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9,680 results for “Leaf”

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edi48/100

RIV05 Leaf mass in streams in wooded riparian areas and areas where canopy had been cut at Konza Prairie

Our project was designed to test if woody removal in a riparian zone allowed the system to rebound to a grassland state. We hypothesized that removal would decrease organic matter input into streams.

openCC0Feb 2023View details →
edi48/100

Effect of plant density and light availability on leaf damage in Manilkara bidentata

Variation in herbivory is often associated with plant density and light environment. To determine the effect of these variables on herbivory we studied leaf production and herbivory on saplings, juveniles and adults of Manilkara bidentata (Sapotaceae) in the Luquillo Experimental Forest (LEF), Puerto Rico. The major herbivore of M. bidentata is microlepidoptera leaf miner (Acrocercopssp.; Gracillariidae). To determine the effect of plant density on herbivory, 24 - 20 x 20 m plots were established and the density of saplings, juveniles and adults were determined. Leaf production, herbivory and growth were measured on all saplings in the plots. In addition, plant density was determined in 8-20 x 20 m plots surrounding the 24 focal plots. The effect of light environment was determined by comparing leaf phenology, leaf quality and herbivory in the vertical and horizontal profile. Sapling density in 60 x 60 m plots was associated with increased levels of herbivory. In the vertical profile, leaf production was continuous in the canopy and synchronous for juveniles and saplings and herbivory increased from the canopy (1.3%) towards the understory (35.6%). In the horizontal profile leaf production was related with the light environmen. Saplings in low light environment produced leaves in June, while plants in gaps had a broader peak of leaf production. Differences in leaf phenology did not result in differences in herbivory possibly because there was high variation in herbivory among leaves. Although many saplings lost more than 80% of new leaf area, there was no detectable effect on plant growth. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International

openCC (other)Nov 2023View details →
edi48/100

Interactions between plants and fungi and their roles in decay rates and CO2 release in five tropical leaf species

A microcosm experiment was used to test for the effects of interactions between particular plant and fungal decomposer species on rates of leaf decomposition. Each microcosm contained one species of leaf that was sterilized with gamma irradiation and then inoculated with a single fungus. Five plant species and ten fungal species (two dominants from each of the litter types) were used in all possible combinations. Plant species were selected for pair-wise comparisons based on phylogenetic relationships and litter quality characteristics. Decomposition was measured by both mass loss and CO2 release. Differences in weight loss and CO2 evolution were highly significant for plants, fungal species, and their interactions. Mass loss was positively correlated with CO2 evolution. Contrary to our hypotheses, however, microfungal dominants did not decompose their source leaves faster than microfungal dominants from other leaf species, nor were responses to other types of specificity detected. Matching of fungi to leaf substrates by their source, by phylogenetic relationships, or by chemical, physical and structural characteristics was not associated with consistent increases in decomposition. Although previously documented differences in microfungal species composition and dominance among decomposing leaves of different trees were confirmed in this study, such differences apparently do not directly affect the rates of ecosystem processes. The presence in a few of the microcosms of a generalist basidiomycete that had ligninolytic enzymes, Melanotus eccentricus, significantly accelerated the rate of decomposition. Non-specific basidiomycetes may therefore have a stronger effect on early stages of leaf litter decomposition than host-selective microfungi. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Pue

openCC (other)Nov 2023View details →
edi48/100

Leaf litter collected using baskets over the middle of the channel in Prieta arm B and Gatos

This is a long-term monitoring of leaf litter inputs into Prieta Stream, arm B, and into the Gatos stream. The monitoring is conducted using litter traps similar tho those used in other LTER project. Baskets are suspended over the channel and are emptied every other week. All material is dried and identified. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)May 2023View details →
edi48/100

Fern leaf traits observation at the Luquillo Experimental Forest (LEF)

Ferns are a common element of the understory of forests, yet little is known about the dynamics of leaf production. The long-term role of an individual fern in the ecosystem understory is a function of the number and size of leaves produced over time and the quality of those leaves. Selected functional plant traits (see also LUQ186 -Fern nutrients) were measured in order to supplement non-destructive measurements and detect patterns of primary productivity of ferns in the long-term studies at the Luquillo forest where ferns have been included (eg. Fern growth and demography (LUQ75), Canopy Trimming Experiment (LUQ143 and LUQ146) and the Luquillo Forest Dynamics Plot). Among the important characteristics of fern leaves in the forest understory are the area and biomass of leaves needed to calculate specific leaf area (SLA), leaf dry-matter content (LDMC) and leaf shrinkage. Therefore a large sample of whole leaves and leaf material from several species in the Luquillo Experimental Forest understory was collected, weighed and leaf area measured. The means and regression relationships among these functional traits for species, leaf type and leaf size can then be used to estimate leaf production and turnover rates in temporal studies of fern growth. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)May 2023View details →
edi48/100

Fern leaf nutrients observation at the Luquillo Experimental Forest (LEF)

Ferns are a common element of the understory of forests yet little is known about the dynamics of leaf production. The long-term role of an individual fern in the ecosystem understory is a function of the number and size of leaves produced over time and the quality of those leaves. Selected functional plant traits (see also LUQ186 -Fern nutrients) were measured in order to supplement non-destructive measurements and detect patterns of primary productivity of ferns in the long-term studies at the Luquillo forest where ferns have been included (eg. Fern growth and demography (LUQ75) Canopy Trimming Experiment (LUQ143 and LUQ146) and the Luquillo Forest Dynamics Plot). Among the important characteristics of fern leaves in the forest understory are the area and biomass of leaves needed to calculate specific leaf area (SLA) leaf dry-matter content (LDMC) and leaf shrinkage. Therefore a large sample of whole leaves and leaf material from several species in the Luquillo Experimental Forest understory was collected weighed and leaf area measured. The means and regression relationships among these functional traits for species leaf type and leaf size can then be used to estimate leaf production and turnover rates in temporal studies of fern growth. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)May 2023View details →
edi48/100

Riparian and upland understory vegetation lifeforms and leaf-litterfall ordination analyses in the Luquillo Forest Dynamics Plot

Riparian areas are proportionally a small component of the forested landscape, they are significant contributors to ecosystem process, terrestrial and aquatic linkages, plant community composition, as well to basal energy resources for aquatic fauna. We describe vegetation and leaf-litterfall composition in relation to past land use in riparian and upland locations in tropical wet forest, Luquillo Forest Dynamics Plot (LFDP), Luquillo Experimental Forest, Puerto Rico. Data collected from 2003 to 2005. Stratified sampling was conducted in riparian and upland areas of LFDP with high and low past land use. Understory vegetation life-form composition were sampled in plots. \<para\> Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.\</para\>

openCC (other)Apr 2023View details →
edi48/100

StreamFRE: Downstream leaf litter exports in Prieta and lateral and vertical leaf litter inputs.

StreamFRE: Downstream leaf litter exports in Prieta and lateral and vertical leaf litter inputs. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)Jul 2024View details →
edi48/100

Leaf litter decomposition experiment In QPA and QPB - 2017-2019

We ran a leaf litter decomposition experiment over a seven-week period in each of three different years: 2017, 2018, and 2019. To assess leaf decomposition rates, we incubated leaf packs of freshly abscised Tabonuco (Dacryodes excelsa) leaves in pools in each of our two study stream reaches, and retrieved them at intervals over a seven-week period. We attempted to run experiments before onset of heavy rains which often occur in September-December. We chose to use leaves of Tabonuco for experimental leaf packs because it is a dominant riparian tree species along both of our study reaches. This dataset can be used to asses ecosystem function within tropical headwater streams. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)Apr 2023View details →
edi48/100

Leaf Litter Decomposition Experiment in QPA and QPB – Insects - 2019

Macroinvertebrates collected from Tabonuco leaf packs associated with 50-day in-situ leaf litter decomposition experiment from 2019-07-1 – 2019-08-20 in Quebrada Prieta A and Quebrada Prieta B. This data may be used to examine insect colonization of leaf packs within streams. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)Apr 2023View details →
edi48/100

leaf litter decomposition experiment In QPA and QPB - visual shrimp observations 2019

Visual shrimp observations from pools associated with 2019 in-situ leaf litter decomposition experiment. Shrimp abundance was recorded over two-minute intervals within pools in Quebrada Prieta A and Quebrada Prieta B. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)Apr 2023View details →
edi48/100

fungal interactions during tropical leaf decomposition

Fungal interactions during leaf decomposition can facilitate or inhibit other fungi. This experiment focused on whether preconditioning of leaf litter by microfungi that were confined to one leaf (Unit-Restricted) made leaf litter less likely to be colonized and decomposed by basidiomycetes that bind litter into mats (Non-Unit- Restricted) than non-preconditioned litter. Leaves of Manilkara bidentata in litterbags were preconditioned by incubating them for 0, 1, 2 or 3 months in flat litter/seed rain baskets 10 centimeters above the forest forest floor to avoid colonization by basidiomycete fungi. Preconditioned and non-preconditioned leaves were transferred to 5 replicate basidiomycete fungal mats of Gymnopus johnstonii for 6 weeks. Both attachment by basidiomycete fungi and percent mass loss after 6 weeks decreased significantly with increasing preconditioning time. In non-preconditioned leaves, gamma irradiation did not affect mass loss or percent white-rot despite having significantly increased numbers of basidiomycete fungal connections as compared to non-irradiated leaves. In non-preconditioned leaves, more basidiomycete attachments to non-irradiated than irradiated leaves suggest facilitation by phyllosphere microfungi. While basidiomycete colonization was initially facilitated by phyllosphere fungi, we inferred that degradation of resource quality led to fewer fungal attachments and less mass loss after 1-3 months of preconditioning by microfungi. There is a 1-month time window for basidiomycete fungi to incorporate fallen leaves into their litter mats. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forest

openCC (other)Apr 2023View details →
edi48/100

Rapid root to leaf uptake of inorganic and amino acid nitrogen in three dryland plant species.

Our aim was to quantify inorganic and organic nitrogen (N) uptake and compare short-term nutrient acquisition patterns among three dryland plant species: Bouteloua eriopoda, Achnatherum hymenoides, and Gutierrezia sarothrae collected from a mixed grassland community in the Northern Chihuahuan Desert to better understand how asynchronous resource availability may influence biotic interactions and nutrient retention in these ecosystems. We collected living plants from two locations within the Sevilleta National Wildlife Refuge and transplanted them into pots maintained in the greenhouse with supplemental light and water for two months. We then conducted a greenhouse experiment using these species to compare nutrient uptake of 15N-labeled ammonium (NH4+), nitrate (NO3-), and glutamate (an amino acid) over 12 to 48 hours. Our study examined three main questions: (1) How rapidly do these dryland plants take up available soil N?, (2) Does leaf uptake differ among inorganic and amino acid N forms?, and (3) Do plant species differ in the speed or form of short-term N uptake?. In the greenhouse, we applied one of three isotopic 15N tracers directly to plant roots and quantified N uptake and recovery in leaves after 12, 24, and 48 hours. We found that plants took up inorganic and amino acid N to leaves as rapidly as 12 h following application, and N uptake more than doubled between 24 and 48 h. Inorganic N uptake was 3-4x higher than organic N uptake in all three species, and plants took up ammonium and nitrate at 2-3x faster rates than glutamate. On average, B. eriopoda had higher inorganic N recovery and uptake speeds, while G. sarothrae had the highest organic N uptake over time. A. hymenoides root to leaf uptake was ~50% lower than the other two species after 48 h. Plants showed similar patterns of short-term foliar uptake and recovery indicating a lack of niche partitioning by N form among the three dryland species measured. Our results suggest that soil inorganic N, par

openCC0Aug 2024View details →
zenodo44/100

Plant regeneration in leaf culture of Centaurium erythraea Rafn. Part 3: de novo transcriptome assembly and validation of housekeeping genes for studies of in vitro morphogenesis

<p>Six centaury transcriptomes (embryogenic calli, globular somatic embryos, cotyledonary somatic embryos, adventitious buds, leaves and roots of <em>in vitro</em> grown plants) were sequenced and <em>de novo</em> assembled using <a href="https://github.com/trinityrnaseq/trinityrnaseq/wiki">Trinity</a> .</p> <p><a href="https://zenodo.org/api/files/a0546879-e382-4cf9-8185-f188d1a0c5f0/CE_Assembly.tar.gz">CE_Assembly.tar.gz</a>&nbsp;- Centaury referent transcriptome comprises of 160.839 Trinity transcripts grouped in 105.726 Trinity genes.</p> <p><a href="https://zenodo.org/api/files/a0546879-e382-4cf9-8185-f188d1a0c5f0/CE_Assembly_fpkm.tar.gz">CE_Assembly_fpkm.tar.gz</a>&nbsp;- fpkm normalized read counts of the&nbsp;assembled transcripts in the six sequenced centaury tissues.</p> <p><a href="https://zenodo.org/api/files/a0546879-e382-4cf9-8185-f188d1a0c5f0/nt.db_CE_assembly.tar.gz">nt.db_CE_assembly.tar.gz</a>&nbsp;-&nbsp;annotation of assembled transcripts by mapping them against NCBI nucleotide (NT) database&nbsp;using BLASTn . The obtained results were filtered with E-value E &le; 10<sup>-3</sup>.</p> <p><a href="https://zenodo.org/api/files/a0546879-e382-4cf9-8185-f188d1a0c5f0/swissprot.db_CE_assembly.tar.gz">swissprot.db_CE_assembly.tar.gz</a>&nbsp;-&nbsp;annotation of assembled transcripts by mapping them against NCBI nucleotide (<a href="https://zenodo.org/api/files/a0546879-e382-4cf9-8185-f188d1a0c5f0/swissprot.db_CE_assembly.tar.gz">s</a>wissprot) database&nbsp;using BLASTx . The obtained results were filtered with E-value E &le; 10<sup>-3</sup>.</p> <p><a href="https://zenodo.org/api/files/a0546879-e382-4cf9-8185-f188d1a0c5f0/pfam30.db_CE_assembly.tar.gz">pfam30.db_CE_assembly.tar.gz</a>&nbsp;-&nbsp;annotation of assembled transcripts by mapping them against Pfam30 domain database&nbsp;using hmmer3. The obtained results were filtered with independent E-value E &le; 10<sup>-3</sup>.</p>

opencc-by-4.0Dec 2019View details →
zenodo44/100

Supplementary data for "Armored with skin and bone: A combined histological and µCT study of the exceptional integument of the Antsingy leaf chameleon Brookesia perarmata (Angel, 1933)"

<p>This project contains the supplementary &micro;CT-scans of the whole body and a lateral flank integumentary armor of <em>Brookesia perarmata</em>&nbsp;(Angel, 1933) (Squamata: Iguania: Chamaeleonidae) belonging to the following publication:</p> <p>Schucht P, R&uuml;hr PT, Geier B, Glaw F &amp; M LAmbertz (<strong>2020</strong>): Armored with skin and bone: A combined histological and &micro;CT study of the exceptional integument of the Antsingy leaf chameleon <em>Brookesia perarmata</em> (Angel, 1933). <em>Journal of Morphology</em>. doi:&nbsp;<a href="https://onlinelibrary.wiley.com/doi/full/10.1002/jmor.21135">10.1002/jmor.21135</a>.</p> <p>&nbsp;</p> <p><strong>Whole body scan:</strong></p> <ul> <li>specimen:&nbsp;ZSM 17/2006, Zoologische Staatssammlung M&uuml;nchen</li> <li>machine:&nbsp;phoenix nanotom m (GE Measurement &amp; Control)</li> <li>scan settings: <ul> <li>tube voltage = 110 kV</li> <li>ube current = 70 &mu;A</li> <li>target = tungsten</li> <li>no filter</li> <li>total sample rotation = 360&deg;</li> <li>angular step size = 0.24&deg;</li> <li>exposure time = 750 ms</li> <li>binning = 1</li> <li>averaging = 4</li> <li>voxel size = 37.8 &mu;m</li> </ul> </li> <li>filename:&nbsp;Schucht_B_perarmata_whole.tif</li> </ul> <p>&nbsp;</p> <p><strong>Lateral flank integumentary armor scan:</strong></p> <ul> <li>specimen:&nbsp;ZSM 862/2000, Zoologische Staatssammlung M&uuml;nchen</li> <li>machine:&nbsp;Skyscan 1272 device (Bruker microCT)</li> <li>scan settings: <ul> <li>tube voltage = 70 kV</li> <li>ube current = 142 &mu;A</li> <li>target = tungsten</li> <li>filter =&nbsp;Al 0.5 mm</li> <li>total sample rotation = 180&deg;</li> <li>angular step size = 0.19&deg;</li> <li>exposure time = 1925 ms</li> <li>binning = 2x2</li> <li>averaging = 8</li> <li>random movement = 15</li> <li>voxel size = 4.4 &mu;m</li> </ul> </li> <li>filename:&nbsp;Schucht_B_perarmata_osteoderm.tif</li> </ul>

opencc-by-4.0May 2020View details →
zenodo44/100

Leaf samples of three common plant species collected in seven LandKlif quadrants

<p><span>Leaf samples of Acer pseudoplatanus, Dactylis glomerata and Potentilla reptans were collected in seven LandKlif quadrants along a climate gradient in summer 2020. In each quadrant, leaves were sampled in two habitats (forest and open landscape). In each habitat, three leaves from seven individuals of each species were collected. Specific leaf area (SLA) and leaf dry matter content (LDMC) of each leaf sample were determined in the lab. In addition, nitrogen content was measured at the level of individuals. This dataset contains the mean SLA and LDMC of the leaves sampled from each individual, as well as information on the site where they were collected.</span></p> <p><span>LandKlif is funded by the Bavarian State Ministry of Science and the Arts within the Bavarian Climate Research Network (bayklif). &nbsp;Within the five year funding period of bayklif, five interdisciplinary senior research associations and five junior research groups are be financed with a total sum of 18 million Euro. LandKliF, as one of the five interdisciplinary senior research associations, addresses the effects of climate change on biodiversity and ecosystem services in semi-natural, agricultural and urban landscapes.</span></p>

opencc-by-4.0Mar 2024View details →
zenodo44/100

Global leaf inclination angle (LIA) and nadir leaf projection function (G(0)) products

<p>Leaf inclination angle (LIA), the angle between leaf surface normal and zenith directions, is a vital parameter in radiative transfer, rainfall interception, evapotranspiration, photosynthesis, and hydrological processes. In the radiative transfer regime, LIA is generally represented by the leaf projection function (G(&theta;)), which is defined as the average projection ratio of unit leaf area in the illumination or viewing direction &theta;.</p> <p>This dataset (CAS-GLA) includes the first global mean LIA (MLA) and nadir leaf projection function (G(0)) products at the spatial resolutions of 500 m and 0.05 degrees. The products are recorded in GeoTIFF format under the WGS-84 geographic coordinate system. The global 500 m MLA product was generated by gap-filling LIA measurement data using a random forest regressor after a series of preprocessing, such as spatial expansion, LIA upscaling, and sample screening. Cross-validation shows that the predicted MLA presents a medium consistency (<em>r</em> = 0.75, RMSE = 7.15&deg;) with the validation samples. The 500 m MLA product was further upscaled to 0.05 degrees by weighting the MODIS 500 m leaf area index. The G(0) product was derived from the MLA by assuming a single-parameter ellipsoidal leaf angle distribution. The G(0) product agrees moderately with high-resolution reference data (<em>r </em>= 0.62, RMSE = 0.15). Note the global MLA and G(0) products mainly represent the typical state during the growing season from 2001 to 2022. The MLA and G(0) products would enhance our knowledge about global LIA and should greatly facilitate remote sensing retrieval and land surface modeling studies.</p> <p>In the version 1.1, two quality layers were added to 500 m MLA product to represent the quality of input data and the prediction model.&nbsp;The input data quality was denoted by the proportion of high-quality BRDF inversions for each pixel.&nbsp;The prediction model quality was represented qualitatively for each pixel considering whether the MLA was predicted by extrapolating beyond the range of the training samples. In the 500 m MLA product, the three bands sequentially store MLA, input data quality (scale factor = 0.01), and model quality (1: predictions within the range of samples; 0: predictions out of the range of samples).</p>

opencc-by-4.0Apr 2024View details →
zenodo44/100

Compiled database, code and raw data for the article "A Comprehensive Database of Leaf Temperature, Water, and CO2 Fluxes in Young Oil Palm Plants Across Diverse Climate Scenarios for the Evaluation of Functional-Structural Models"

<p>This dataset results from an experiment on young oil palm plants (<em>Elaeis guineensis</em>) in the Ecotron facility from CNRS in Montpellier. Four plants were put in a microcosm one by one with varying climatic conditions to investigate the effect of climate on leaf temperature, CO2, and H2O fluxes at the plant scale. The conditions were defined based on typical daily conditions from a location where it is grown (Libo, Indonesia),&nbsp;<em>i.e.</em>, a day with no rainfall and near-average air temperature and humidity. This base condition was then modified by adding more CO2 (400, 600 and 800ppm), less radiation (typical cloudy sky), and more or less temperature and vapour pressure deficit (&plusmn; 30%).</p> <p>Find more details from the <code>README.md</code> file in the repository or from the associated <a href="https://github.com/PalmStudio/Biophysics_database_palm" target="_blank" rel="noopener">Github repository</a>.</p>

opencc-by-4.0Jul 2024View details →
zenodo44/100

Leaf reflectance and traits of floating and emergent macrophytes

<p>This dataset includes leaf samples from six floating and emergent macrophyte species common in temperate areas, covering different phenological stages, seasons, and environmental conditions, and measured leaf reflectance (400-2500 nm) and leaf traits (dealing with photophysiology, pigments, and structure). Data were collected along three years (2016-2018) from three temperate shallow lakes surrounded by wetlands and hosting abundant macrophyte communities, located in central and southern Europe: Lake H&iacute;dv&eacute;gi or Kis-Balaton (Hungary), Mantua lakes system (Italy), and Lake Varese (Italy).</p> <p>Leaf photophysiological parameters derived from chlorophyll fluorescence measured with a PAM-2500 chlorophyll fluorometer (Heinz Walz GmbH, Germany).</p> <p>Leaf pigments were derived from spectrophotometric readings of absorbance of leaf extracts in acetone 80%.</p> <p>&nbsp;</p>

opencc-by-4.0Nov 2021View details →
zenodo44/100

Don't put all your eggs in one leaf-roll: a network analysis of candy-striped spider leaf preferences for egg deposition

<p>&quot;Enoplognatha leaf choice.R&quot; - R script for all analyses and figures for the manuscript.</p> <p>&quot;Enop_LeafENNR_EnopChoice.csv&quot; - Interaction matrix showing the leaves selected by each individual candy-striped spider.</p> <p>&quot;Enop_LeafENNR_PlantComm.csv&quot; - Proportional plant community composition in each quadrat within which candy-striped spiders were found.</p> <p>&quot;Enop_LeafTSENNR_EnopChoice.csv&quot; - Interaction matrix showing the tropho-species selected by each individual candy-striped spider.</p> <p>&quot;Enop_LeafENNR_PlantComm.csv&quot; - Proportional plant tropho-species community composition in each quadrat within which candy-striped spiders were found.</p> <p>&quot;Enop_SNRENNR_EnopChoice.csv&quot; - Interaction matrix showing the semi-natural habitats selected by each individual candy-striped spider.</p> <p>&quot;Enop_SNRENNR_SNRs.csv&quot; - Matrix equally representing the semi-natural habitats as the number of quadrats surveyed in each.</p> <p>&quot;Leaf traits.csv&quot; - The leaf trait data used to cluster leaves into tropho-species.</p> <p>&quot;leaf.incidence.csv&quot; - The number of candy-striped spiders that interacted with each plant species for assessment of interaction diversity and completeness.</p> <p>&quot;Site Map.csv&quot; - Latitude and longitude of the ten sampling sites used in this study.</p> <p>&quot;TS plotting order.csv&quot; - A file used to set the plotting order of tropho-species in a bipartite plot.</p>

opencc-by-4.0Nov 2021View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record