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92 results for “18S rRNA”
Supplementary material 1 from: Ingala MR, Werner IE, Fitzgerald AM, Naro-Maciel E (2021) 18S rRNA amplicon sequence data (V1–V3) of the Bronx river estuary, New York. Metabarcoding and Metagenomics 5: e69691. https://doi.org/10.3897/mbmg.5.69691
Scripts used for metabarcoding analysis
Supplementary material 2 from: Ingala MR, Werner IE, Fitzgerald AM, Naro-Maciel E (2021) 18S rRNA amplicon sequence data (V1–V3) of the Bronx river estuary, New York. Metabarcoding and Metagenomics 5: e69691. https://doi.org/10.3897/mbmg.5.69691
Figure S1, Tables S1, S2
Data from: Identification of habitat-specific biomes of aquatic fungal communities using a comprehensive nearly full-length 18S rRNA dataset enriched with contextual data
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Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation
GEO Series GSE223172. Arabidopsis thaliana. 71 samples. Type: Expression profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing.
Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation (18S END-Seq)
GEO Series GSE223167. Arabidopsis thaliana. 48 samples. Type: Other.
The integrated stress response finetunes 18S nonfunctional rRNA decay (Ribo-Seq)
GEO Series GSE255780. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
The human 18S rRNA m6A methyltransferase METTL5 is stabilized by TRMT112
GEO Series GSE128699. Homo sapiens. 6 samples. Type: Methylation profiling by high throughput sequencing.
RNA helicase DDX10 is Required for Pluripotency of Stem Cells by Regulating 18S rRNA Processing (CLIP-Seq)
GEO Series GSE232093. Mus musculus. 2 samples. Type: Other.
The integrated stress response finetunes 18S nonfunctional rRNA decay (DMS-MaPseq)
GEO Series GSE255779. Homo sapiens. 8 samples. Type: Other.
Sulfur-dependent translational regulation via methylation multiplicity of 18S rRNA
GEO Series GSE142528. Saccharomyces cerevisiae. 24 samples. Type: Expression profiling by high throughput sequencing; Other.
The 18S rRNA Methyltransferase DIMT-1 Regulates Lifespan in the Germline Later in Life
GEO Series GSE237802. Caenorhabditis elegans. 32 samples. Type: Expression profiling by high throughput sequencing; Other.
Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation (Ribo-Seq)
GEO Series GSE223168. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
RNA helicase DDX10 is Required for Pluripotency of Stem Cells by Regulating 18S rRNA Processing
GEO Series GSE232096. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing; Other.
RNA helicase DDX10 is Required for Pluripotency of Stem Cells by Regulating 18S rRNA Processing (RNA-Seq)
GEO Series GSE232092. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Data from: 18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species
The potential of the 18S rRNA V9 metabarcoding approach for diet assessment was explored using MiSeq paired-end (PE; 2 × 150 bp) technology. To critically evaluate the method′s performance with degraded/digested DNA, the diets of two zooplanktivorous fish species from the Bay of Biscay, European sardine (Sardina pilchardus) and European sprat (Sprattus sprattus), were analysed. The taxonomic resolution and quantitative potential of the 18S V9 metabarcoding was first assessed both in silico and with mock and field plankton samples. Our method was capable of discriminating species within the reference database in a reliable way providing there was at least one variable position in the 18S V9 region. Furthermore, it successfully discriminated diet between both fish species, including habitat and diel differences among sardines, overcoming some of the limitations of traditional visual-based diet analysis methods. The high sensitivity and semi-quantitative nature of the 18S V9 metabarcoding approach was supported by both visual microscopy and qPCR-based results. This molecular approach provides an alternative cost and time effective tool for food-web analysis.
Data from: 18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species
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The start sites of sequences of 18S and 25S rRNA found to be exonuclease resistant as indicated by oligo attachment
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Mettl5 mediated 18S rRNA N6-methyladenosine (m6A) modification controls neural development and the learning and memory function
GEO Series GSE153140. Mus musculus. 25 samples. Type: Expression profiling by high throughput sequencing; Other.
Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation (miRNA-Seq)
GEO Series GSE223171. Arabidopsis thaliana. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation (RNA-Seq)
GEO Series GSE223169. Arabidopsis thaliana. 7 samples. Type: Expression profiling by high throughput sequencing.
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