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122
datasets available to search
ShareScore release 0.9.0
Dataset results
122 results for “3d genome organization”
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms [Hi-C]
GEO Series GSE233384. Drosophila melanogaster. 8 samples. Type: Other.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [T8_ATAC]
GEO Series GSE228944. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [DAP-seq]
GEO Series GSE143722. Oryza sativa. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes [CHiP-seq]
GEO Series GSE273973. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Elementary 3D organization of active and silenced E. coli genome (HiC)
GEO Series GSE272158. Escherichia coli. 2 samples. Type: Other.
Elementary 3D organization of active and silenced E. coli genome (MicroC)
GEO Series GSE272159. Escherichia coli. 31 samples. Type: Other.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle
GEO Series GSE155161. Mus musculus. 52 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
The 3D genomics of lampbrush chromosomes highlights the role of active transcription in chromatin organization [scNOME-seq]
GEO Series GSE288411. Gallus gallus. 11 samples. Type: Other.
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes [RNA-Seq]
GEO Series GSE244951. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice [ATAC-Seq]
GEO Series GSE213089. Oryza sativa Indica Group. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [RNA-Seq]
GEO Series GSE155160. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [BiSulfite-seq]
GEO Series GSE166613. Oryza sativa. 6 samples. Type: Methylation profiling by high throughput sequencing.
Human Core Nucleoporin Selectively Regulates Gene Transcription but is Dispensable for 3D Genome Organization
GEO Series GSE165463. Homo sapiens. 42 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Radiation-Induced DNA Damage and Repair Effects on 3D Genome Organization
GEO Series GSE136899. Homo sapiens. 26 samples. Type: Other.
Regulation of 3D genome organization, transcription and histone H3K9me2 by histone H3K9 methyltransferases [ChIP-Seq]
GEO Series GSE169099. Mus musculus. 40 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_CUT&Tag]
GEO Series GSE228925. Mus musculus. 66 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Nucleotide Excision Repair of Aflatoxin-Induced DNA Damage within the 3D Human Genome Organization
GEO Series GSE243425. Homo sapiens. 2 samples. Type: Other.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [Hi-C]
GEO Series GSE155158. Mus musculus. 16 samples. Type: Other.
The 3D genomics of lampbrush chromosomes highlights the role of active transcription in chromatin organization [scRNA-seq]
GEO Series GSE288413. Gallus gallus. 4 samples. Type: Expression profiling by high throughput sequencing.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [FAIRE-seq]
GEO Series GSE143723. Oryza sativa. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.