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82 results for “Community: succession”
Data from: Re-growing a tropical dry forest: functional plant trait composition and community assembly during succession
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Functional traits of both specific alien species and receptive community but not community diversity determined the invasion success under biotic and abiotic conditions
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Identifying mechanisms for successful ecological restoration with salvaged topsoil in coastal sage scrub communities
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Dataset_Dryocosmus_Torymus_Article recommended by PCI Zoology: The open bar is closed: restructuration of a native parasitoid community following successful control of an invasive pest.
<p>This Dataset has been used for the analyses within the paper recommended by PCI Zoology and entitled:</p> <p>"The open bar is closed: restructuration of a native parasitoid community following successful control of an invasive pest."<br> </p> <p> </p>
Data from: Elevated success of multispecies bacterial invasions impacts community composition during ecological succession
Successful microbial invasions are determined by a species' ability to occupy a niche in the new habitat whilst resisting competitive exclusion by the resident community. Despite the recognised importance of biotic factors in determining the invasiveness of microbial communities, the success and impact of multiple concurrent invaders on the resident community has not been examined. Simultaneous invasions might have synergistic effects, for example if resident species need to exhibit divergent phenotypes to compete with the invasive populations. We used three phylogenetically diverse bacterial species to invade two compositionally distinct communities in a controlled, naturalised in vitro system. By initiating the invader introductions at different stages of succession, we could disentangle the relative importance of resident community structure, invader diversity and time pre-invasion. Our results indicate that multiple invaders increase overall invasion success, but do not alter the successional trajectory of the whole community.
Input data and Supplementary Results for "Community-level signatures of ecological succession in natural bacterial communities"
<p> </p> <p><strong>README<br> ======</strong></p> <p><br> This file describes the content of the different files included in this repository to<br> reproduce results from [1] and some of its supplementary results.</p> <p> </p> <p><strong>## Input files ##</strong></p> <p><strong>* 20151016_Functions_remainder.csv</strong></p> <p> Functions measured in [2]. The relevant quantities used in [1] are labelled with "7", and include:<br> <br> * Community: Id of the sample<br> * Replicate<br> * Plate<br> * mgCO2.7: CO2 measured along 7 days of experiment<br> * CPM7: Cell counts at the end of the experiment<br> * pgRPC.7: CO2 per cell<br> * ATP7: ATP measured (nM)<br> * mG7: beta glucosidase (mM)<br> * mN7: beta chitinase (mM)<br> * mX7: xylosidase (mM)<br> * mP7: phosphatase (mM)<br> <br> <strong>* samples_metadata_time0.tsv</strong></p> <p> * Samples: Id of the sample <br> * Part.dates: Date of sampling<br> * Part.GPS.PAM: Optimal sampling sites <br> * Part.SparCC.PAM.t0: Optimal partition using SparCC<br> * Part.SJD.PAM.t0: Optimal partition using Jensen-Shannon Divergence<br> * Part.Dir.t0: Optimal partition using Dirichlet mixtures<br> * Part.month: Month in which the community was sampled<br> <strong>* Dist_GPS-Haversine.dat</strong></p> <p> Haversine (spatial) distances between samples</p> <p><strong>* corMat-SparCC_20151016_OTU_remainder.clean.samples.txt</strong></p> <p> Matrix of correlations between samples computed with SparCC<br> <br> <strong>* distMat_ShannonJensen_Samples_Time0.clean.dat</strong></p> <p> Distance matrix computed with Jensen-Shannon divergence.</p> <p> </p> <p><br> <strong>## Supplementary results ##</strong></p> <p><strong>* SEMmodels.zip</strong></p> <p> Results for the Structural Equation Models analysed. The structure of the folders follows the one<br> available at the repository of the [project ](https://github.com/apascualgarcia/TreeHoles_descriptive).<br> <br> <strong>* TaxaSummaries.zip</strong></p> <p> The file contains one folder for each community-class, with matrices in different formats (biom and txt) computing the relative abundances of the OTUs at different taxonomic levels (labelled L2 being the proxy for Phylum to L6, the proxy of species). These matrices can be visualized interactively opening with a web browser the files area_charts.html.</p> <p><strong>#### References ####</strong></p> <blockquote> <p> [1] Pascual-García, A., & Bell, T. (2019). Community-level signatures of ecological succession in natural bacterial communities. Nature Communications (In press)</p> </blockquote> <blockquote> <p> [2] Rivett, Damian W., and Thomas Bell. Abundance determines the functional role of bacterial phylotypes in complex communities." Nature microbiology 3.7 (2018): 767.</p> </blockquote> <p> </p>
Figure 4 from: Antonović I, Brigić A, Sedlar Z, Bedek J, Šoštarić R (2012) Terrestrial isopod community as indicator of succession in a peat bog. ZooKeys 176: 171-188. https://doi.org/10.3897/zookeys.176.2379
Figure 4 - nMDS ordination of studied sites and Bray-Curtis similarities with superimposed results of cluster analysis. Site B – bog; Site E – edge; Site F – forest.
Figure 2 from: Antonović I, Brigić A, Sedlar Z, Bedek J, Šoštarić R (2012) Terrestrial isopod community as indicator of succession in a peat bog. ZooKeys 176: 171-188. https://doi.org/10.3897/zookeys.176.2379
Figure 2 - Soil temperature and soil humidity at the Dubravica bog and adjacent forest during 2008 and 2009. Temperature values are presented with different symbols and humidity values with bars. Site B – bog; Site E – edge; Site F – forest.
Figure 1 from: Antonović I, Brigić A, Sedlar Z, Bedek J, Šoštarić R (2012) Terrestrial isopod community as indicator of succession in a peat bog. ZooKeys 176: 171-188. https://doi.org/10.3897/zookeys.176.2379
Figure 1 - Sampling sites in the Dubravica bog and surrounding forest. Site B - bog Site E - edge Site F - forest.
Figure 3 from: Antonović I, Brigić A, Sedlar Z, Bedek J, Šoštarić R (2012) Terrestrial isopod community as indicator of succession in a peat bog. ZooKeys 176: 171-188. https://doi.org/10.3897/zookeys.176.2379
Figure 3 - Protracheoniscus politus seasonal activity at three studied sites with different vegetation. Site B – bog; Site E – edge; Site F – forest; Y-axis shows total number of monthly caught individuals.
Supplementary material 1 from: Anibaba QA, Dyderski MK, Woźniak G, Jagodziński AM (2023) Native plant community characteristics explain alien species success in post-industrial vegetation. NeoBiota 85: 1-22. https://doi.org/10.3897/neobiota.85.97269
Frequency and cover of alien species occurring on post-coal mine spoil heaps
Data from: Two dimensions define the variation of fine root traits across plant communities under the joint influence of ecological succession and annual mowing
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Data from: Community assembly and functional diversity along succession post-management
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Data from: Species colonisation, not competitive exclusion, drives community overdispersion over long-term succession
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Data from: Elevated success of multispecies bacterial invasions impacts community composition during ecological succession
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Data from: Host associated bacterial community succession during amphibian development
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Data from: Diverse pollinator communities enhance plant reproductive success
Understanding the functional consequences of biodiversity loss is a major goal of ecology. Animal-mediated pollination is an essential ecosystem function and service provided to mankind. However, little is known how pollinator diversity could affect pollination services. Using a substitutive design, we experimentally manipulated functional group (FG) and species richness of pollinator communities to investigate their consequences on the reproductive success of an obligate out-crossing model plant species, Raphanus sativus. Both fruit and seed set increased with pollinator FG richness. Furthermore, seed set increased with species richness in pollinator communities composed of a single FG. However, in multiple-FG communities, highest species richness resulted in slightly reduced pollination services compared with intermediate species richness. Our analysis indicates that the presence of social bees, which showed roughly four times higher visitation rates than solitary bees or hoverflies, was an important factor contributing to the positive pollinator diversity–pollination service relationship, in particular, for fruit set. Visitation rate at different daytimes, and less so among flower heights, varied among social bees, solitary bees and hoverflies, indicating a niche complementarity among these pollinator groups. Our study demonstrates enhanced pollination services of diverse pollinator communities at the plant population level and suggests that both the niche complementarity and the presence of specific taxa in a pollinator community drive this positive relationship.
Patient Experience and Technical Success of Community Sleep Studies
ClinicalTrials.gov study NCT05432102. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Data from: Diverse pollinator communities enhance plant reproductive success
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A Patient-centered Approach to Successful Community Transition After Catastrophic Injury
ClinicalTrials.gov study NCT02746978. IPD Sharing: NO. Countries: 0. Publications: 0.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.