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140 results for “COI sequence”
Figure 5 in Phylogenetic relationships of Mesobuthus eupeus (C.L. Koch, 1839) inferred from COI sequences (Scorpiones: Buthidae)
Figure 5. Canonical discriminant analysis of Mesobuthus eupeus and Mesobuthus caucasicus species based on morphological ratios. Mesobuthus eupeus and M. caucasicus are grouped according to species identification shown in Figure 2:, M. eupeus clade A;, M. eupeus clade B;, M. caucasicus;, group centroid.
Figure 4 in Phylogenetic relationships of Mesobuthus eupeus (C.L. Koch, 1839) inferred from COI sequences (Scorpiones: Buthidae)
Figure 4. Principal component analysis of Mesobuthus eupeus based on morphological ratios. The specimens are plotted with respect to first and second components (see text). Mesobuthus eupeus specimens are encircled within clades according to phylogenetic tree shown in Figure 2:
Fig. 1 in Identification of Twelve Species of Coccinellidae (Coleoptera) Predatory on Melanaphis sacchari (Zehntner) (Hemiptera: Aphididae) in Mexico, and Submission of Reference Coi Sequences
Fig. 1. Coccinellid predators of Melanaphis sacchari in cultivated sorghum in Mexico. A) Brachiacantha decora, B) Coccinella septempunctata, C) Coleomegilla maculata lengi, D) Cycloneda sanguinea sanguinea, E) Diomus roseicollis, F) Diomus terminatus, G) Exochomus childreni guexi, H) Harmonia axyridis, I) Hippodamia convergens, J) Olla v-nigrum, K) Scymnus (Pullus) dozieri, and L) Scymnus (Pullus) loewii.
Data from: Rapid and accurate taxonomic classification of insect (Class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier
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Integrative taxonomic analysis to reveal the species status of Bombus flavidus, combining COI and nuclear sequencing, wing morphometrics and secretions used for mate attraction as well as patterns of color polymorphism
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Data from: Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the Northern Red Sea
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Figure 3. D in Neotypification of Drawida hattamimizu Hatai, 1930 (Annelida, Oligochaeta, Megadrili, Moniligastridae) as a model linking mtDNA (COI) sequences to an earthworm type, with a response to the 'Can of Worms' theory of cryptic species
Figure 3. D. hattamimizu detailed internal anatomy showing the disputed paired nephridial funnels ("n.m.") sketched for only three of the nephridia (after Hatai, 1930: fig. 4).
Ludt et al. 2020, Fig. S1: Phenetic tree of sequence similarity constructed using a maximum likelihood approach for mtDNA COI sequences from the EAD survey of the bony-fish species of the Arabian Gulf
<p>Ludt et al. 2020, Fig. S1: Phenetic tree of sequence similarity constructed using a maximum likelihood approach for mtDNA COI sequences from the EAD survey of the bony-fish species of the Arabian Gulf.</p> <p>Ludt, W.B., Jabado, R.W., Al Hameli, S.M., Freeman, L., Teruyama, G., Chakrabarty, P. & Al Dhaheri, S.S. (2020) Establishing a reference collection and DNA barcoding the coastal fishes of the United Arab Emirates. <em>Journal of the Ocean Science Foundation</em>, 35, 54–64.</p>
Fig. 2 in Application Of Dna Barcoding In Taxonomy And Phylogeny: An Individual Case Of Coi Partial Gene Sequencing From Seven Animal Species
Fig. 2. Phylogenetic position of E. roumanicus, Bayesian inference phylogenetic tree. Sequences obtained by us are written in bold.
Supplementary material 2 from: Naro-Maciel E, Ingala MR, Werner IE, Reid BN, Fitzgerald AM (2022) COI amplicon sequence data of environmental DNA collected from the Bronx River Estuary, New York City. Metabarcoding and Metagenomics 6: e80139. https://doi.org/10.3897/mbmg.6.80139
Tables S1,S2, Figures S1–S3
Supplementary material 1 from: Naro-Maciel E, Ingala MR, Werner IE, Reid BN, Fitzgerald AM (2022) COI amplicon sequence data of environmental DNA collected from the Bronx River Estuary, New York City. Metabarcoding and Metagenomics 6: e80139. https://doi.org/10.3897/mbmg.6.80139
Supplementary Data Files 1, 2
COI sequences used in primer design
<p>COI sequences used for designing specific primers for <em>Garra cambodgiensis</em></p>
Figure 3 from: Qiao P, Qin W, Ma H, Zhang T, Su J, Lin G (2018) Two new species of Lithobius on Qinghai-Tibetan plateau identified from morphology and COI sequences (Lithobiomorpha: Lithobiidae). ZooKeys 785: 11-28. https://doi.org/10.3897/zookeys.785.28580
Figure 3 Bayesian tree for the 26 sequences of Lithobiomorpha based on COI sequences. The Bayesian posterior probabilities from Bayesian analyses are presented above the main branches. The scale bar represents substitutions per site.
Figure 2 from: Qiao P, Qin W, Ma H, Zhang T, Su J, Lin G (2018) Two new species of Lithobius on Qinghai-Tibetan plateau identified from morphology and COI sequences (Lithobiomorpha: Lithobiidae). ZooKeys 785: 11-28. https://doi.org/10.3897/zookeys.785.28580
Figure 2 Lithobius (Ezembius) datongensis sp. n., A, C–E holotype, female: A habitus, dorsal view; C forcipular coxosternite, ventral view D female gonopods, dorsal lateral view E female posterior segments and gonopods B, F paratuype, male: B ocelli and Tömösváry's organ (To), lateral view F posterior segments and gonopods, ventral view. Scale bars 1 mm A, C; 300 μm B, D; 500 μm E, F.
Figure 1 from: Qiao P, Qin W, Ma H, Zhang T, Su J, Lin G (2018) Two new species of Lithobius on Qinghai-Tibetan plateau identified from morphology and COI sequences (Lithobiomorpha: Lithobiidae). ZooKeys 785: 11-28. https://doi.org/10.3897/zookeys.785.28580
Figure 1 Lithobius (Ezembius) longibasitarsus sp. n., A, D, E, H–J holotype, female: A dorsal view D ocelli and To, lateral view E forcipular coxosternite, ventral view H posterior segments and gonopods, dorsal view I claw of female gonopod, inboard view J female posterior segments and gonopods, ventral view B, F paratype, female, labelled GH4: B ocelli and To, lateral view F forcipular coxosternite, ventral view C, G, K paratype, male, labelled GH8: C ocelli and To, lateral view G forcipular coxosternite, ventral view K posterior segments and gonopods, ventral view. Scale bars 1 mm A, E, F, G; 300 μm B, C, D, H, I; 500 μm J.
Fig. 3 in Description of Sarcocystis scandentiborneensis sp. nov. from treeshrews (Tupaia minor, T. tana) in northern Borneo with annotations on the utility of COI and 18S rDNA sequences for species delineation
Fig. 3. Phylogenetic tree of nuclear 18S rDNA sequences of the Sarcocystidae, including the new Sarcocystis sp. from treeshrews (black symbols). Taxa of the Eimeriidae served as outgroup. Bayesian Inference was used for phylogeny reconstruction, whereby the general time-reversible substitution model (GTR + G + I) combined with an assumed among-site variation ('covariotide' model) was applied. Values for posterior probability are indicated behind nodes. Note that the new species is part of a monophyletic subclade previously tagged S1 (Wassermann et al., 2017), which includes taxa known to prefer snakes as definitive and rodents as intermediate hosts. Sequences E357-13 and E364-13 are available at GenBank under MN733816 and MN733817, respectively.
TABLE 3. Distance matrix from nucleotide sequences for COI, 16 S in A new species of stauromedusa, Calvadosia festivala (Cnidaria: Staurozoa: Kishinouyeidae) from India
<p><b>TABLE 3.</b> Distance matrix from nucleotide sequences for COI, 16S, and 18S alignments from <i>Calvadosia</i> species closely related to <i>Calvadosia festivala</i> n. sp. “−”: represents absence of data for comparison (COI not available for <i>C. tasmaniensis</i> and <i>C. corbini</i>).</p><table><tbody><tr><th>Species</th><th>1</th><th>2</th><th>3</th><th>4</th><th>5</th></tr></tbody><tbody><tr><th>1. <i>C. tasmaniensis</i></th><td>COI: 0.0000 16S: 0.0000 18S: 0.0000</td><td></td><td></td><td></td><td></td></tr><tr><th>2. <i>C. lewisi</i></th><td>COI: − 16S: 0.0945 18S: 0.0017</td><td>COI: 0.0000 16S: 0.0000 18S: 0.0000</td><td></td><td></td><td></td></tr><tr><th>3. <i>C. corbini</i></th><td>COI: − 16S: 0.0985 18S: 0.0017</td><td>COI: − 16S: 0.1266 18S: 0.0038</td><td>COI: 0.0000 16S: 0.0000 18S: 0.0000</td><td></td><td></td></tr><tr><th>4. <i>C. festivala</i> n. sp.</th><td>COI: − 16S: 0.1400 18S: 0.0000</td><td>COI: 0.2215 16S: 0.1629 18S: 0.0014</td><td>COI: − 16S: 0.1430 18S: 0.0014</td><td>COI: 0.0000 16S: 0.0000 18S: 0.0000</td><td></td></tr><tr><th>5. <i>Calvadosia</i> sp. Moorea</th><td>COI: − 16S: 0.1917 18S: 0.0085</td><td>COI: 0.2506 16S: 0.2197 18S: 0.0070</td><td>COI: − 16S: 0.21009 18S: 0.0045</td><td>COI: 0.2158 16S: 0.2193 18S: 0.0083</td><td>COI: 0.0000 16S: 0.0000 18S: 0.0000</td></tr></tbody></table>
Supplementary material 2 from: Leblanc L, Tsatsia F, Doorenweerd C (2021) Novel lures and COI sequences reveal cryptic new species of Bactrocera fruit flies in the Solomon Islands (Diptera, Tephritidae, Dacini). ZooKeys 1057: 49-103. https://doi.org/10.3897/zookeys.1057.68375
Table S1. Pairwise molecular distance
Figure 4 from: Leblanc L, Tsatsia F, Doorenweerd C (2021) Novel lures and COI sequences reveal cryptic new species of Bactrocera fruit flies in the Solomon Islands (Diptera, Tephritidae, Dacini). ZooKeys 1057: 49-103. https://doi.org/10.3897/zookeys.1057.68375
Figure 4 Bactrocera pseudodistincta (Drew) A head B head and scutum C abdomen D wing E lateral view.
Figure 6 from: Leblanc L, Tsatsia F, Doorenweerd C (2021) Novel lures and COI sequences reveal cryptic new species of Bactrocera fruit flies in the Solomon Islands (Diptera, Tephritidae, Dacini). ZooKeys 1057: 49-103. https://doi.org/10.3897/zookeys.1057.68375
Figure 6 Bactrocera geminosimulata sp. nov. A head B head and scutum C abdomen D lateral view and wing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.