Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
158
datasets available to search
ShareScore release 0.9.0
Dataset results
158 results for “Crypt”
Comparison of Sox9-EGFP cell type transcriptomes during irradiation-induced crypt regeneration
GEO Series GSE32227. Mus musculus. 48 samples. Type: Expression profiling by array.
RNA Polymerase II Dynamics along the Intestinal Crypt-Villus Axis
GEO Series GSE244918. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNAseq of mRNA from murine small intestinal crypts
GEO Series GSE182934. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
To determine the potential molecular mechanisms by which STAT5 signaling controls colonic crypt homeostasis, we isolated total RNA from ileal intact crypts of STAT5+/+, STAT5DIEC-/- and STAT5DIEC+++ m
GEO Series GSE112607. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Single cell analysis of Granuloma crypt epithelium
GEO Series GSE108233. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profiling of Eed knockout and Ezh2 knockout small intestinal crypts [RNA-seq]
GEO Series GSE81576. Mus musculus. 13 samples. Type: Expression profiling by high throughput sequencing.
Intrachromosomal interactions across the intestinal crypt-villus axis and the imapct on chromatin looping upon HNF4 loss
GEO Series GSE148691. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA-seq in Prdm16 KO duodenal crypts
GEO Series GSE121009. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Chromatin Remodelling in Damaged Intestinal Crypts Orchestrates Redundant TGFβ and Hippo Signalling to Drive Regeneration
GEO Series GSE230766. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Dll1 marks early secretory progenitors in gut crypts that can revert to stem cells upon tissue damage
GEO Series GSE39915. Mus musculus. 7 samples. Type: Expression profiling by array.
IL-22+ T cells protect intestinal crypts from bacterial invasion and epithelial damage.
GEO Series GSE114338. Mus musculus. 33 samples. Type: Expression profiling by high throughput sequencing.
Ascl2 acts as an R-spondin/Wnt responsive switch to control stemness in intestinal crypts [array]
GEO Series GSE57053. Mus musculus. 8 samples. Type: Expression profiling by array.
Evolution of Barrett’s Esophagus through space and time at single-crypt and whole-biopsy levels [Batch 3 of 7]
GEO Series GSE99268. Homo sapiens. 96 samples. Type: Genome variation profiling by SNP array.
Transcriptomic and Proteomic Signatures of Stemness and Differentiation in the Colon Crypt
GEO Series GSE143915. Mus musculus. 22 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA sequencing of cells isolated from the intestinal crypts of mice bearing epithelial cell-specific Ptger4 ablation (Drop-seq)
GEO Series GSE142418. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Graded BMP signaling within intestinal crypt architecture directs self-organization of the Wnt-secreting stem cell niche
GEO Series GSE211275. Mus musculus. 33 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Intestinal tuft cell subtypes represent successive stages of maturation driven by crypt-villus signaling gradients
GEO Series GSE276950. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Ascl2 acts as an R-spondin/Wnt responsive switch to control stemness in intestinal crypts
GEO Series GSE84457. Homo sapiens; Mus musculus. 14 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
RNAseq comparison of Whole crypt mRNA levels between Control, conditional Notchless KO, Apc KO and Notchless-Apc KO mice 24h or 48h after induction
GEO Series GSE144233. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
PRDM16 ChIP-Seq in Prdm16 WT and KO duodenal crypts
GEO Series GSE131487. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.