Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
86
datasets available to search
ShareScore release 0.9.0
Dataset results
86 results for “Loop extrusion”
The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination [GRO-Seq]
GEO Series GSE130215. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing; Other.
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation [ChIP-seq]
GEO Series GSE277720. Homo sapiens. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms [Hi-C]
GEO Series GSE235771. Homo sapiens. 8 samples. Type: Other.
CTCF couples long-range loop extrusion and diffusion to mediate a diverse Igk repertoire [3C-HTGTS]
GEO Series GSE287937. Mus musculus. 21 samples. Type: Other.
Chromatin Fiber Folding Represses Transcription and Loop Extrusion in Quiescent Cells (Micro-C XL)
GEO Series GSE167019. Saccharomyces cerevisiae. 8 samples. Type: Other.
Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks [Hi-C]
GEO Series GSE162193. Saccharomyces cerevisiae. 28 samples. Type: Other.
MCM complexes are barriers that restrict cohesin-mediated loop extrusion [snHi-C]
GEO Series GSE196300. Mus musculus. 109 samples. Type: Other.
Nuclear Morphology is Instructed by the Loop Extrusion Program [HiC]
GEO Series GSE232064. Mus musculus. 4 samples. Type: Other.
Chromosome structure in Drosophila is determined by boundary pairing not loop extrusion
GEO Series GSE263229. Drosophila melanogaster. 10 samples. Type: Other.
Uniform dynamics of cohesin-mediated loop extrusion in living human cells
GEO Series GSE273257. Homo sapiens. 14 samples. Type: Other.
CTCF couples long-range loop extrusion and diffusion to mediate a diverse Igk repertoire
GEO Series GSE305325. Mus musculus. 6 samples. Type: Other.
Chromatin Fiber Folding Represses Transcription and Loop Extrusion in Quiescent Cells (ChIP-Seq)
GEO Series GSE167017. Saccharomyces cerevisiae. 80 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks [RNA-seq]
GEO Series GSE191207. Saccharomyces cerevisiae. 4 samples. Type: Expression profiling by high throughput sequencing.
The cellular balance of NIPBL and PDS5 tunes the rate of cohesin loop extrusion and shapes chromosome organization across scales
GEO Series GSE279297. Mus musculus. 33 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms
GEO Series GSE235772. Homo sapiens. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Nuclear Morphology is Instructed by the Loop Extrusion Program [ATAC-Seq]
GEO Series GSE211817. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination [3C-HTGTS]
GEO Series GSE130214. Mus musculus. 19 samples. Type: Genome variation profiling by high throughput sequencing; Other.
The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination [Hi-C]
GEO Series GSE134543. Mus musculus. 2 samples. Type: Other.
Context-Dependent and Gene-Specific Role of Chromatin Architecture Mediated by Histone Modifiers and Loop-extrusion Machinery
GEO Series GSE288605. Mus musculus. 96 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
GEO Series GSE74072. Homo sapiens. 74 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.