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datasets available to search
ShareScore release 0.9.0
Dataset results
78 results for “Nuclear Organization”
Role of Fft3 in nuclear organization
GEO Series GSE58013. Schizosaccharomyces pombe. 8 samples. Type: Methylation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array; Genome binding/occupancy profiling by high throughput sequencing.
The three-dimensional genomic organization changes in terminal erythropoiesis reveal independence of chromatin condensation from nuclear condensation [ATAC-Seq]
GEO Series GSE185468. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptional and genome organization changes in HT1080 cells after overexpression of tissue-specific nuclear transmembrane proteins (NETs)
GEO Series GSE87228. Homo sapiens. 35 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
NURF301 contributes to gypsy chromatin insulator-mediated nuclear organization
GEO Series GSE198361. Drosophila melanogaster. 63 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Nuclear speckles as a key regulator for the 3D genome organization [HiC]
GEO Series GSE131463. Mus musculus. 4 samples. Type: Other.
Polyploid cisplatin-resistant cancer cells have altered nuclear organization and epigenomic status
GEO Series GSE298905. Homo sapiens. 54 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The Effect of Translocation-Induced Nuclear Re-organization on Gene Expression
GEO Series GSE13122. Homo sapiens. 26 samples. Type: Expression profiling by array.
The nuclear envelope protein Net39 is essential for nuclear integrity, chromatin organization, and muscle growth (ChIP-Seq)
GEO Series GSE154848. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Parent-of-origin effects on nuclear chromatin organization and behavior in Drosophila model of Williams-Beuren Syndrome.
GEO Series GSE150980. Drosophila melanogaster. 15 samples. Type: Non-coding RNA profiling by high throughput sequencing.
High-precision mapping of nuclear pore-chromatin interactions reveals new principles of genome organization at the nuclear envelope
GEO Series GSE176106. Mus musculus; Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Lamin B1 and LAP2β resist cytoskeletal force to maintain lamin A/C meshwork organization and preserve nuclear integrity
GEO Series GSE289252. Homo sapiens. 46 samples. Type: Expression profiling by high throughput sequencing.
Lamins organize the three dimensional genome from nuclear periphery in ES cells
GEO Series GSE89520. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Nuclear Genome Organization in Fungi: From Gene folding to Rabl Chromosomes
<p>We discuss the current knowledge on the fungal genome organization, from the association of chromosomes within the nucleus to topological structures at individual genes and the genetic factors required for the hierarchical organization. Chromosome conformation capture followed by high-throughput sequencing (Hi-C) has elucidated how fungal genomes are globally organized in Rabl configuration where centromere or telomere bundles are associated with opposite faces of the nuclear envelope. Here, we explore the presence, in fungal taxa, of the typical proteins associated with genome organization in eukaryotes.</p>
Nuclear Genome Organization in Fungi: From Gene folding to Rabl Chromosomes
<p>We discuss the current knowledge on the fungal genome organization, from the association of chromosomes within the nucleus to topological structures at individual genes and the genetic factors required for the hierarchical organization. Chromosome conformation capture followed by high-throughput sequencing (Hi-C) has elucidated how fungal genomes are globally organized in Rabl configuration where centromere or telomere bundles are associated with opposite faces of the nuclear envelope. Here, we explore the presence, in fungal taxa, of the typical proteins associated with genome organization in eukaryotes.</p>
ZNF599 and DNMT3A coordinately control nuclear envelope organization by repression of SUN4 expression
GEO Series GSE76129. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Chromatin organization drives the exploration strategy of nuclear factors
GEO Series GSE222190. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization around nuclear speckles drives mRNA splicing efficiency (dataset)
<p>Figure 1 files: U1, U2, U4, U6 weighted bedgraphs, contact scores, and seqFISH processed data</p> <p>Figure 2 files: Splicing efficiency calculations from chromatin RNA seq and SPRITE</p> <p>Figure 3 files: MS2-MCP replicate data</p> <p>Figure 4 files: mouse (mESC and myocyte) and human (H1 hESC, H1-endoderm, HFF-c6, GM12878 SPRITE bedgraphs)</p> <p> </p>
Persistent accumulation of unrepaired DNA damage in rat cortical neurons: nuclear organization and ChIP-seq analysis of damaged DNA
GEO Series GSE112930. Rattus norvegicus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.