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540
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Dataset results
540 results for “Data Normalization”
Raw data for manuscript Semantic context can mask intelligibility declines at above-conversational speech levels in normal-hearing listeners
<p>Raw data for the manuscript in doc file. <br> Copied from the Matlab .m file. used for the analysis.</p> <p>To be updated.</p> <p>For details, contact me at mfer@health.sdu.dk</p>
TARDIS configuration and emulator weights and training data for "1991T-Like Type Ia Supernovae as an Extension of the Normal Population"
<p>This dataset contains two archives of data related to the paper "1991T-Like Type Ia Supernovae as an Extension of the Normal Population"<br> <br> The first dataset, <a href="https://zenodo.org/api/files/de696fe0-3280-44f2-8ef4-975b92fad260/TARDIS_Emulator_Config.tar.gz">TARDIS_Emulator_Config.tar.gz </a>, contains the atomic data used to run TARDIS and a template configuration file from which samples are generated including the flags for the physics implementation used.</p> <p>The second dataset, InferenceScripts.tar.gz, contains the trained probabilistic neural network, the training/validation data (Under NNData), and scripts used to train the model and load and evaluate the model. Scripts that perform inference on spectra, as well as a folder of observed spectra (Under CorrectedSpectra), are included as well. A conda environment yaml file is included to rebuild the Python environment required to run all of the scripts. For questions please email John O'Brien.</p>
Apache Point Observatory Lunar Laser-ranging Operation (APOLLO) normal point data: 2006 through 2020
<p>Normal point data from the Apache Point Observatory Lunar Laser-ranging Operation (APOLLO) covering the 15-year span from April 2006 through the end of 2020. APOLLO measures the earth-moon separation by recording the round-trip travel time of photons from the Apache Point Observatory to five retro-reflector arrays on the moon. The APOLLO data set, combined with the 50-year archive of measurements from other lunar laser ranging (LLR) stations, can be used to probe fundamental physics such as gravity and Lorentz symmetry, as well as properties of the moon itself. These normal points have a median nightly accuracy of 1.7mm, which is an order of magnitude better than other LLR stations. Data is provided in both the "JPL" format (.np) and the Consolidated Laser Ranging Data Format (.crd)</p>
TCGA RNA-Seq normalized rsem data, TCGA clinical data and mutational signature profiles
<p>Normalized rsem RNA-Seq data for each of the 33 TCGA tumor types named as "<em>tumortype</em>rnaSeq.tar", a file containing TCGA clinical data ("cliDat_tcga_18.tar") and a text file with single base substitution mutational signatures for each sample from COSMIC (https://cancer.sanger.ac.uk/cosmic, “signatureProfileSample.txt.zip”).</p>
A systematic evaluation of normalization methods and probe replicability using infinium EPIC methylation data
<p><strong>Background </strong></p> <p>The Infinium EPIC array measures the methylation status of > 850,000 CpG sites. The EPIC BeadChip uses a two-array design: Infinium Type I and Type II probes. These probe types exhibit different technical characteristics which may confound analyses. Numerous normalization and pre-processing methods have been developed to reduce probe type bias as well as other issues such as background and dye bias. <strong> </strong></p> <p><strong>Methods</strong></p> <p>This study evaluates the performance of various normalization methods using 16 replicated samples and three metrics: absolute beta-value difference, overlap of non-replicated CpGs between replicate pairs, and effect on beta-value distributions. Additionally, we carried out Pearson's correlation and intraclass correlation coefficient (ICC) analyses using both raw and SeSAMe 2 normalized data. <strong> </strong></p> <p><strong>Results</strong></p> <p>The method we define as SeSAMe 2, which consists of the application of the regular SeSAMe pipeline with an additional round of QC, pOOBAH masking, was found to be the best-performing normalization method, while quantile-based methods were found to be the worst performing methods. Whole-array Pearson's correlations were found to be high. However, in agreement with previous studies, a substantial proportion of the probes on the EPIC array showed poor reproducibility (ICC < 0.50). The majority of poor-performing probes have beta values close to either 0 or 1, and relatively low standard deviations. These results suggest that probe reliability is largely the result of limited biological variation rather than technical measurement variation. Importantly, normalizing the data with SeSAMe 2 dramatically improved ICC estimates, with the proportion of probes with ICC values > 0.50 increasing from 45.18% (raw data) to 61.35% (SeSAMe 2).</p>
Supplemental data to "Acute and persistent effects of oral glutamine supplementation on growth, cellular proliferation, and tight junction protein transcript abundance in jejunal tissue of low and normal birthweight pre-weaning piglets"
<p>Supplementary data to "Acute and persistent effects of oral glutamine supplementation on growth, cellular proliferation, and tight junction protein transcript abundance in jejunal tissue of low and normal birthweight pre-weaning piglets"</p>
Single-cell and spatially resolved transcriptomic data of mouse regenerative livers under normal and fibrotic conditions
<p>A single-cell spatial-temporal transcriptomic atlas of liver regeneration under normal and fibrotic condition, including a total of 30 mouse liver samples obtained from 15 normal and 15 fibrotic mice at timepoints Day 0, 1, 2, 3, and 7 after a partial hepatectomy (PHx) procedure with three replicates for each time point, followed by the scRNA-seq and SRT sequencing for each sample using the Stereo-seq platform. </p>
Data from: Hay provision affects 24-h performance of normal and abnormal oral behaviors in dairy calves
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Data from: Rethinking ‘normal’: the role of stochasticity in the phenology of a synchronously breeding seabird
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Data from: Characterization of gut microbiota composition in hemodialysis patients with normal weight obesity
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Data from: Arithmetic normalization models for the effects of lipid on carbon stable isotope values in silver carp (Hypophthalmichthys molitrix) tissue
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Data from: Evidence for normal novel object recognition abilities in developmental prosopagnosia
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Data from: The classical and alternative circulating renin-angiotensin system in normal dogs and dogs with stage B1 and B2 myxomatous mitral valve disease
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Data from: <em>Htr1b</em> is necessary for normal retinal function in mice
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A systematic evaluation of normalization methods and probe replicability using infinium EPIC methylation data
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Data from: Improving structured population models with more realistic representations of non-normal growth
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Data from: The Chord-Normalized Expected Species Shared (CNESS)-distance represents a superior measure of species turnover patterns
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Data from: Comparative venom analysis between melanistic and normally-colored phenotypes of the common adder (Vipera berus)
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Data from: Single-cell transcriptomic analysis of tumor-derived fibroblasts and normal tissue-resident fibroblasts reveals fibroblast heterogeneity in breast cancer
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Sequencing data and normalized counts for tripartite RNAseq of Drosophila, Wolbachia, and SINV virus
<p><span><i>Wolbachia</i> is a maternally transmitted bacterium that manipulates arthropod and nematode biology in myriad ways. The <i>Wolbachia</i> strain colonizing <i>Drosophila melanogaster</i> creates sperm-egg incompatibilities and protects its host against RNA viruses, making it a promising tool for vector control. Despite successful trials using <i>Wolbachia</i>-transfected mosquitoes for Dengue control, knowledge of how <i>Wolbachia</i> and viruses jointly affect insect biology remains limited. Using the <i>Drosophila melanogaster </i>model, transcriptomics and gene expression network analyses revealed pathways with altered expression and splicing due to <i>Wolbachia</i> colonization and virus infection. Included are metabolic pathways previously unknown to be important for <i>Wolbachia</i>-host interactions. Additionally, <i>Wolbachia</i>-colonized flies exhibit a dampened transcriptomic response to virus infection, consistent with early blocking of virus replication. Finally, using <i>Drosophila</i> genetics, we show <i>Wolbachia</i> and expression of nucleotide metabolism genes have interactive effects on virus replication. Understanding the mechanisms of pathogen blocking will contribute to the effective development of <i>Wolbachia</i>-mediated vector control programs.</span></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.