Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
138
datasets available to search
ShareScore release 0.9.0
Dataset results
138 results for “Pest control”
Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs
<p>The New World Screwworm fly, <i>Cochliomyia hominivorax</i>, is a major pest of livestock in South America and Caribbean. However, few genomic resources have been available for this species. A genome of 534 Mb was assembled from long read PacBio DNA sequencing of DNA from a highly inbred strain. Analysis of molecular evolution identified 40 genes that are likely under positive selection. Developmental RNA-seq analysis identified specific genes associated with each stage. We identify and analyze the expression of genes that are likely important for host-seeking behavior (chemosensory), development of larvae in open wounds in warm-blooded animals (heat shock protein, immune response) and for building transgenic strains for genetic control programs including gene drive (sex determination, germline). This study will underpin future experiments aimed at understanding the parasitic lifestyle of the screwworm fly and greatly facilitate future development of strains for efficient systems for genetic control of screwworm.</p>
Invertebrate community structure predicts natural pest control resilience to insecticide exposure
<p>Biological pest control has become one of the central principles of ecological intensification in agriculture. However, invertebrate natural enemies within agricultural ecosystems are exposed to a myriad of different pesticides at both lethal and sub-lethal doses, that may limit their capacity to carry out pest control. An important question is how underlying diversity in invertebrate predator species, linked to their unique susceptibility to insecticides, can act to increase the resilience of natural pest control.</p> <p>We explore this issue by assessing the effects of sub-lethal insecticide exposure on the predation rates of 12 generalist predators feeding on the aphid <i>Sitobion avenae</i> (Aphididae). Predation rates within a 24 hr period were assessed (predation assessment) for each species after receiving one of the following treatments: 1) no prior deltamethrin exposure before the predation assessment (control); 2) deltamethrin exposure immediately before the predation assessment (resistance); and 3) deltamethrin exposure five days before the predation assessment (recovery). Extrapolating from these species-specific measures of resistance and recovery, we predicted the resilience of community level predation to insecticide exposure for predator communities associated with 256 arable fields in the UK.</p> <p>There was large variation in sub-lethal effects of the insecticide between even closely related species. This ranged from species showing no change in predation rates following sub-lethal insecticide exposure (high resistance), species showing only immediate depressed feeding rates after 24 hrs (high recovery), or those with depressed feeding rates after five days (low resistance and recovery).</p> <p>The community level analysis showed that resistance and recovery of natural pest control was predicted by both community phylogenetic diversity (positively) and weighted mean body mass (negatively). However, the removal of numerically dominant species from the analysis modified these effects.</p> <p><strong>Synthesis and applications. </strong>Our results highlight the role of community diversity in maintaining the resilience of natural pest control following insecticide use. Importantly, less diverse assemblages dominated by predator species that show low resilience to insecticide exposure, may show a greater depression in pest control than diverse assemblages under insecticide based farmland management. </p>
The shape of the predator biomass distribution affects biological pest control services in agricultural landscapes
<p>1. Understanding how community composition of service-providing organisms affects ecosystem functioning is a key challenge in ecology. Although it has been proposed that taxonomic diversity and functional traits mediate this relationship, how several facets of community structure affect the delivery of key ecosystem services remains to be explored.</p> <p>2. In this study, we investigated how abundance, taxonomic richness as well as the shape of biomass distribution in predator communities affect biological pest control services in vineyard landscapes. Our analyses were based on a dataset combining samples of arthropod predators, measures of predation rates of grape pests and characterization of environmental covariables for 42 fields located in South-Western France.</p> <p>3. We found that beside the abundance or the taxonomic richness of predators, the shape of biomass distribution (mean, variance, skewness and kurtosis of the distribution) influences the level of biological control. Predator communities largely dominated by low biomass species provided the bulk of biological control services. Lower levels of predation resulted from increased proportions of large biomass species and more evenly distributed biomass values in the communities.</p> <p>4. Our results indicate that the top-down control provided by low biomass species decreases as the relative proportion of large biomass species increases in the predator community. This suggests that biological control may be affected by negative interactions (e.g., intraguild predation, behavioural interactions) between predators arising from the recruitment of large individuals in the community.</p> <p>5. Our study revealed that the shape of biomass distribution is a major aspect of functional diversity in predator communities providing insights into the mechanisms that link biodiversity and ecosystem services. While our study focuses on biomass, considering other traits involved in trophic interactions may increase our ability to predict the level of biological control in ecosystems.</p>
Dataset used for the submitted manuscript "The hump-shaped effect of plant functional diversity on the biological control of a multi-species pest community"
<p>Dataset</p>
Enhancing ecosystem services in apple orchards: Nest boxes increase pest control by insectivorous birds
<p>Ecological intensification in croplands aims to enhance biodiversity-based ecosystem services, helping to increase yield while reducing agricultural environmental impacts. Identifying ecological intensification tools of wide applicability and easily implemented by farmers is, therefore, an imperative. Here, we verify the efficiency of provisioning artificial nest boxes for insectivorous birds to reinforce pest biological control in apple orchards.</p> <p>The study was conducted in 24 cider-apple orchards in Asturias (NW Spain) over three years. We compared the effect of insectivorous birds between orchards with and without nest boxes occupied by different bird species, through insectivory estimates based on attack on a sentinel pest and measurements of arthropod abundance in apple trees. We also identified preys that birds of different species captured to feed nestlings.</p> <p>Bird occupancy of nest boxes was widespread, ranging 25.0-33.3% each year. Great tit was the dominant species, followed by blue tit and, occasionally, common redstart.</p> <p>Predation pressure on apple pests increased in orchards with nest boxes, as judged by the increased proportion of sentinel models attacked by birds (34.9% increase in 2018 and 41.1% in 2019), decreased biomass of tree-dwelling arthropods (-51.7%) and reduced probability of apple pest occurrence (from 57 to 40%), compared to orchards without nest boxes.</p> <p>Nesting species showed different predatory roles in apple orchards. Fewer attacks on sentinel pests but lower arthropod biomass was associated with blue tit rather than great tit. Besides, blue tit fed nestlings at a faster rate and included in their diet a higher proportion of apple pests than great tit, which preyed mostly on other herbivorous insects.</p> <p>Synthesis and applications. We demonstrated the usefulness of nest boxes for insectivorous birds in enhancing biological control of apple pests at a regional scale, identifying tit species as complementary predators of apple pests and herbivores. From the farmers' perspective, providing nest boxes in orchards may represent an efficient, easy to implement, cheap and attractive measure of ecological intensification, compatible with other actions fostering biodiversity in croplands.</p>
Optimized composite microspheres containing spinosad and an attractant for control of a fruit fly pest
<p>These original data and analysis graph are for the manuscript titled "<strong>Optimized composite microspheres containing spinosad and an attractant for control of a fruit fly pest</strong>". If readers are interested in this paper, you can email to me and discuss the result. Also, we wecolme the coopertion on the fruit fly control program and techniques. </p>
Data from: Nectar accessibility determines fitness, flower choice and abundance of hoverflies that provide natural pest control
1. In modern agricultural landscapes many organisms providing ecosystem services such as pollination and natural pest control are likely constrained by shortage of nectar and/or pollen required for adult nutrition. More and more flower-rich field margin strips and other habitats are created to eliminate these constraints. For most target organisms, however, it is not well known which (types of) flowers are effective in providing suitable pollen and nectar. 2. We studied the suitability of a wide range of flowers as a food source for zoophagous hoverflies (hoverflies with predatory larvae) at five different levels: nectar accessibility (based on flower morphology), realized adult fitness, flower choice (both based on cage experiments), flower visitation, and hoverfly abundance in mixed vegetation (both based on field observations). 3. Realized survival of Episyrphus balteatus is related to effective flower depth by a sigmoid function. The critical flower depth is 1.6 mm, which is less than the proboscis size of the hoverfly. For Asteraceae the critical floret depth is even less than 1.0 mm, which – in contrast to common knowledge – rules out most species within this family. 4. Both flower choice in the laboratory and flower visitation rates in the field are well correlated with nectar accessibility and realized adult survival. 5. In mixed floral vegetation the number of zoophagous hoverflies is highly correlated with the abundance of only those flowers that have accessible nectar for these hoverflies. 6. Synthesis and applications. This comparative study demonstrates that nectar (and not pollen) accessibility is the main driver determining flower resource suitability, flower choice and abundance of zoophagous hoverflies in arable field margins. The study identifies the limited range of plant species that can effectively support these beneficial insects. Preserving the right flowers in and around agricultural fields could enhance local populations and the pest control and pollination services they provide.
Data from: Natural vegetation benefits synergistic control of the three main insect and pathogen pests of fruit crop in southern Africa
1. Most studies of the potential for natural habitat to improve agricultural productivity have been conducted in transformed, temperate regions, but little is known of the importance of agroecosystem services in biodiverse developing countries. 2. Natural vegetation may promote the density and/or diversity of natural enemies of crop pests, but the strength of the effect varies, and few studies directly measure concurrent impacts on pest density. Considering multiple pest species within the same agroecosystem may help explain why some pests are more affected than others by landscape complexity. Here, we investigated multiple pest species (three species of Tephritidae fruit fly, leaf galling flies and pathogenic fungi Fusarium spp.) and their enemies in cultivated mango Mangifera indica, in north-eastern South Africa. 3. The density of generalist Tephritidae fruit flies increased with distance from natural vegetation during harvesting months, and predation rate of pupae sharply decreased from ~50% at the edge with natural vegetation to 0% at 250 m into the crop. Parasitism rates of the cryptic, gall-forming fly increased with proximity to natural vegetation, but pest density was unrelated to distance from natural vegetation. Incidence of the fungal pathogen disease increased with distance from natural vegetation, possibly due to decreased predation of commensal mites. 4. Although the relationship with distance to natural vegetation was significant for all species considered, the strength of this relationship varied across pest species and type of natural enemy studied, suggesting the benefits of natural vegetation depend on each natural enemy species' ability to disperse into the agricultural environment. 5. Synthesis and applications. Our results suggest that natural vegetation is a net source of natural enemies in a region of South Africa that still contains much of its natural biodiversity. However, the decline in natural enemies, and increase in pests, with distance from natural habitat indicates that this biocontrol is limited by natural enemy dispersal. In landscapes like these that are still dominated by natural habitat, conservation biocontrol can still be improved by management aimed at providing corridors of key plants and habitat elements into the crops, to facilitate natural enemy dispersal.
Data from: Do differences in food web structure between organic and conventional farms affect the ecosystem service of pest control?
While many studies have demonstrated that organic farms support greater levels of biodiversity, it is not known whether this translates into better provision of ecosystem services. Here we use a food-web approach to analyse the community structure and function at the whole-farm scale. Quantitative food webs from 10 replicate pairs of organic and conventional farms showed that organic farms have significantly more species at three trophic levels (plant, herbivore and parasitoid) and significantly different network structure. Herbivores on organic farms were attacked by more parasitoid species on organic farms than on conventional farms. However, differences in network structure did not translate into differences in robustness to simulated species loss and we found no difference in percentage parasitism (natural pest control) across a variety of host species. Furthermore, a manipulative field experiment demonstrated that the higher species richness of parasitoids on the organic farms did not increase mortality of a novel herbivore used to bioassay ecosystem service. The explanation for these differences is likely to include inherent differences in management strategies and landscape structure between the two farming systems.
Data from: Tailored flower strips promote natural enemy biodiversity and pest control in potato crops
1. Sown flower strips are increasingly implemented within agri-environment schemes (AES) to increase functional biodiversity and ecosystem services such as pollination or natural pest control, but their effectiveness in achieving these goals remains poorly studied. 2. We tested the performance of experimentally sown annual flower strips specifically designed to promote natural enemies of aphids and their pest control services (tailored flower strips) in adjacent potato crops (n=8) compared to control fields (n=10). Flower strips consisted of 11 plant species providing abundant floral and extra-floral resources. 3. The abundance of key natural enemies of aphids (hoverflies, lacewings and ladybirds) and hoverfly species richness was greatly enhanced in tailored flower strips compared to potato control strips. This resulted in an average increase in the number of eggs deposited by hoverflies and lacewings by 127 % and 48 %, respectively, and a reduction in the number of aphids by 75 % in adjacent potato crops. 4. Synthesis and applications. We conclude that tailored flower strips can be an effective agri-environmental measure to enhance natural enemies and aphid control in nearby crops. Indeed, tailored flower strips may help to reduce insecticide input in potato production as they significantly decrease the probability that action thresholds are reached. Promoting natural enemy abundance and diversity, as observed for hoverflies, may increase the stability of pest control and provide additional benefits to agro-ecosystems in terms of natural enemy conservation. We thus recommend establishing tailored flower strips as a promising management option to reconcile the objectives of ecological intensification and biodiversity conservation.
Data from: Forest restoration as a double-edged sword: the conflict between biodiversity conservation and pest control
1. Forestry has markedly changed a large proportion of the world's boreal forests, often with negative effects on biodiversity. As a result, forest restoration is increasingly implemented to counteract the negative effects. However, restoration measures aimed at mimicking natural disturbance regimes could simultaneously increase the risk of unwanted negative effects, such as damage by forest pest species. This study compares the effect of two restoration methods (prescribed burning and gap-cutting), on both biodiversity conservation and pest control, to provide a basis for solutions to this potential conflict. 2. Bark beetles are ideal for studying this conflict, as this group is both species-rich and contains notorious pest species. We conducted a unique, large-scale field experiment in which we compared the effect of two different restoration methods on the abundance, species richness and assemblage composition of bark beetles. In addition, we estimated uncontrolled tree mortality by the number of trees that died post-restoration. 3. Beetles were divided in two groups, primary and secondary, the former with an ability to kill growing trees. Bark beetle diversity did not differ between treatment groups prior to restoration. However, after restoration, assemblage composition and primary bark beetle abundance differed between the treatments. Furthermore, species richness was higher in burned and gap-cut stands compared to reference stands. 4. The number of trees that died post-restoration was highest on burned sites, whereas no difference was found between gap-cut and reference stands. The number of dead trees was correlated with the number of primary beetles. 5. Synthesis and applications. We demonstrate the potential for a conflict between forest restoration for biodiversity conservation and the potential risk for tree mortality caused by forest pests. This is likely to become a problem in many boreal forests; however, our results suggest that this conflict can be moderated by the choice of restoration method. The restoration method gap-cutting had a similar positive impact on bark beetle species richness as compared to the burning method, but did not as burning increase tree mortality. Thus, in areas where there is an apparent risk for pest outbreaks, our data suggest that gap-cutting should be the chosen method to avoid an unwanted increase in tree mortality at the stand level. 13-Mar-2017
Data from: Contribution of predation to the biological control of a key herbivorous pest in citrus agroecosystems
Biological control has traditionally simplified the view of trophic relationships between herbivorous pests and their natural enemies in agriculture. The success or failure of this pest management strategy is still mainly attributed to the ability of a few key natural enemies to suppress the pest density. For example, successful regulation of the California red scale (Aonidiella aurantii) a key citrus pest, is generally credited to specific parasitoids of the Aphytis genus. Currently, research is revealing how herbivore regulation in agroecosystems can be alternatively achieved with a greater number of trophic associations within the system. The goals of the present study were: i) to unravel species‐specific trophic links between A. aurantii, and its natural enemies in citrus agroecosystems, and ii) to assess their contribution to control of A. aurantii. Predation and parasitism of this herbivorous pest were assessed through exclusion experiments. Species‐specific trophic links between this herbivorous pest and its natural enemies were studied using gut‐content analysis of field collected predators employing prey specific DNA molecular markers. Relative predation rates of the species involved in A. aurantii regulation were estimated. Predation was found to be the main biotic component of A. aurantii mortality, causing reductions of more than 75% in recently settled cohorts. Aonidiella aurantii DNA was detected in the digestive system of 11 species of predators. Generalist and stenophagous predators, mainly associated with other citrus pests such as aphids, proved to be the most important biological control agents of this pest. Complex trophic relationships, such as apparent competition between two key citrus pests, were revealed. The present study highlights the role of predation as biotic mortality factor of key pests in perennial agroecosystems; wherein, it is a rich complex of indigenous or naturalized generalist predators that are primarily responsible for this mortality. The results herein presented may therefore offer another perspective on the biological control of one of the key worldwide citrus pests; at least in those regions where specific parasitoids are not able to successfully regulate the scale populations.
Controlled-release of Bacillus thurigiensis formulations encapsulated in light-resistant colloidosomal microcapsules for the management of lepidopteran pests of Brassica crops.
<p>The fours xls files contain the raw data for Figures 3 and 4.</p> <p>The zip file contains AFM pictures, DLS measurements, DSC data, visible microscopy pictures and UV-VIS absorption data for iron oxide nanoparticles.</p>
Changes in arthropod communities mediate the effects of landscape composition and farm management on pest control ecosystem services in organically managed strawberry crops
<p>Landscape composition and local diversification practices such as polyculture, cover cropping, and hedgerows may promote natural pest control by benefiting natural enemy communities on farms. Our study employs piecewise structural equation modeling (PSEM) to test causal hypotheses regarding the effects of landscape composition and local diversification practices on arthropod communities and pest control ecosystem services.</p> <p>We sampled 27 organic strawberry fields in California's Central Coast region in 2015 and 2016 (17 repeated between years) for a total of 37 distinct sites across years. The sites were selected along orthogonal gradients of landscape composition and local diversification practices. We also investigated the effects of two common pest management practices. At each site, we sampled arthropod communities using a hand-held vacuum and performed sentinel prey experiments using the pest species <em>Lygus hesperus</em> to estimate pest control levels.</p> <p>At the landscape scale, proportion woods increased natural enemy abundance; at the local scale, diversification practices increased natural enemy diversity.</p> <p>Insecticides and tractor vacuuming, aimed at controlling pests, were indirectly detrimental to pest control services. Both practices decreased natural enemy abundance, and while insecticides also decreased pest abundance, vacuuming did not.</p> <p>Natural enemy abundance and diversity increased pest control levels, while pest abundance had the opposite effect. The PSEM results confirmed our hypotheses that landscape and local effects on pest control are mediated through changes in arthropod communities.</p> <p><em><a>Synthesis </a>and applications</em>: At the landscape scale, higher proportions of woody habitat are associated with greater natural enemy abundance, which increases pest control levels. When promoting pest control ecosystem services is a policy goal, regional planners should prioritize the conservation and restoration of woodlands in agricultural landscapes. At the local scale, decisions of individual growers can impact pest control services. For many growers, adopting practices that promote on-farm plant diversity may be a feasible solution for increasing pest control levels while avoiding the environmental and economic costs imposed by insecticide application and tractor <a>vacuuming. </a></p> <div> <div> <div class="msocomtxt"> <p class="MsoCommentText"> </p> </div> </div> </div>
Supplementary material 2 from: Fiaboe K, Fernández-Triana J, Nyamu F, Agbodzavu K (2017) Cotesia icipe sp. n., a new Microgastrinae wasp (Hymenoptera, Braconidae) of importance in the biological control of Lepidopteran pests in Africa. Journal of Hymenoptera Research 61: 49-64. https://doi.org/10.3897/jhr.61.21015
Tree Result – Search: Sample IDs; Seq Length(500 bp); Include public records (170 records returned) (170 records selected) :
Data from: Pest control of aphids depends on landscape complexity and natural enemy interactions
Aphids are a major concern in agricultural crops worldwide, and control by natural enemies is an essential component of the ecological intensification of agriculture. Although the complexity of agricultural landscapes is known to influence natural enemies of pests, few studies have measured the degree of pest control by different enemy guilds across gradients in landscape complexity. Here, we use multiple natural-enemy exclosures replicated in 18 fields across a gradient in landscape complexity to investigate (1) the strength of natural pest control across landscapes, measured as the difference between pest pressure in the presence and in the absence of natural enemies; (2) the differential contributions of natural enemy guilds to pest control, and the nature of their interactions across landscapes. We show that natural pest control of aphids increased up to six-fold from simple to complex landscapes. In the absence of pest control, aphid population growth was higher in complex than simple landscapes, but was reduced by natural enemies to similar growth rates across all landscapes. The effects of enemy guilds were landscape-dependent. Particularly in complex landscapes, total pest control was supplied by the combined contribution of flying insects and ground-dwellers. Birds had little overall impact on aphid control. Despite evidence for intraguild predation of flying insects by ground-dwellers and birds, the overall effect of enemy guilds on aphid control was complementary. Understanding pest control services at large spatial scales is critical to increase the success of ecological intensification schemes. Our results suggest that, where aphids are the main pest of concern, interactions between natural enemies are largely complementary and lead to a strongly positive effect of landscape complexity on pest control. Increasing the availability of seminatural habitats in agricultural landscapes may thus benefit not only natural enemies, but also the effectiveness of aphid natural pest control.
Species complex diversification by host plant use in an herbivorous insect: The source of Puerto Rican cactus mealybug pest and implications for biological control
Cryptic taxa have often been observed in the form of host‐associated species that diverged as the result of adaptation to alternate host plants. Untangling cryptic diversity in species complexes that encompass invasive species is a mandatory task for pest management. Moreover, investigating the evolutionary history of a species complex may help to understand the drivers of their diversification. The mealybug Hypogeococcus pungens was believed to be a polyphagous species from South America and has been reported as a pest devastating native cacti in Puerto Rico, also threatening cactus diversity in the Caribbean and North America. There is neither certainty about the identity of the pest, nor the source population from South America. Recent studies pointed to substantial genetic differentiation among local populations, suggesting that H. pungens is a species complex. In this study, we used a combination of genome-wide SNPs and mtDNA variation to investigate species diversity within H. pungens sensu lato to establish host plant ranges of each one of the putative members of the complex, to evaluate whether the pattern of host plant association drove diversification in the species complex, and to determine the source population of the Puerto Rican cactus pest. Our results suggested that H. pungens comprises at least five different species, each one strongly associated with specific host plants. We also established that the Puerto Rican cactus pest derives from southeastern Brazilian mealybugs. This is an important achievement because it will help to design reliable strategies for biological control using natural enemies of the pest from its native range.
Supplementary material 1 from: Seehausen ML, Branco M, Afonso C, Kenis M (2023) Testing a modified version of the EPPO decision-support scheme for release of classical biological control agents of plant pests using Ganaspis cf. brasiliensis and Cleruchoides noackae as case studies. NeoBiota 87: 121-141. https://doi.org/10.3897/neobiota.87.103187
Decision-support scheme for release of classical biological control agents of plant pests – Environmental impact assessment (EIA)
Data from: Agricultural practices for food safety threaten pest control services for fresh produce
Open the record for dataset details and reuse information.
Data from: Landscape structure regulates pest control provided by ants in sun coffee farms
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.