significant biotic homogenisation in small versus large fragments, but only in landscapes with little old growth forest, suggesting forest amount and configuration interactively affect β-diversity in tropical human-dominated landscapes. Finally, dramatic abundance-based community shifts relative to intact forests are largely a result of landscape-scale loss of old growth rather than changes in overall forest cover. 4.Policy implications. Our study provides strong evidence that retaining old growth within tropical human modified landscapes can simultaneously curb erosion of avian forest specialist α-diversity, mitigate collapse of β-diversity (biotic homogenisation) and dampen detrimental avian community shifts. However, secondary forests play, at best, a subordinate role to mitigate these processes. To maintain tropical forest biodiversity, retaining old growth forest within landscapes should be first priority, highlighting a land-sparing approach.
Data from: On the fate of seasonally plastic traits in a rainforest butterfly under relaxed selection
Many organisms display phenotypic plasticity as adaptation to seasonal environmental fluctuations. Often, such seasonal responses entails plasticity of a whole suite of morphological and life-history traits that together contribute to the adaptive phenotypes in the alternative environments. While phenotypic plasticity in general is a well-studied phenomenon, little is known about the evolutionary fate of plastic responses if natural selection on plasticity is relaxed. Here, we study whether the presumed ancestral seasonal plasticity of the rainforest butterfly Bicyclus sanaos (Fabricius, 1793) is still retained despite the fact that this species inhabits an environmentally stable habitat. Being exposed to an atypical range of temperatures in the laboratory revealed hidden reaction norms for several traits, including wing pattern. In contrast, reproductive body allocation has lost the plastic response. In the savannah butterfly, B. anynana (Butler, 1879), these traits show strong developmental plasticity as an adaptation to the contrasting environments of its seasonal habitat and they are coordinated via a common developmental hormonal system. Our results for B. sanaos indicate that such integration of plastic traits – as a result of past selection on expressing a coordinated environmental response – can be broken when the optimal reaction norms for those traits diverge in a new environment.
Data from: Tropical rainforest conversion and land-use intensification reduce understory plant phylogenetic diversity
1. Conversion of rainforest into agricultural land affects multiple facets of tropical plant diversity. While the effects of tropical land use change and intensification on species diversity are comparatively well studied, the effects on phylogenetic diversity and structure of plant communities are largely unknown. Furthermore, it is not clear how the loss of native species and addition of alien species collectively affect phylogenetic diversity and structure. 2. We investigated the phylogenetic diversity and structure of understorey plants; a diverse and ecologically important, yet poorly studied group. We studied four prominent land use systems (tropical lowland rainforest, jungle rubber agroforest, rubber plantations and oil palm plantations) in the lowlands of Sumatra (Indonesia), a region experiencing dramatic land use changes. 3. Across the four systems, we investigated differences in four metrics of phylogenetic community structure (phylogenetic diversity, mean pairwise distance, mean nearest taxon distance and their abundance-weighted variants). Our analyses were based on a comprehensive vegetation survey consisting of 32 plots, 1,197 species of vascular plants, and 146,599 plant individuals. 4. Our results showed that forest conversion into agricultural systems leads to a pronounced loss of phylogenetic diversity. Furthermore, the standard effect size of mean pairwise distance indicated a gradual change from clustered to overdispersed phylogenetic community structure with increasing land use intensity from forest over jungle rubber to the monoculture plantations. In most land use systems, the presence or absence of alien plant species did not affect phylogenetic structure. Only in oil palm plantations, removing alien species from the data led to a more overdispersed structure. In conclusion, conserving the phylogenetic diversity and structure requires efficient protection of the last remaining rainforests. 5. Synthesis and applications. Forest conversion into agricultural areas negatively affects phylogenetic understorey plant diversity and leads to a shift from clustered to overdispersed phylogenetic community structure. These trends are partly driven by alien species particularly in oil palm plantations. Protecting the remaining rainforests, and considering multi-species agroforestry systems in favour of intensive monoculture plantations are thus imperative to conserve phylogenetic plant diversity and community structure.
Data from: Genetic differentiation in spite of high gene flow in the dominant rainforest tree of southeastern Australia, Nothofagus cunninghamii
Nothofagus cunninghamii is a long-lived, wind-pollinated tree species that dominates the cool temperate rainforests of southeastern Australia. The species' distribution is more or less continuous in western Tasmania but is fragmented elsewhere. However, it is unknown whether this fragmentation has affected the species' genetic architecture. Thus, we examined N. cunninghamii using 12 nuclear microsatellites and 633 individuals from 18 populations spanning the species' natural range. Typical of wind-pollinated trees, there was low range-wide genetic structure (FST=0.04) consistent with significant gene flow across most of the species' range. However, gene flow was not high enough to overcome the effects of drift across some disjunctions. Victorian populations (separated from Tasmania by the 240 km wide Bass Strait) formed a genetic group distinct from Tasmanian populations, had lower diversity (mean allelic richness (Ar)=5.4 in Victoria versus 6.9 in Tasmania) and were significantly more differentiated from one another than those in Tasmania (FST=0.045 in Victoria versus 0.012 in Tasmania). Evidence for bottlenecking was found in small populations that were at least 20 km from other populations. Interestingly, we found little divergence in microsatellite markers between the extremes of genetically based morphological and physiological altitudinal clines suggesting adaptive differentiation is strongly driven by selection because it is likely to be occurring in the presence of gene flow. Even though the cool temperate rainforests of Australia are highly relictual, the species is relatively robust to population fragmentation due to high levels of genetic diversity and gene flow, especially in Tasmania.
Data from: Nutrient scarcity strengthens soil fauna control over leaf litter decomposition in tropical rainforests
Soil fauna is a key control of the decomposition rate of leaf litter, yet its interactions with litter quality and the soil environment remain elusive. We conducted a litter decomposition experiment across different topographic levels within the landscape replicated in two rainforest sites providing natural gradients in soil fertility to test the hypothesis that low nutrient availability in litter and soil increases the strength of fauna control over litter decomposition. We crossed these data with a large dataset of 44 variables characterizing the biotic and abiotic microenvironment of each sampling point and found that microbe-driven Carbon (C) and Nitrogen (N) losses from leaf litter were 10.1 and 17.9 % lower, respectively, in the nutrient-poorest site but this among-site difference was equalized when meso- and macrofauna had access to the litterbags. Further, on average soil fauna enhanced the rate of litter decomposition by 22.6%, and this contribution consistently increased as nutrient availability in the microenvironment declined. Our results indicate that nutrient scarcity increases the importance of soil fauna on C and N cycling in tropical rainforests. Further, soil fauna is able to equalize differences in microbial decomposition potential thus buffering to a remarkable extent nutrient shortages at an ecosystem level.
Data from: Strong selection against hybrids maintains a narrow contact zone between morphologically cryptic lineages in a rainforest lizard
Phenotypically cryptic lineages comprise an important yet understudied part of biodiversity; in particular, we have much to learn about how these lineages are formed and maintained. To better understand the evolutionary significance of such lineages, we studied a hybrid zone between two morphologically-cryptic phylogeographic lineages in the rainforest lizard, Lampropholis coggeri. Analyzing a multilocus genetic dataset through cline inference, individual-based methods and population measures of disequilibrium and using simulations to explore our genetic results in context of theoretical expectations, we inferred the processes maintaining this hybrid zone. We find that these lineages meet in a hybrid zone that is narrow (~400 m) relative to inferred dispersal rate. Further, the hybrid zone exhibits substantial genetic disequilibrium and sharply coincident and largely concordant clines. Based on our knowledge about the region's biogeography, the species' natural history, and our simulation results, we suggest that strong selection against hybrids structures this system. As all clines show a relatively narrow range of introgression, we posit that this hybrid zone might not yet be in equilibrium. Nonetheless, our results clearly show that phylogeographic lineages can evolve substantial reproductive isolation without concomitant morphological diversification, suggesting that such lineages can constitute a significant component of evolutionary diversity.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.