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779
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ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Bisulfite-seq: Analysis of CpG methylation at two CTCF binding sites flanking the CTG repeats of DMPK.
GEO Series GSE148177. Homo sapiens. 6 samples. Type: Methylation profiling by high throughput sequencing.
CTCF-mediated enhancer-promoter interaction is a critical regulator of cell-to-cell variation of gene expression
GEO Series GSE66343. Mus musculus. 21 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
ChIP-seq: Analysis of CTCF occupancy in unaffected and DM1 patient lymphoblastoid cell lines.
GEO Series GSE148179. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Nuclear receptor activation leads to functional changes in CTCF-defined chromatin structure [HiChIP]
GEO Series GSE188380. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chd4 regulates intra-chromatin looping by concealing CTCF sites from B2 SINEs in mESCs
GEO Series GSE172392. Mus musculus. 165 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
ChIP-seq of CTCF from mouse hippocampus
GEO Series GSE84174. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
GEO Series GSE156099. Danio rerio. 78 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF is required to form regulatory and physical boundaries at limited sites in the Drosophila nervous system [RNA-seq]
GEO Series GSE146751. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
ChIP-on-chip from murine myeloid cell line M1 and virus-induced myeloid leukemia cell lines for H3K4me3, H3K9/14ac, H3K4me1, H3K27me3, H3K9me3 and CTCF
GEO Series GSE34770. Mus musculus. 28 samples. Type: Genome binding/occupancy profiling by array.
ChIP-seq for CTCF and Rad21 in Rag1−/− pro-B cells
GEO Series GSE26257. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
STAG2 promotes CTCF-anchored loop extrusion and cis-promoter and -enhancer interactions
GEO Series GSE133228. Homo sapiens. 336 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by array.
CTCF acetylation at lysine 20 is required for early cardiac mesoderm differentiation from embryonic stem cells [RNA-Seq]
GEO Series GSE181704. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Single Cell RNA-Seq Reveals Changing Landscape of Cell-to-Cell Variation Induced by CTCF Knockdown
GEO Series GSE135769. Mus musculus. 96 samples. Type: Expression profiling by high throughput sequencing.
Myeloid leukemia dependency MYNRL15 exemplifies class of CTCF-bound lncRNA loci [RNA-Seq]
GEO Series GSE172238. Homo sapiens. 39 samples. Type: Expression profiling by high throughput sequencing.
Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [4C]
GEO Series GSE211024. Mus musculus. 16 samples. Type: Other.
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [Hi-C and PLAC-seq]
GEO Series GSE153402. Mus musculus. 14 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
Phased gene expression and chromatin accessibility during progressive EMT and MET linked to dynamic CTCF engagement (ATAC-Seq)
GEO Series GSE145849. Homo sapiens. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
De novo mutations in the genome organizer CTCF cause Intellectual Disability
GEO Series GSE46833. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Binding domain mutations provide insight into CTCF's relationship with chromatin and its contribution to gene regulation (Hi-C)
GEO Series GSE270627. Mus musculus. 22 samples. Type: Other.
Histone H3 Lysine 4 mono-, di- and trimethyl and CTCF in CD4+CD25+CD45RA+ regulatory and conventional CD4+CD25- T-cells
GEO Series GSE14234. Homo sapiens. 22 samples. Type: Genome binding/occupancy profiling by genome tiling array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.