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Supplementary material 1 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Map of sampling locations:
Figure 3 from: Sutton BD, Steck GJ, Norrbom AL, Rodriguez EJ, Srivastava P, Alvarado NN, Colque F, Landa EY, Sánchez JJL, Quisberth E, Peñaranda EA, Clavijo PAR, Alvarez-Baca JK, Zapata TG, Ponce P (2015) Nuclear ribosomal internal transcribed spacer 1 (ITS1) variation in the Anastrepha fraterculus cryptic species complex (Diptera, Tephritidae) of the Andean region. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 175-191. https://doi.org/10.3897/zookeys.540.6147
Figure 3 - Overall similarity inferred by UPGMA (unweighted pair group method with arithmetic mean) cluster analysis (Sneath and Sokal (1973) of Andean Anastrepha fraterculus ITS1 sequence types (489nt). Distances were computed by the maximum composite likelihood method (Tamura et al. (2004) in number of base substitutions per site with gaps eliminated.
Figure 2 from: Sutton BD, Steck GJ, Norrbom AL, Rodriguez EJ, Srivastava P, Alvarado NN, Colque F, Landa EY, Sánchez JJL, Quisberth E, Peñaranda EA, Clavijo PAR, Alvarez-Baca JK, Zapata TG, Ponce P (2015) Nuclear ribosomal internal transcribed spacer 1 (ITS1) variation in the Anastrepha fraterculus cryptic species complex (Diptera, Tephritidae) of the Andean region. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 175-191. https://doi.org/10.3897/zookeys.540.6147
Figure 2 - ITS1 polymorphic region sequences for Andean Anastrepha fraterculus; hypothetical alignment.
Figure 1 from: Juárez ML, Devescovi F, Břízová R, Bachmann G, Segura DF, Kalinová B, Fernández P, Ruiz MJ, Yang J, Teal PEA, Cáceres C, Vreysen MJB, Hendrichs J, Vera MT (2015) Evaluating mating compatibility within fruit fly cryptic species complexes and the potential role of sex pheromones in pre-mating isolation. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 125-155. https://doi.org/10.3897/zookeys.540.6133
Figure 1 - Walk-in field cage set up to evaluate female response to male pheromone: a artificial lek hanging from the tree b Anastrepha fraterculus female over an artificial lek.
Figure 2 from: Hee AKW, Ooi YS, Wee SL, Tan KH (2015) Comparative sensitivity to methyl eugenol of four putative Bactrocera dorsalis complex sibling species – further evidence that they belong to one and the same species B. dorsalis. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 313-321. https://doi.org/10.3897/zookeys.540.6099
Figure 2 - Probit lines of Bactrocera dorsalis and the former taxa Bactrocera papayae, Bactrocera philippinensis and Bactrocera invadens attraction to methyl eugenol.
Figure 1 from: Hee AKW, Ooi YS, Wee SL, Tan KH (2015) Comparative sensitivity to methyl eugenol of four putative Bactrocera dorsalis complex sibling species – further evidence that they belong to one and the same species B. dorsalis. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 313-321. https://doi.org/10.3897/zookeys.540.6099
Figure 1 - Dose-sensitivity response curves of Bactrocera dorsalis and the former taxa Bactrocera papayae, Bactrocera invadens and Bactrocera philippinensis to methyl eugenol at different doses.
Figure 6 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 6 - Cytogenetic summary of sexual chromosome pair. Ideogram of sex chromosomes of Anastrepha fraterculus from Argentina (most frequent karyotype). Relative location of C-Bands, DAPI/CMA bands, 18S and anti-H3S28ph hybridization signals.
Figure 4 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 4 - Immunodetection analysis with H3S28ph antibody. Mitotic chromosome preparations of male (A, B, C) and female (D, E, F) individuals from Anastrepha fraterculus A, D DAPI stain B, E anti-H3S28ph hybridization signal C, F Merged images. Arrow heads indicate sex chromosome position.
Figure 1 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 1 - C-Band Ideogram. Sex chromosomes configurations of Anastrepha fraterculus found in Argentina (redrawn from Basso 2003). * Position of centromeres in each chromosome.
Figure 3 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 3 - 18S rDNA FISH analysis. Mitotic chromosome preparations from third instar larvae of Anastrepha fraterculus male. A DAPI stain B rDNA hybridization signal (autologous probe) C Merged images.
Figure 2 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 2 - The most frequent karyotype of Anastrepha fraterculus found in Argentina. Mitotic chromosome preparations from third instar larvae of Anastrepha fraterculus male. A C-Bands B DAPI stain C CMA stain D Merged DAPI/CMA images.
Figure 5 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 5 - 18S rDNA FISH analysis in polytene and mitotic tissues. Polytene and mitotic chromosome preparations obtained from third instar larvae of male (A) and female (B) of Anastrepha fraterculus. In each case: 1 Polytene chromosomes DAPI stain 2 Polytene chromosomes 18S rDNA hybridization signa (FISH) 3 Polytene chromosomes merged image (DAPI/FISH) 4 Mitotic chromosomes DAPI stain 5 Mitotic chromosomes 18S rDNA hybridization signal (FISH) 6 Mitotic chromosomes merged image (DAPI/FISH).
Figure 5 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Figure 5 - Simplified network of Bactrocera carambolae and Bactrocera dorsalis groups, and the sequential disconnection of the network. The network was constructed using eight SSRs. Scanning was done for decreasing thresholds A is the fully connected network B is the percolation threshold (Dp = 0.20, with all links corresponding to distances superior to Dp excluded). DP, JK, and NT are connecting between Bactrocera carambolae and Bactrocera dorsalis groups. Red dashed lines with number are corresponded to the threshold values, revealing serial disconnection of the network C is the lowest threshold (thr = 0.15).
Figure 4 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Figure 4 - Simplified network of seven Bactrocera carambolae populations, and the sequential forms of cluster. The network was constructed using eight SSRs. Scanning was done for decreasing thresholds A is the fully connected network B is the percolation threshold (Dp = 0.52, with all links corresponding to distances superior to Dp excluded). JK plays an important role connecting between native and introduced populations C–D are the lower thresholds chosen (thr = 0.40 and 0.15, respectively) to reveal sub-structured network.
Figure 3 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Figure 3 - The individual admixture plot for K = 3. Each bar reveals a single individual. Each color of bars represents each genetic cluster. Samples of Bactrocera carambolae belong to clusters 2 and 3 (green and blue, respectively) while samples of Bactrocera dorsalis belong to cluster 1 (red). Potential hybrids have a proportion of genetic cluster (Q) between 0.100 to 0.900 (0.100 ≤ Q ≤ 0.900) as identified with asterisk (*).
Figure 1 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Figure 1 - Sampling collections of Bactrocera carambolae and Bactrocera dorsalis in this study. Seven populations of Bactrocera carambolae (blue dots) were collected from Southeast Asia and Suriname. Three populations of Bactrocera dorsalis (red dots) were sampled from East and Southeast Asia. Two other unidentified populations (purple dots) were included. Information for each population is described in Table 1.
Figure 6 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Figure 6 - Simplified network of the SY5 strain and wild populations, and the sequential disconnection of the network. The network was constructed using seven SSRs. Scanning was done for decreasing thresholds A is the fully connected network B is the percolation threshold (Dp = 0.23, with all links corresponding to distances superior to Dp excluded). DP, JK, and NT are connecting between Bactrocera carambolae and Bactrocera dorsalis groups C is the lowest threshold (thr = 0.15). Red dashed lines with number are corresponded to the threshold values, revealing serial disconnection of the network.
Figure 2 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Figure 2 - Three-dimensional plot of Principal Coordinate Analysis (PCoA) and STRUCTURE analysis. A the planes of the first three principal coordinates explain 43.65%, 20.13%, and 16.91% of total genetic variation, respectively, for seven Bactrocera carambolae populations using eight SSRs B the planes of the first three principal coordinates explain 33.05%, 23.17%, and 15.87%, respectively, for Bactrocera carambolae and Bactrocera dorsalis groups using eight SSRs C the planes of the first three principal coordinates explain 30.50%, 22.14%, and 18.53%, respectively, for the SY5 strain and wild populations using seven SSRs. Pie graphs, consisting of different colored sections, represent co-ancestor distribution of 185, 289, and 321 individuals in A two, B three, and C two hypothetical clusters, respectively.
Figure 9 from: De Meyer M, Delatte H, Ekesi S, Jordaens K, Kalinová B, Manrakhan A, Mwatawala M, Steck G, Van Cann J, Vaníčková L, Břízová R, Virgilio M (2015) An integrative approach to unravel the Ceratitis FAR (Diptera, Tephritidae) cryptic species complex: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 405-427. https://doi.org/10.3897/zookeys.540.10046
Figure 9 - Principal components analysis (PCA) of Euclidean distances between males and females Ceratitis capitata, Ceratitis fasciventris, Ceratitis anonae and Ceratitis rosa (as calculated from peak areas of 59 cuticular hydrocarbons (CHCs)).
Figure 7 from: De Meyer M, Delatte H, Ekesi S, Jordaens K, Kalinová B, Manrakhan A, Mwatawala M, Steck G, Van Cann J, Vaníčková L, Břízová R, Virgilio M (2015) An integrative approach to unravel the Ceratitis FAR (Diptera, Tephritidae) cryptic species complex: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 405-427. https://doi.org/10.3897/zookeys.540.10046
Figure 7 - Structure of admixture proportions of 621 specimens of the FAR complex, assigned to five genotypic clusters (from Virgilio et al. 2013).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.