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153
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ShareScore release 0.9.0
Dataset results
153 results for “Orphans”
Datasets accompanying Deep generative AI models analyzing circulating orphan non-coding RNAs enable accurate detection of early-stage non-small cell lung cancer
<p>These datasets accompany the manuscript "Deep generative AI models analyzing circulating orphan non-coding RNAs enable accurate detection of early-stage non-small cell lung cancer".</p> <p>The datasets include:</p> <ul> <li> <p><code>metadata.tsv.gz</code> Phenotype information of the samples</p> </li> <li> <p><code>mirna_counts.tsv.gz</code> MicroRNA count matrix (for data normalization)</p> </li> <li> <p><code>oncrna_counts.tsv.gz</code> oncRNA count matrix</p> </li> <li> <p><code>orion/</code> Ensemble of Orion models</p> </li> </ul>
Supplementary material 3 from: Sullivan JP, Hopkins CD, Pirro S, Peterson R, Chakona A, Mutizwa TI, Mukweze Mulelenu C, Alqahtani FH, Vreven E, Dillman CB (2022) Mitogenome recovered from a 19 th Century holotype by shotgun sequencing supplies a generic name for an orphaned clade of African weakly electric fishes (Osteoglossomorpha, Mormyridae). ZooKeys 1129: 163-196. https://doi.org/10.3897/zookeys.1129.90287
Cyt b plus nuclear markers phylogenetic analysis
Supplementary material 2 from: Sullivan JP, Hopkins CD, Pirro S, Peterson R, Chakona A, Mutizwa TI, Mukweze Mulelenu C, Alqahtani FH, Vreven E, Dillman CB (2022) Mitogenome recovered from a 19 th Century holotype by shotgun sequencing supplies a generic name for an orphaned clade of African weakly electric fishes (Osteoglossomorpha, Mormyridae). ZooKeys 1129: 163-196. https://doi.org/10.3897/zookeys.1129.90287
Heteromormyrus pauciradiatus holotype NMW 22417 mitogenome reconstruction
Supplementary material 1 from: Sullivan JP, Hopkins CD, Pirro S, Peterson R, Chakona A, Mutizwa TI, Mukweze Mulelenu C, Alqahtani FH, Vreven E, Dillman CB (2022) Mitogenome recovered from a 19 th Century holotype by shotgun sequencing supplies a generic name for an orphaned clade of African weakly electric fishes (Osteoglossomorpha, Mormyridae). ZooKeys 1129: 163-196. https://doi.org/10.3897/zookeys.1129.90287
List of Heteromormyrus specimens examined and/or included in molecular analyses
Supplementary material 4 from: Sullivan JP, Hopkins CD, Pirro S, Peterson R, Chakona A, Mutizwa TI, Mukweze Mulelenu C, Alqahtani FH, Vreven E, Dillman CB (2022) Mitogenome recovered from a 19 th Century holotype by shotgun sequencing supplies a generic name for an orphaned clade of African weakly electric fishes (Osteoglossomorpha, Mormyridae). ZooKeys 1129: 163-196. https://doi.org/10.3897/zookeys.1129.90287
COI phylogenetic analysis
Orphan receptor GPR158 serves as a metabotropic glycine receptor: mGlyR
<p>figures of the paper in graphpad prism and raw data in excel</p>
CER-001 Therapy as a Novel Approach to Treat Genetic Orphan Diseases
ClinicalTrials.gov study NCT02697136. IPD Sharing: NO. Countries: 7. Publications: 0.
HIV/AIDS Orphaned and Vulnerable Children Public Health Evaluation
ClinicalTrials.gov study NCT02386878. IPD Sharing: Not stated. Countries: 0. Publications: 1.
Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate
Open the record for dataset details and reuse information.
Data from: The life cycle of Drosophila orphan genes
Open the record for dataset details and reuse information.
GPR160 de-orphanization reveals critical roles in neuropathic pain in rodents
GEO Series GSE143895. Rattus norvegicus. 5 samples. Type: Expression profiling by high throughput sequencing.
Orphan CpG islands boost the regulatory activity of poised enhancers and dictate the responsiveness of their target genes
GEO Series GSE156465. Mus musculus. 28 samples. Type: Other.
The loss of an orphan nuclear receptor NR2E3 augments Wnt/β-Catenin signaling via epigenetic dysregulation that promotes the Sp1-β catenin-p300 interactions in hepatocellular carcinoma.
GEO Series GSE243020. Mus musculus; Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
A Gain-of-Function Genomic Screen Identifies the Orphan Nuclear Receptor TLX as an Enhancer of STAT1-mediated Transcription and Immunity to Toxoplasma gondii: TLX overexpression
GEO Series GSE55749. Homo sapiens. 8 samples. Type: Expression profiling by array.
Orphan Nuclear Receptors ERRα/γ are competence factors for somatic cell reprogramming
GEO Series GSE31704. Homo sapiens. 6 samples. Type: Expression profiling by array.
The Loss of an orphan Nuclear Receptor augments Wnt/β-Catenin signaling via epigenetic dysregulation that promotes Sp1 and Myc interactions in Hepatocellular Carcinoma Development [FAIRE-seq]
GEO Series GSE243019. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Regulation of sialidase production in clostridium perfringens by the orphan sensor histidine kinase ReeS
GEO Series GSE36786. Clostridium perfringens str. 13. 4 samples. Type: Expression profiling by array.
Mapping the FOXA1 Interactome in ER+ Breast Cancer Cells using Proximity Labeling Reveals Novel Interactions with the Orphan Nuclear Receptor NR2C2 [RNA-Seq]
GEO Series GSE299760. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Early programming of CD8+ T cell response by the orphan nuclear receptor NR4A3 [RNA-Seq]
GEO Series GSE143512. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of ERR alpha orphan nuclear receptor
GEO Series GSE49110. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.