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123
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ShareScore release 0.9.0
Dataset results
123 results for “Light microscopy”
Electron microscopy files (SBFSEM & TEM) for "Syncytial nerve net in a ctenophore sheds new light on the early evolution of nervous systems"
<p>4 electron microscopy datasets:</p> <p>1) SBFSEM data of 1-day old ctenophore <em>Mnemiopsis leidyi</em> (animal 1)</p> <p>2) SBFSEM data of 1-day old ctenophore <em>Mnemiopsis leidyi</em> (animal 2)</p> <p>3) SBFSEM data of 1-day old ctenophore <em>Mnemiopsis leidyi</em> (animal 3)</p> <p>4) TEM data of nerve net of 1-day old ctenophore <em>Mnemiopsis leidyi </em></p>
Fig. 3. Isolated type A coprolites viewed using transmitted-light microscopy. Scale bars 100 in The ecological role of immature phantom midges (Diptera: Chaoboridae) in the Eocene Lake Messel, Germany
Fig. 3. Isolated type A coprolites viewed using transmitted-light microscopy. Scale bars 100 µm.
Microvascular network remodeling in the ischemic brain defined by light sheet microscopy
<p>This dataset contains the raw image data set used in the study entitled "Microvascular network remodeling in the ischemic brain defined by light sheet microscopy" by Hagemann et al.. Images were analysed using VesselExpress software (see also <a href="https://pubmed.ncbi.nlm.nih.gov/37056368/">https://pubmed.ncbi.nlm.nih.gov/37056368/</a>) using the provided config file with gamma values ranging from 50 to 400.</p>
Data from: Crustacean photoreceptor damage and recovery: Applying a novel scanning electronic microscopy protocol in artificial light at night studies
Open the record for dataset details and reuse information.
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy
Open the record for dataset details and reuse information.
Code and dataset for: Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy
<p>Dataset and codes for: Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy.</p> <p>Published online via First Release, <strong>11 June 2020</strong></p> <p>B. Qin et al., Science, 10.1126/science.abb8501 (2020).</p> <p> </p>
FIGURE 5. Histological sections documented under light microscopy. A in A comparative study of populations of Ectopleura crocea and Ectopleura ralphi (Hydrozoa, Tubulariidae) from the Southwestern Atlantic Ocean
FIGURE 5. Histological sections documented under light microscopy. A: transversal section at the base of oral tentacles, where they are still adnate to hypostome. B: transversal section of the oral tentacles showing their circular shape. C: oblique section of the aboral tentacles showing the squared section of the cells constituting that. D: transversal section at distal region of hydrocaulus showing its division into two longitudinal chambers. Legends on figures: HO, hypostome; OT, oral tentacle; AT, aboral tentacle; S, septum; C, chamber; P, perisarc.
FIGURE 1. Trisecodes africanum Gumovsky, light microscopy. A and B. Female holotype. A in A new species of Trisecodes from the Afrotropics (Hymenoptera, Eulophidae)
FIGURE 1. Trisecodes africanum Gumovsky, light microscopy. A and B. Female holotype. A. Habitus in lateral view. B. Head and mesosoma, close-up. C–E. Male paratype. C. Habitus in dorsal view. D. Antennae, close-up. E. Fore wing close-up. F. Female paratype, habitus in lateral view. (Black arrow points to apical margin of proximal dark infumation in D and F).
Dataset of light microscopy and image processing for ruthenium red staining - Rhamnogalacturonan-II dimerization deficiency impairs the coordination between growth and adhesion maintenance in plants
<p>This contains additional data relative to version 1, corresponding to a new versio of the manuscript. </p> <p>This dataset contains darkfield light microscopy images from ruthenium red stained <em>Arabidopsis thaliana </em>dark grown hypocotyls of various wildtype and mutant plants, along with the prossessing and quantified data (including segmented masks, corrected masks, raw quantification and processed quantification) reported in the study "Rhamnogalacturonan-II dimerization deficiency impairs the coordination between growth and adhesion maintenance in plants" (<a href="https://www.biorxiv.org/content/10.1101/2024.11.26.625362v1">https://www.biorxiv.org/content/10.1101/2024.11.26.625362v1</a>). Data was acquired following the method described in the publication. Processing of the raw data was perfomed using the RRQuant workflow (<a href="https://doi.org/10.5281/zenodo.14173186">10.5281/zenodo.14173186</a>).</p>
Representative data accompanying the manuscript: Four-dimensional quantitative analysis of cell plate development in Arabidopsis using lattice light sheet microscopy identifies robust transition points between growth phases
<p>Representative data accompanying the manuscript: Sinclair R, Wang M, Jawaid MZ, Longkumer T, Aaron J, Rossetti B, Wait E, McDonald K, Cox D, Heddleston J, Wilkop T, Drakakaki G. (2024). <em>Four-dimensional quantitative analysis of cell plate development in Arabidopsis using lattice light sheet microscopy identifies robust transition points between growth phases.</em> J Exp Bot. 2024 Mar 4: erae091. doi: 10.1093/jxb/erae091.</p> <p>The data show YFP–RABA2a dynamics in dividing cells of Arabidopsis root tips using lattice light sheet microscopy. Treatments with or without Endosidin 7, a cytokinesis-specific callose deposition inhibitor, are shown.</p> <p>Data: </p> <p>22.3 YFP-RABA2A. </p> <p>23.9 YFP-RABA2A ES7 </p>
FIGURE 21. Light microscopy photographs. A–C in The ontogeny of two species of the family Notodromadidae (Cypridoidea, Ostracoda, Crustacea); taxonomic and palaeogeographic significance
FIGURE 21. Light microscopy photographs. A–C, Notodromas trulla, D, Newnhamia fenestrata. A, mandible. B, detail of A showing the pivot point. C, Zenker organ of partially decayed specimen with muscle absent. D, Zenker organ with muscle removed using 5% solution of potassium hydroxide.
Single and few cell analysis for correlative light microscopy, metabolomics, and targeted proteomics (Data)
<p>Combined data for the manuscript `Single and few cell analysis for correlative light microscopy, metabolomics, and targeted proteomics` for all manuscript and supplemental information figures.</p> <p>Every folder contains the raw data and Jupyter notebook (python) for graph creation.</p> <p>Images are not enclosed but are shown in the manuscript.</p> <p> </p>
3D Reconstruction of Neuronal Allometry and Neuromuscular Projections in Asexual Planarians Using Expansion Tiling Light Sheet Microscopy dataset2
<p>wide type planarian 6G10 staining taken with TLSM</p>
FIGURES 17–29. Sellaphora pseudoventralis comb. nov. 17–27. Light microscopy. 29–29. SEM. 28. External valve view. 29 in Sellaphora smirnovii (Bacillariophyta, Sellaphoraceae), a new small-celled species from Lake Glubokoe, European Russia, together with transfer of Navicula pseudoventralis to the genus Sellaphora
FIGURES 17–29. Sellaphora pseudoventralis comb. nov. 17–27. Light microscopy. 29–29. SEM. 28. External valve view. 29. Internal valve view. Scale bars: 10 μm (Figs 17–27), 2 μm (Figs 28–29).
FIGURES 23–26. Navicula yunnanensis Light microscopy, valve views showing reduction. Fig. 24 in Three new species of Navicula (Bacillariophyta) from lakes in Yunnan Plateau (China)
FIGURES 23–26. Navicula yunnanensis Light microscopy, valve views showing reduction. Fig. 24 is of the holotype.
FIGURES 12–16. Navicula gongii. Light microscopy, valve views showing reduction. Fig. 12 in Three new species of Navicula (Bacillariophyta) from lakes in Yunnan Plateau (China)
FIGURES 12–16. Navicula gongii. Light microscopy, valve views showing reduction. Fig. 12 is of the holotype.
Metabolic light absorption, scattering and emission (MetaLASE) microscopy
<p>The uploaded scripts and data generate the figures of the manuscript "Metabolic light absorption, scattering and emission (MetaLASE) microscopy".</p>
FIGURE 4 in Pollen morphology of selected species of Lentibulariaceae Rich. from Western Cuba based on light microscopy and its taxonomic implications
FIGURE 4. Pollen grain ornamentation in Lentibulariaceae and pollen types in Utricularia L. Genlisea A.St.-Hil.: G. filiformis (A); Pinguicula L. ser. Albidae Casper: P. filifolia subsp. alba (B); Utricularia L.: Type I, U. juncea (C); Type II, U. simulans (D); Type III, U. foliosa (E). Bars = 10 μm.
FIGURE 1 in Pollen morphology of selected species of Lentibulariaceae Rich. from Western Cuba based on light microscopy and its taxonomic implications
FIGURE 1. Photomicrographs of pollen grains of Genlisea A.St.-Hil. and Pinguicula L. ser. Albidae Casper. Genlisea filiformis (A, polar view); Pinguicula albida (B, polar view; C, equatorial view); P. cubensis (D, polar view; E, equatorial view); P. filifolia subsp. alba (F, polar view; G, equatorial view); P. filifolia subsp. filifolia (H, polar view; I, equatorial view). Bars = 10 μm.
FIGURE 6 in Pollen morphology of selected species of Lentibulariaceae Rich. from Western Cuba based on light microscopy and its taxonomic implications
FIGURE 6. Pollen types (I, II and III) identified in Utricularia species according to cluster analysis based on morphometric characteristics. U.fol = U. foliosa, U.gib = U. gibba, U.jun = U. juncea, U.pus = U. pusilla, U.res = U. resupinata, U.sim = U. simulans, U.sub = U. subulata.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.