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ShareScore release 0.9.0
Dataset results
74 results for “Genome scans”
Genomic targets of the KRAB and scan domain-containing zinc finger protein 263 (ZNF263).
GEO Series GSE19235. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Data from: A population genomic scan in Chorthippus grasshoppers unveils previously unknown phenotypic divergence
Understanding the genetics of speciation and the processes that drive it is a central goal of evolutionary biology. Grasshoppers of the Chorthippus species group differ strongly in calling song (and corresponding female preferences) but are exceedingly similar in other characteristics such as morphology. Here, we performed a population genomic scan on three Chorthippus species (Chorthippus biguttulus, C. mollis and C. brunneus) to gain insight into the genes and processes involved in divergence and speciation in this group. Using an RNA-seq approach, we examined functional variation between the species by calling SNPs for each of the three species pairs and using FST-based approaches to identify outliers. We found approximately 1% of SNPs in each comparison to be outliers. Between 37% and 40% of these outliers were nonsynonymous SNPs (as opposed to a global level of 17%) indicating that we recovered loci under selection. Among the outliers were several genes that may be involved in song production and hearing as well as genes involved in other traits such as food preferences and metabolism. Differences in food preferences between species were confirmed with a behavioural experiment. This indicates that multiple phenotypic differences implicating multiple evolutionary processes (sexual selection and natural selection) are present between the species.
Development of Escitalopram Genomic Device by Using Candidate Gene Approach and Genome-Wide Scanning
ClinicalTrials.gov study NCT00935246. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Genome Scan for Obesity in a Multi-Ethnic Sample
ClinicalTrials.gov study NCT00037271. IPD Sharing: Not stated. Countries: 0. Publications: 7.
Genomic targets of the KRAB and scan domain-containing zinc finger protein 263 (ZNF263).
GEO Series GSE19146. Homo sapiens. 6 samples. Type: Expression profiling by array.
Data from: A population genomic scan in Chorthippus grasshoppers unveils previously unknown phenotypic divergence
Open the record for dataset details and reuse information.
caArray_gray-00298: Genomic and transcriptional aberrations linked to breast cancer pathophysiologies - Genome Copy Number (Scanning and OncoBAC)
GEO Series GSE69035. Homo sapiens. 290 samples. Type: Genome variation profiling by genome tiling array.
The Sweden Canceromics Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine [microar
GEO Series GSE60785. Homo sapiens. 55 samples. Type: Expression profiling by array.
Whole genome scanning of lung tumors and mucosal biopsies on Affymetrix NspI-250K platform
GEO Series GSE29365. Homo sapiens. 25 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
The Sweden Canceromics Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine
GEO Series GSE60789. Homo sapiens. 110 samples. Type: Expression profiling by high throughput sequencing; Expression profiling by array.
Genome-wide Scan for Methylation Profiles in Breast Cancer
GEO Series GSE66695. Homo sapiens. 120 samples. Type: Methylation profiling by genome tiling array.
Genome-wide Scan for Methylation Profiles in Keloids
GEO Series GSE56420. Homo sapiens. 12 samples. Type: Methylation profiling by genome tiling array.
Genome-wide Scan for Methylation Profiles in head and Neck Cancer
GEO Series GSE67114. Homo sapiens. 8 samples. Type: Methylation profiling by genome tiling array.
Scanning iron response regulator binding sites using RNA-seq and Dap-seq in the Brucella genome
GEO Series GSE215027. Brucella melitensis M5-90. 6 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.